[949] | 1 | #include "machdefs.h"
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| 2 | #include <stdlib.h>
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[839] | 3 | #include "fitsfile.h"
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| 4 | #include "pexceptions.h"
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| 5 | #include "strutil.h"
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[903] | 6 | #include "anydataobj.h"
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| 7 | #include "fitsspherehealpix.h"
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[1136] | 8 |
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| 9 |
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[1218] | 10 | void BnTblLine::setFormat(int dc, int fc, int ic, int cc, vector<string> names)
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| 11 | {
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| 12 | int nbcols = dc + fc + ic + cc;
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| 13 | int maxName = names.size();
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| 14 | if (nbcols != maxName)
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| 15 | {
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| 16 | cout << " WARNING: BnTblLine:: length of vector of column names not equal to total number of columns" << endl;
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| 17 | maxName = nbcols < maxName ? nbcols : maxName;
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| 18 | }
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| 19 | ColName_ = vector<string>(nbcols);
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| 20 | for (int k=0; k < maxName; k++) ColName_[k] = names[k];
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| 21 | if (dc >0) ddata_ = vector<double>(dc);
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| 22 | if (fc >0) fdata_ = vector<float>(fc);
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| 23 | if (ic >0) idata_ = vector<int>(fc);
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| 24 | if (cc >0) cdata_ = vector<string>(fc);
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| 25 | }
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| 26 |
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| 27 | bool BnTblLine::sameFormat(const BnTblLine& btl) const
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| 28 | {
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| 29 | if (btl.ddata_.size() == ddata_.size() && btl.fdata_.size() == fdata_.size() && btl.idata_.size() == idata_.size() && btl.cdata_.size() == cdata_.size()) return true;
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| 30 | else return false;
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| 31 | }
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| 32 |
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| 33 | void BnTblLine::Print()
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| 34 | {
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| 35 | int k;
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| 36 | cout << " ********* ligne ************* " << endl;
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| 37 | cout << " *** noms de variables " << endl;
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| 38 | for (k=0; k < ColName_.size(); k++) cout << ColName_[k] << " ";
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| 39 | cout << endl;
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| 40 | cout << " *** variables doubles " << endl;
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| 41 | for (k=0; k < ddata_.size(); k++) cout << ddata_[k] << " ";
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| 42 | cout << endl;
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| 43 | cout << " *** variables float " << endl;
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| 44 | for (k=0; k < fdata_.size(); k++) cout << fdata_[k] << " ";
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| 45 | cout << endl;
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| 46 | cout << " *** variables int " << endl;
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| 47 | for (k=0; k < idata_.size(); k++) cout << idata_[k] << " ";
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| 48 | cout << endl;
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| 49 | cout << " *** variables string " << endl;
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| 50 | for (k=0; k < cdata_.size(); k++) cout << cdata_[k] << " ";
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| 51 | cout << endl;
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| 52 | cout << " ***************************** " << endl;
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| 53 | }
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| 54 |
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| 55 |
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| 56 |
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| 57 | /*!
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| 58 | \class SOPHYA::FitsIOHandler
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| 59 | The class structure is analogous to Sophya-PPersist system :
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| 60 | Each SOPHYA object XXX is associated with a object of class FITS_XXX
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| 61 | (inheriting from FitsFileHandler), to which input/output operations with FITS
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| 62 | files are delegated (through a class Hierarchy : FitsFile (virtual),
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| 63 | FitsInFile, FitsOutFile) . A typical example of use is the following :
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| 64 |
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| 65 | \verbatim
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| 66 | int m=... ;
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| 67 | SphereHEALPix<r_8> sphere1(m); // definition of the SOPHYA object
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| 68 | .... fill the sphere ....
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| 69 |
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| 70 | FITS_SphereHEALPix<r_8> fits_sph1(sphere1);
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| 71 | // delegated object
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| 72 | fits_sph.Write("myfile.fits"); // writing on FITS file
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| 73 |
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| 74 | FITS_SphereHEALPix<r_8> fits_sph2("myfile.fits");
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| 75 | // load a delegated object
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| 76 | // from FITS file
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| 77 | SphereHEALPix<r_8> sphere2=(SphereHEALPix<r_8>)fits_sph2;
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| 78 | // casting the delegated object
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| 79 | // into a SOPHYA object
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| 80 | \endverbatim
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| 81 |
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| 82 |
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| 83 | */
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| 84 |
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| 85 | /*! \fn void SOPHYA::FitsIOHandler::Read(char flnm[],int hdunum)
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| 86 |
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| 87 | this method is called from inherited objects :
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| 88 |
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| 89 | opens a file 'flnm'
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| 90 |
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| 91 | gets parameters in extension-header (hdunum)
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| 92 |
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| 93 | calls the method 'ReadFromFits' from the inherited object
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| 94 | */
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[1136] | 95 | void FitsIOHandler::Read(char flnm[],int hdunum)
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[839] | 96 | {
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[1136] | 97 | FitsInFile ifts(flnm);
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| 98 | Read(ifts, hdunum);
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[839] | 99 | }
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[1218] | 100 |
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| 101 | /*! \fn void SOPHYA::FitsIOHandler::Read(FitsInFile& is, int hdunum)
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| 102 | Read the data on extension hdunum (or primary header, if hdunum=1) from FitsInFIle. If hdunum is not addressed, , one reads the next extension, with respect to the current position.
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| 103 | */
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[1136] | 104 | void FitsIOHandler::Read(FitsInFile& is, int hdunum)
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| 105 | {
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[1175] | 106 | if (hdunum == 0) is.moveToFollowingHeader();
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| 107 | else is.ReadFInit(hdunum);
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[1136] | 108 | ReadFromFits(is);
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| 109 | }
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| 110 |
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| 111 |
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[1218] | 112 | /*! \fn void SOPHYA::FitsIOHandler::Write(char flnm[])
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| 113 | this method is called from inherited objects.
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| 114 |
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| 115 | for writing a new object in a new fits-extension :
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| 116 |
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| 117 | \warning By convention, primary header does not contain fits-image data : i.e.
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| 118 | all data are fits-extensions. The first relevant header will have hdunum=2.
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| 119 | For switching off this convention use the method :
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| 120 |
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| 121 | firstImageOnPrimaryHeader() (see below)
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| 122 |
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| 123 | In that case do not forget to precise hdunum=1 when reading data on primary header.
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| 124 |
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| 125 | calls the method 'WriteToFits' from the inherited object
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| 126 |
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| 127 | */
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[1193] | 128 | void FitsIOHandler::Write(char flnm[])
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[1136] | 129 |
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| 130 | {
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[1193] | 131 | FitsOutFile of(flnm, unknown);
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[1136] | 132 | Write(of);
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| 133 | }
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| 134 |
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| 135 | void FitsIOHandler::Write(FitsOutFile& os)
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| 136 | {
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| 137 | WriteToFits(os);
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| 138 | }
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| 139 |
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| 140 |
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[1218] | 141 | /*!
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| 142 | \class SOPHYA::FitsIOHandler
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| 143 | Class (virtual) for managing FITS format files
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| 144 | */
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[1136] | 145 |
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[1218] | 146 |
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[839] | 147 |
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| 148 | FitsFile::~FitsFile()
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| 149 | {
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| 150 | int status = 0;
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[1175] | 151 | if( fptr_ != NULL)
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[903] | 152 | {
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| 153 | fits_close_file(fptr_,&status);
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[1175] | 154 | // je ne fais pas delete fptr_, c'est la lib. fitsio qui a fait
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| 155 | // new...
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[903] | 156 | }
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[1175] | 157 | if( status ) printerror( status );
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[839] | 158 | }
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[903] | 159 |
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[1136] | 160 |
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| 161 | void FitsFile::printerror(int &status)
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| 162 | //*****************************************************/
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| 163 | //* Print out cfitsio error messages and exit program */
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| 164 | //*****************************************************/
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[1045] | 165 | {
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[1136] | 166 | if( status )
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| 167 | {
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| 168 | fits_report_error(stderr,status);
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| 169 | throw IOExc("FitsFile:: error FITSIO status");
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| 170 | }
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| 171 | return;
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| 172 | }
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[903] | 173 |
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[1136] | 174 | void FitsFile::printerror(int& status, char* texte)
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| 175 | //*****************************************************/
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| 176 | //* Print out cfitsio error messages and exit program */
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| 177 | //*****************************************************/
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| 178 | {
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| 179 | // print out cfitsio error messages and exit program
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| 180 | // print error report
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| 181 | fits_report_error(stderr, status);
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| 182 | cout << " erreur:: " << texte << endl;
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| 183 | throw IOExc("FitsFile:: error FITSIO status");
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| 184 | }
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| 185 |
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| 186 | void FitsFile::ResetStatus(int& status)
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| 187 | {
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| 188 | fits_status_ = status;
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| 189 | status = 0;
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| 190 | }
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| 191 |
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[1209] | 192 | string FitsFile::GetErrStatus(int status)
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[1136] | 193 | {
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| 194 | char text[31];
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| 195 | fits_get_errstatus(status, text);
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| 196 | return string(text);
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| 197 | }
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| 198 |
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[1218] | 199 | /*!
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| 200 | \class SOPHYA::FitsInFile
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| 201 |
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| 202 | class for saving SOPHYA objects on FITS Format Files (uses cfitsio lib)
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| 203 | */
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| 204 |
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[1136] | 205 | FitsInFile::FitsInFile()
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| 206 | {
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| 207 | InitNull();
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| 208 | }
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[1218] | 209 |
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[1136] | 210 | FitsInFile::FitsInFile(char flnm[])
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| 211 | {
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[1175] | 212 | InitNull();
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| 213 | int status = 0;
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| 214 | fits_open_file(&fptr_,flnm,READONLY,&status);
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| 215 | if( status ) printerror( status );
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[1136] | 216 | }
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| 217 |
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| 218 |
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| 219 | void FitsInFile::InitNull()
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| 220 | {
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[1175] | 221 |
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[1045] | 222 | bitpix_ = 0;
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| 223 | naxis_ = 0;
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| 224 | nbData_ = 0;
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| 225 | nrows_ = 0;
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| 226 | nbcols_ = 0;
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| 227 | naxisn_.clear();
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| 228 | repeat_.clear();
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| 229 | noms_.clear();
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| 230 | taille_des_chaines_.clear();
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| 231 | dvl_.Clear();
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[1175] | 232 |
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| 233 |
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[1045] | 234 | }
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| 235 |
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[1218] | 236 | //////////////////////////////////////////////////////////
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| 237 | // methods with general purpose
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| 238 | /////////////////////////////////////////////////////////
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[1045] | 239 |
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[1136] | 240 | int FitsInFile::NbBlocks(char flnm[])
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[903] | 241 | {
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| 242 | int status = 0;
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| 243 | int nbhdu = 0;
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| 244 | fitsfile* fileptr;
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| 245 | fits_open_file(&fileptr,flnm,READONLY,&status);
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| 246 | if( status ) printerror( status, "NbBlocks: erreur ouverture fichier" );
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| 247 | fits_get_num_hdus(fileptr, &nbhdu, &status);
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| 248 | fits_close_file(fileptr,&status);
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| 249 | return nbhdu;
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| 250 | }
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| 251 |
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[1209] | 252 | void FitsInFile::GetBlockType(char flnm[], int hdunum, string& typeOfExtension, int& naxis, vector<int>& naxisn, string& dataType, DVList& dvl )
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[903] | 253 | {
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| 254 | int status = 0;
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| 255 | fitsfile* fileptr;
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| 256 | fits_open_file(&fileptr,flnm,READONLY,&status);
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[1209] | 257 | if( status ) printerror( status, "GetBlockType: erreur ouverture fichier" );
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[903] | 258 | // move to the specified HDU number
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| 259 | int hdutype = 0;
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| 260 | fits_movabs_hdu(fileptr,hdunum,&hdutype,&status);
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[1209] | 261 | if( status ) printerror( status,"GetBlockType: erreur movabs");
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[903] | 262 | if(hdutype == IMAGE_HDU)
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| 263 | {
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| 264 | typeOfExtension = "IMAGE";
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| 265 | int bitpix;
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| 266 | GetImageParameters (fileptr, bitpix, naxis, naxisn);
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| 267 | if(bitpix == DOUBLE_IMG) dataType = "double";
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| 268 | else
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| 269 | if(bitpix == FLOAT_IMG) dataType = "float";
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| 270 | else
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| 271 | if(bitpix == LONG_IMG || bitpix == SHORT_IMG ) dataType = "int";
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| 272 | else
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| 273 | {
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| 274 | cout << " bitpix= " << bitpix << endl;
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[1209] | 275 | throw PException(" FitsFile::GetBlockType : unsupprted FITS data type");
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[903] | 276 | }
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| 277 |
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| 278 | }
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| 279 | else
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| 280 | if(hdutype == ASCII_TBL || hdutype == BINARY_TBL)
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| 281 | {
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| 282 | int nrows = 0;
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| 283 | vector<string> noms;
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| 284 | vector<char> types;
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| 285 | vector<int> taille_des_chaines;
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[971] | 286 | GetBinTabParameters(fileptr, naxis, nrows, naxisn, noms, types, taille_des_chaines);
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| 287 | int k;
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| 288 | for (k=0; k< naxisn.size(); k++) naxisn[k] *= nrows;
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[903] | 289 | if(hdutype == ASCII_TBL)
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| 290 | {
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| 291 | typeOfExtension = "ASCII_TBL";
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| 292 | dataType = "ASCII";
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| 293 | }
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| 294 | else
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| 295 | {
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| 296 | typeOfExtension = "BINARY_TBL";
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| 297 | if(types[0] == 'D') dataType = "double";
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| 298 | else
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| 299 | if(types[0] == 'E') dataType = "float";
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| 300 | else
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| 301 | if(types[0] == 'I' ) dataType = "int";
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| 302 | else
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| 303 | if(types[0] == 'S' ) dataType = "char*";
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| 304 | else
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| 305 | {
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| 306 | cout << " types[0]= " << types[0] << endl;
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[1209] | 307 | throw PException(" FitsFile::GetBlockType : unsupprted FITS data type");
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[903] | 308 | }
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| 309 | }
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| 310 | }
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| 311 | else
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| 312 | {
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| 313 | cout << " hdutype= " << hdutype << endl;
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[1209] | 314 | throw IOExc("FitsFile::GetBlockType: this HDU type is unknown");
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[903] | 315 | }
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| 316 |
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[971] | 317 | KeywordsIntoDVList(fileptr, dvl, hdunum);
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[903] | 318 | fits_close_file(fileptr,&status);
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| 319 | }
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| 320 |
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[1136] | 321 |
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| 322 | void FitsInFile::ReadFInit(int hdunum)
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[1045] | 323 | {
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[1143] | 324 | InitNull();
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[1136] | 325 | // int status = 0;
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| 326 |
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| 327 | // fits_open_file(&fptr_,flnm,READONLY,&status);
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| 328 | // if( status ) printerror( status );
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| 329 |
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[1045] | 330 | int status = 0;
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[1136] | 331 |
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[1045] | 332 | if (hdunum <= 1)
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| 333 | {
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| 334 | hdunum_ = 1;
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| 335 | // presence of image ?
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| 336 | int naxis= 0;
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| 337 | fits_read_key(fptr_,TINT,"NAXIS",&naxis,NULL,&status);
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| 338 | if( status ) printerror( status );
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| 339 | if (naxis > 0 ) // there is an image
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| 340 | {
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| 341 | hdutype_ = IMAGE_HDU;
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| 342 | GetImageParameters (fptr_, bitpix_, naxis_, naxisn_);
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| 343 | nbData_ = 1;
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| 344 | int k;
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| 345 | for (k=0; k<naxis_; k++) if (naxisn_[k] > 0) nbData_ *= naxisn_[k];
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| 346 | KeywordsIntoDVList(fptr_, dvl_,hdunum_);
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| 347 | }
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| 348 | else
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| 349 | {
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| 350 | throw PException(" first header : no image, probably error in hdunum");
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| 351 | }
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| 352 | //
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| 353 | }
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| 354 | else
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| 355 | {
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| 356 | hdunum_ = hdunum-1;
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| 357 | int hdutype;
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| 358 | fits_movabs_hdu(fptr_,hdunum_,&hdutype,&status);
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| 359 | if( status ) printerror( status,":FitsFile::ReadF : erreur movabs");
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| 360 | moveToFollowingHeader();
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| 361 | }
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| 362 | }
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| 363 |
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[1218] | 364 |
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| 365 | void FitsInFile::GetImageParameters (fitsfile* fileptr,int& bitpix,int& naxis,vector<int>& naxisn)
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| 366 | {
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| 367 | int hdunum=0;
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| 368 | cout << " Reading a FITS image in HDU : " << fits_get_hdu_num(fileptr,&hdunum) << endl;
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| 369 | int status= 0;
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| 370 |
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| 371 | // bits per pixels
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| 372 | fits_read_key(fileptr,TINT,"BITPIX",&bitpix,NULL,&status);
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| 373 | if( status ) printerror( status );
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| 374 |
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| 375 | // number of dimensions in the FITS array
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| 376 | naxis= 0;
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| 377 | fits_read_key(fileptr,TINT,"NAXIS",&naxis,NULL,&status);
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| 378 | if( status ) printerror( status );
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| 379 | // read the NAXISn keywords to get image size
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| 380 | long* naxes = new long[naxis] ;
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| 381 | int nfound;
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| 382 | fits_read_keys_lng(fileptr,"NAXIS",1,naxis,naxes,&nfound,&status);
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| 383 | if( status ) printerror( status );
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| 384 | if (nfound != naxis )
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| 385 | cout << " WARNING : " << nfound << " axes found, expected naxis= " << naxis << endl;
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| 386 | int k;
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| 387 | for (k=0; k<naxis; k++)
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| 388 | {
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| 389 | naxisn.push_back( (int)naxes[k] );
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| 390 | }
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| 391 | delete [] naxes;
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| 392 | }
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| 393 |
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| 394 |
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| 395 |
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| 396 |
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| 397 | /*! \fn DVList SOPHYA::FitsInFile::DVListFromPrimaryHeader() const
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| 398 |
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| 399 | \return the keywords of primary header in a DVList
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| 400 |
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| 401 | */
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[1143] | 402 | DVList FitsInFile::DVListFromPrimaryHeader() const
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| 403 | {
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| 404 | int status;
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| 405 | DVList dvl;
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| 406 | KeywordsIntoDVList(fptr_, dvl, 1);
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| 407 | int hdutype = 0;
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| 408 | if (hdunum_ > 0) fits_movabs_hdu(fptr_,hdunum_,&hdutype,&status);
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| 409 | return dvl;
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| 410 | }
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[1136] | 411 |
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| 412 |
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| 413 | void FitsInFile::moveToFollowingHeader()
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[971] | 414 | {
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| 415 | int status = 0;
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[839] | 416 | int hdutype;
|
---|
[1143] | 417 | InitNull();
|
---|
[971] | 418 | fits_movrel_hdu(fptr_, 1,&hdutype,&status);
|
---|
| 419 | if( status ) printerror( status," lecture du header suivant" );
|
---|
| 420 | hdunum_++;
|
---|
[839] | 421 | hdutype_= hdutype;
|
---|
| 422 | if(hdutype_ == IMAGE_HDU)
|
---|
| 423 | {
|
---|
[903] | 424 | GetImageParameters (fptr_, bitpix_, naxis_, naxisn_);
|
---|
| 425 | nbData_ = 1;
|
---|
[971] | 426 | int k;
|
---|
| 427 | for (k=0; k<naxis_; k++) if (naxisn_[k] > 0) nbData_ *= naxisn_[k];
|
---|
| 428 | KeywordsIntoDVList(fptr_, dvl_,hdunum_);
|
---|
[839] | 429 | }
|
---|
| 430 | if(hdutype_ == ASCII_TBL || hdutype_ == BINARY_TBL)
|
---|
| 431 | {
|
---|
[903] | 432 | GetBinTabParameters(fptr_,nbcols_, nrows_,repeat_, noms_, types_, taille_des_chaines_);
|
---|
[971] | 433 | KeywordsIntoDVList(fptr_, dvl_, hdunum_);
|
---|
[839] | 434 | }
|
---|
[971] | 435 | }
|
---|
[839] | 436 |
|
---|
[1136] | 437 |
|
---|
[1218] | 438 |
|
---|
| 439 |
|
---|
| 440 |
|
---|
| 441 | /*! \fn int SOPHYA::FitsInFile::NbColsFromFits() const
|
---|
| 442 | \return number of columns (return 1 if IMAGE)
|
---|
| 443 | */
|
---|
[1136] | 444 | int FitsInFile::NbColsFromFits() const
|
---|
[839] | 445 | {
|
---|
[1136] | 446 | if(hdutype_ == BINARY_TBL) return nbcols_;
|
---|
[971] | 447 | else
|
---|
[1136] | 448 | if(hdutype_ == ASCII_TBL || hdutype_ == IMAGE_HDU) return 1;
|
---|
[839] | 449 | else
|
---|
| 450 | {
|
---|
[1136] | 451 | cout << " hdutype= " << hdutype_ << endl;
|
---|
| 452 | throw PException("FitsFile::NbColsFromFits, this HDU is unknown");
|
---|
[839] | 453 | }
|
---|
| 454 | }
|
---|
| 455 |
|
---|
[1218] | 456 | /*! \fn int SOPHYA::FitsInFile::NentriesFromFits(int nocol) const
|
---|
| 457 | \return number of data in the current IMAGE extension on FITS file, or number
|
---|
| 458 | of data of column number 'nocol' of the current BINTABLE extension
|
---|
| 459 | */
|
---|
[1136] | 460 | int FitsInFile::NentriesFromFits(int nocol) const
|
---|
[839] | 461 | {
|
---|
[1136] | 462 | if(hdutype_ == BINARY_TBL ) return nrows_*repeat_[nocol];
|
---|
| 463 | else
|
---|
| 464 | if(hdutype_ == ASCII_TBL) return nrows_;
|
---|
| 465 | else
|
---|
| 466 | if(hdutype_ == IMAGE_HDU) return nbData_;
|
---|
| 467 | else
|
---|
[839] | 468 | {
|
---|
[1136] | 469 | cout << "hdutype= " << hdutype_ << endl;
|
---|
| 470 | throw PException("FitsFile::NentriesFromFits, this HDU is unknown");
|
---|
[839] | 471 | }
|
---|
| 472 | }
|
---|
| 473 |
|
---|
[1218] | 474 | /*! \fn char SOPHYA::FitsInFile::ColTypeFromFits(int nocol) const
|
---|
| 475 |
|
---|
| 476 | return a character denoting data type of column number 'nocol' in a BINTABLE :
|
---|
| 477 |
|
---|
| 478 | D : double
|
---|
| 479 |
|
---|
| 480 | E : float
|
---|
| 481 |
|
---|
| 482 | I : integer
|
---|
| 483 |
|
---|
| 484 | S : character string
|
---|
| 485 |
|
---|
| 486 | */
|
---|
| 487 |
|
---|
[1136] | 488 | char FitsInFile::ColTypeFromFits(int nocol) const
|
---|
[839] | 489 | {
|
---|
[1136] | 490 | if(hdutype_ != ASCII_TBL && hdutype_ != BINARY_TBL)
|
---|
[839] | 491 | {
|
---|
[1136] | 492 | throw IOExc("FitsFile::TypeFromFits, this HDU is not an ASCII table nor a binary table");
|
---|
[839] | 493 | }
|
---|
[1136] | 494 | return types_[nocol];
|
---|
[839] | 495 | }
|
---|
[1218] | 496 |
|
---|
| 497 |
|
---|
| 498 | /*! \fn string SOPHYA::FitsInFile::ColNameFromFits(int nocol) const
|
---|
| 499 |
|
---|
| 500 | \return name of the column number 'nocol' of the current BINTABLE extension
|
---|
| 501 | */
|
---|
| 502 |
|
---|
[1136] | 503 | string FitsInFile::ColNameFromFits(int nocol) const
|
---|
[839] | 504 | {
|
---|
[1136] | 505 | if(hdutype_ != ASCII_TBL && hdutype_ != BINARY_TBL)
|
---|
[1045] | 506 | {
|
---|
[1136] | 507 | throw IOExc("FitsFile::TypeFromFits, this HDU is not an ASCII table nor a binary table");
|
---|
[1045] | 508 | }
|
---|
[1136] | 509 | return noms_[nocol];
|
---|
[839] | 510 | }
|
---|
| 511 |
|
---|
[1218] | 512 | /*! \fn int DSOPHYA::FitsInFile::ColStringLengthFromFits(int nocol) const
|
---|
| 513 |
|
---|
| 514 | \return number of characters of each data for the column number 'nocol' (if char* typed) of the current BINTABLE extension
|
---|
| 515 | */
|
---|
| 516 |
|
---|
[1136] | 517 | int FitsInFile::ColStringLengthFromFits(int nocol) const
|
---|
[839] | 518 | {
|
---|
[1136] | 519 | if(hdutype_ != ASCII_TBL && hdutype_ != BINARY_TBL)
|
---|
| 520 | {
|
---|
| 521 | throw IOExc("FitsFile::TypeFromFits, this HDU is not an ASCII table nor a binary table");
|
---|
| 522 | }
|
---|
| 523 | int index=-1;
|
---|
| 524 | int k;
|
---|
| 525 | for (k=0; k<=nocol; k++)
|
---|
| 526 | {
|
---|
| 527 | if (types_[k] == 'S') index++;
|
---|
| 528 | }
|
---|
| 529 | return taille_des_chaines_[index];
|
---|
[839] | 530 | }
|
---|
[1218] | 531 |
|
---|
| 532 |
|
---|
| 533 |
|
---|
| 534 | /*! \fn void SOPHYA::FitsInFile::GetBinTabLine(int NoLine, double* ddata, float* fdata, int* idata, char ** cdata)
|
---|
| 535 |
|
---|
| 536 | Get the NoLine-th 'line' from the current BINTABLE extension on FITS file,
|
---|
| 537 | */
|
---|
| 538 |
|
---|
[1193] | 539 | void FitsInFile::GetBinTabLine(int NoLine, double* ddata, float* fdata, int* idata, char ** cdata)
|
---|
[839] | 540 | {
|
---|
| 541 | int status= 0;
|
---|
[1136] | 542 | int anull;
|
---|
| 543 | double dnull= 0.;
|
---|
| 544 | float fnull= 0.;
|
---|
| 545 | int inull= 0;
|
---|
| 546 | char* cnull= "";
|
---|
| 547 | int dcount = 0.;
|
---|
| 548 | int fcount = 0.;
|
---|
| 549 | int icount = 0;
|
---|
| 550 | int ccount =0;
|
---|
| 551 | int ncol;
|
---|
| 552 | long nels=1;
|
---|
| 553 | for (ncol=0; ncol<nbcols_; ncol++)
|
---|
[861] | 554 | {
|
---|
[1136] | 555 | switch (types_[ncol])
|
---|
| 556 | {
|
---|
| 557 | case 'D' :
|
---|
| 558 | fits_read_col(fptr_,TDOUBLE,ncol+1,NoLine+1,1,1,&dnull,&ddata[dcount++],&anull,&status);
|
---|
| 559 | break;
|
---|
| 560 | case 'E' :
|
---|
| 561 | fits_read_col(fptr_,TFLOAT,ncol+1,NoLine+1,1,1,&fnull,&fdata[fcount++],&anull,&status);
|
---|
| 562 | break;
|
---|
| 563 | case 'I' :
|
---|
| 564 | fits_read_col(fptr_,TINT,ncol+1,NoLine+1,1,1,&inull,&idata[icount++],
|
---|
| 565 | &anull,&status);
|
---|
| 566 | break;
|
---|
| 567 | case 'S' :
|
---|
| 568 | fits_read_col(fptr_,TSTRING,ncol+1,NoLine+1,1,1,cnull,&cdata[ccount++],&anull,&status);
|
---|
| 569 | break;
|
---|
| 570 | }
|
---|
| 571 | if (status)
|
---|
| 572 | {
|
---|
| 573 | ResetStatus(status);
|
---|
| 574 | break;
|
---|
| 575 | }
|
---|
[861] | 576 | }
|
---|
[903] | 577 | }
|
---|
[839] | 578 |
|
---|
[1218] | 579 | /*! \fn void SOPHYA::FitsInFile::GetBinTabLine(long NoLine, BnTblLine& ligne)
|
---|
| 580 | Get the NoLine-th 'line' from the current BINTABLE extension on FITS file,
|
---|
| 581 | */
|
---|
[1193] | 582 | void FitsInFile::GetBinTabLine(long NoLine, BnTblLine& ligne)
|
---|
| 583 | {
|
---|
| 584 | int status= 0;
|
---|
| 585 | int anull;
|
---|
| 586 | double dnull= 0.;
|
---|
| 587 | float fnull= 0.;
|
---|
| 588 | int inull= 0;
|
---|
| 589 | char* cnull= "";
|
---|
| 590 | int dcount = 0.;
|
---|
| 591 | int fcount = 0.;
|
---|
| 592 | int icount = 0;
|
---|
| 593 | int ccount =0;
|
---|
| 594 | int ncol;
|
---|
| 595 | long nels=1;
|
---|
| 596 | for (ncol=0; ncol<nbcols_; ncol++)
|
---|
| 597 | {
|
---|
| 598 | switch (types_[ncol])
|
---|
| 599 | {
|
---|
| 600 | case 'D' :
|
---|
| 601 | fits_read_col(fptr_,TDOUBLE,ncol+1,NoLine+1,1,1,&dnull,&ligne.ddata_[dcount++],&anull,&status);
|
---|
| 602 | break;
|
---|
| 603 | case 'E' :
|
---|
| 604 | fits_read_col(fptr_,TFLOAT,ncol+1,NoLine+1,1,1,&fnull,&ligne.fdata_[fcount++],&anull,&status);
|
---|
| 605 | break;
|
---|
| 606 | case 'I' :
|
---|
| 607 | fits_read_col(fptr_,TINT,ncol+1,NoLine+1,1,1,&inull,&ligne.idata_[icount++],
|
---|
| 608 | &anull,&status);
|
---|
| 609 | break;
|
---|
| 610 | case 'S' :
|
---|
| 611 | char* chaine = new char[taille_des_chaines_[ccount]];
|
---|
| 612 | fits_read_col(fptr_,TSTRING,ncol+1,NoLine+1,1,1,cnull,&chaine,&anull,&status);
|
---|
| 613 | ligne.cdata_[ccount++] = string(chaine);
|
---|
| 614 | break;
|
---|
| 615 | }
|
---|
| 616 | if (status)
|
---|
| 617 | {
|
---|
| 618 | ResetStatus(status);
|
---|
| 619 | break;
|
---|
| 620 | }
|
---|
| 621 | }
|
---|
| 622 | }
|
---|
| 623 |
|
---|
[1218] | 624 | /*! \fn void SOPHYA::FitsInFile::GetBinTabLine(int NoLine, float* fdata)
|
---|
| 625 |
|
---|
| 626 | Get the NoLine-th float 'line' from the current BINTABLE extension on FITS file,
|
---|
| 627 | */
|
---|
[1136] | 628 | void FitsInFile::GetBinTabLine(int NoLine, float* fdata)
|
---|
[903] | 629 | {
|
---|
[1136] | 630 | int status= 0;
|
---|
| 631 | int anull;
|
---|
| 632 | float fnull= 0.;
|
---|
| 633 | long nels=1;
|
---|
| 634 | int ncol;
|
---|
| 635 | for (ncol=0; ncol<nbcols_; ncol++)
|
---|
[861] | 636 | {
|
---|
[1136] | 637 | fits_read_col(fptr_,TFLOAT,ncol+1,NoLine+1,1,1,&fnull,&fdata[ncol],&anull,&status);
|
---|
| 638 | if (status)
|
---|
[903] | 639 | {
|
---|
[1136] | 640 | ResetStatus(status);
|
---|
| 641 | break;
|
---|
[903] | 642 | }
|
---|
[1136] | 643 | }
|
---|
| 644 | }
|
---|
[839] | 645 |
|
---|
[903] | 646 |
|
---|
[1218] | 647 | /*! \fn void SPOPHYA::FitsInFile::GetBinTabFCol(double* valeurs,int nentries, int NoCol) const
|
---|
| 648 |
|
---|
| 649 | fill the array 'valeurs' with double data from the current BINTABLE extension on FITS file, from column number 'NoCol'
|
---|
| 650 |
|
---|
| 651 | \param <nentries> number of data to be read
|
---|
| 652 | */
|
---|
[1136] | 653 | void FitsInFile::GetBinTabFCol(double* valeurs,int nentries, int NoCol) const
|
---|
[839] | 654 | {
|
---|
| 655 | int status= 0;
|
---|
| 656 | int DTYPE;
|
---|
| 657 | long repeat,width;
|
---|
| 658 | fits_get_coltype(fptr_, NoCol+1,&DTYPE,&repeat,&width,&status);
|
---|
| 659 | if( DTYPE != TDOUBLE)
|
---|
| 660 | {
|
---|
[1045] | 661 | if (DTYPE == TFLOAT) cout << " WARNING: reading double from float : conversion will be made by fitsio library" << endl;
|
---|
| 662 | else
|
---|
| 663 | throw IOExc("FitsFile::GetBinTabFCol, tentative de lecture non double");
|
---|
[839] | 664 | }
|
---|
| 665 | long nels=nentries;
|
---|
[971] | 666 | int anull;
|
---|
[839] | 667 | // no checking for undefined pixels
|
---|
[971] | 668 | double dnull= 0.;
|
---|
| 669 | // fits_read_key(fptr_,TDOUBLE,"BAD_DATA",&dnull,NULL,&status);
|
---|
| 670 | // if (status != 0)
|
---|
| 671 | // {
|
---|
| 672 | // dnull = -1.6375e30; // default value
|
---|
| 673 | // status = 0;
|
---|
| 674 | // }
|
---|
| 675 | if (nentries != nrows_*repeat)
|
---|
| 676 | {
|
---|
| 677 | cout << " found " << nentries << " pixels, expected: " << nrows_*repeat << endl;
|
---|
| 678 | throw PException(" FitsFile:::GetBinTabFCol ");
|
---|
| 679 | }
|
---|
[839] | 680 | fits_read_col(fptr_,TDOUBLE,NoCol+1,1,1,nels,&dnull,valeurs,
|
---|
| 681 | &anull,&status);
|
---|
| 682 | if( status ) printerror( status,"erreur lecture de colonne" );
|
---|
[971] | 683 |
|
---|
[839] | 684 | }
|
---|
| 685 |
|
---|
[1218] | 686 | /*! \fn void SOPHYA::FitsInFile::GetBinTabFCol(float* valeurs,int nentries, int NoCol) const
|
---|
| 687 |
|
---|
| 688 | same as previous method with float data
|
---|
| 689 | */
|
---|
[1136] | 690 | void FitsInFile::GetBinTabFCol(float* valeurs,int nentries, int NoCol) const
|
---|
[839] | 691 | {
|
---|
| 692 | int status= 0;
|
---|
| 693 | int DTYPE;
|
---|
| 694 | long repeat,width;
|
---|
| 695 | fits_get_coltype(fptr_, NoCol+1,&DTYPE,&repeat,&width,&status);
|
---|
| 696 | if( DTYPE != TFLOAT)
|
---|
| 697 | {
|
---|
[1045] | 698 | if (DTYPE == TDOUBLE) cout << " WARNING: reading float from double : conversion will be made by fitsio library" << endl;
|
---|
| 699 | else
|
---|
| 700 | throw IOExc("FitsFile::GetBinTabFCol, tentative de lecture non float");
|
---|
[839] | 701 | }
|
---|
| 702 | long nels=nentries;
|
---|
[971] | 703 | int anull;
|
---|
[839] | 704 | // no checking for undefined pixels
|
---|
| 705 | float fnull= 0.;
|
---|
[971] | 706 | // fits_read_key(fptr_,TFLOAT,"BAD_DATA",&fnull,NULL,&status);
|
---|
| 707 | // if (status != 0)
|
---|
| 708 | // {
|
---|
| 709 | // fnull = -1.6375e30; // default value
|
---|
| 710 | // status = 0;
|
---|
| 711 | // }
|
---|
| 712 | if (nentries != nrows_*repeat)
|
---|
| 713 | {
|
---|
| 714 | cout << " found " << nentries << " pixels, expected: " << nrows_*repeat << endl;
|
---|
| 715 | throw PException(" FitsFile:::GetBinTabFCol ");
|
---|
| 716 | }
|
---|
[839] | 717 | fits_read_col(fptr_,TFLOAT,NoCol+1,1,1,nels,&fnull,valeurs,
|
---|
| 718 | &anull,&status);
|
---|
| 719 | if( status ) printerror( status,"erreur lecture de colonne" );
|
---|
| 720 | }
|
---|
[1136] | 721 |
|
---|
[1218] | 722 | /*! \fn void SOPHYA::FitsInFile::GetBinTabFCol(int* valeurs,int nentries, int NoCol) const
|
---|
| 723 |
|
---|
| 724 | same as previous method with int data
|
---|
| 725 | */
|
---|
| 726 |
|
---|
[1136] | 727 | void FitsInFile::GetBinTabFCol(int* valeurs,int nentries, int NoCol) const
|
---|
[839] | 728 | {
|
---|
| 729 | int status= 0;
|
---|
| 730 | int DTYPE;
|
---|
| 731 | long repeat,width;
|
---|
| 732 | fits_get_coltype(fptr_, NoCol+1,&DTYPE,&repeat,&width,&status);
|
---|
| 733 | if( DTYPE != TLONG && DTYPE != TINT && DTYPE != TSHORT )
|
---|
| 734 | {
|
---|
| 735 | throw IOExc("FitsFile::GetBinTabFCol, tentative de lecture non entier");
|
---|
| 736 | }
|
---|
| 737 | long nels=nentries;
|
---|
| 738 | // no checking for undefined pixels
|
---|
| 739 | int anull;
|
---|
| 740 | int inull= 0;
|
---|
[971] | 741 | // fits_read_key(fptr_,TINT,"BAD_DATA",&inull,NULL,&status);
|
---|
| 742 | // if (status != 0)
|
---|
| 743 | // {
|
---|
| 744 | // inull = -999999; // default value
|
---|
| 745 | // status = 0;
|
---|
| 746 | // }
|
---|
| 747 | if (nentries != nrows_*repeat)
|
---|
| 748 | {
|
---|
| 749 | cout << " found " << nentries << " pixels, expected: " << nrows_*repeat << endl;
|
---|
| 750 | throw PException(" FitsFile:::GetBinTabFCol ");
|
---|
| 751 | }
|
---|
[839] | 752 | fits_read_col(fptr_,TINT,NoCol+1,1,1,nels,&inull,valeurs,
|
---|
| 753 | &anull,&status);
|
---|
| 754 | if( status ) printerror( status,"erreur lecture de colonne" );
|
---|
| 755 | }
|
---|
[1136] | 756 |
|
---|
[1218] | 757 | /*! \fn void SOPHYA::FitsInFile::GetBinTabFCol(char** valeurs, int nentries, int NoCol) const
|
---|
| 758 |
|
---|
| 759 | same as previous method with char* data
|
---|
| 760 | */
|
---|
| 761 |
|
---|
[1136] | 762 | void FitsInFile::GetBinTabFCol(char** valeurs, int nentries, int NoCol) const
|
---|
[839] | 763 | {
|
---|
| 764 | int status= 0;
|
---|
| 765 | int DTYPE;
|
---|
| 766 | long repeat,width;
|
---|
| 767 | fits_get_coltype(fptr_, NoCol+1,&DTYPE,&repeat,&width,&status);
|
---|
| 768 | if( DTYPE != TSTRING )
|
---|
| 769 | {
|
---|
| 770 | throw IOExc("FitsFile::GetBinTabFCol, tentative de lecture non float");
|
---|
| 771 | }
|
---|
| 772 | long nels=nentries;
|
---|
| 773 | // no checking for undefined pixels
|
---|
| 774 | int anull;
|
---|
[971] | 775 | char* cnull= "";
|
---|
| 776 | if (nentries != nrows_*repeat/width)
|
---|
| 777 | {
|
---|
| 778 | cout << " found " << nentries << " pixels, expected: " << nrows_*repeat/width << endl;
|
---|
| 779 | throw PException(" FitsFile:::GetBinTabFCol ");
|
---|
| 780 | }
|
---|
[839] | 781 | long frow=1;
|
---|
| 782 | long felem=1;
|
---|
| 783 | fits_read_col(fptr_,TSTRING,NoCol+1,frow,felem,nels,cnull,valeurs,
|
---|
| 784 | &anull,&status);
|
---|
| 785 | if( status ) printerror( status,"erreur lecture de colonne" );
|
---|
| 786 | }
|
---|
[1045] | 787 |
|
---|
[1218] | 788 | /*! \fn void SOPHYA::FitsInFile::GetSingleColumn(double* map, int nentries) const
|
---|
| 789 | fill the array 'map' with double data from the current extension on FITS file.
|
---|
| 790 | If the extension is BINTABLE, the first column is provided.
|
---|
| 791 |
|
---|
| 792 | \param <nentries> number of data to be read
|
---|
| 793 | */
|
---|
[1136] | 794 | void FitsInFile::GetSingleColumn(double* map, int nentries) const
|
---|
| 795 | {
|
---|
| 796 | int status = 0;
|
---|
| 797 | if(hdutype_ == IMAGE_HDU)
|
---|
[1045] | 798 | {
|
---|
[1136] | 799 |
|
---|
| 800 | if(bitpix_ != DOUBLE_IMG)
|
---|
[1047] | 801 | {
|
---|
[1136] | 802 | cout << " The data type on fits file is not double...";
|
---|
| 803 | cout << " Conversion to double achieved by cfitsio lib" << endl;
|
---|
[1047] | 804 | }
|
---|
[1136] | 805 |
|
---|
| 806 | // no checking for undefined pixels
|
---|
| 807 | int anull;
|
---|
| 808 | double dnull= 0.;
|
---|
| 809 |
|
---|
| 810 | long nels= nentries;
|
---|
| 811 | fits_read_img(fptr_,TDOUBLE,1,nels,&dnull,map,&anull,&status);
|
---|
| 812 | if( status ) printerror( status );
|
---|
[1045] | 813 | }
|
---|
[1136] | 814 | else
|
---|
| 815 | if(hdutype_ == ASCII_TBL || hdutype_ == BINARY_TBL)
|
---|
| 816 | {
|
---|
| 817 | GetBinTabFCol(map,nentries, 0);
|
---|
| 818 | }
|
---|
| 819 | else
|
---|
| 820 | {
|
---|
| 821 | cout << " hdutype= " << hdutype_ << endl;
|
---|
| 822 | throw IOExc("FitsFile::GetSingleColumn this HDU is unknown");
|
---|
| 823 | }
|
---|
[1045] | 824 | }
|
---|
| 825 |
|
---|
[1218] | 826 | /*! \fn void SOPHYA::FitsInFile::GetSingleColumn(float* map, int nentries) const
|
---|
| 827 | same as above with float data
|
---|
| 828 | */
|
---|
[1136] | 829 | void FitsInFile::GetSingleColumn(float* map, int nentries) const
|
---|
[1045] | 830 | {
|
---|
[1136] | 831 | int status = 0;
|
---|
| 832 | if(hdutype_ == IMAGE_HDU)
|
---|
[1045] | 833 | {
|
---|
[1136] | 834 | if(bitpix_ != FLOAT_IMG)
|
---|
[1047] | 835 | {
|
---|
[1136] | 836 | cout << " The data type on fits file is not float ";
|
---|
| 837 | cout << " Conversion to float achieved by cfitsio lib" << endl;
|
---|
[1047] | 838 | }
|
---|
[1136] | 839 | // no checking for undefined pixels
|
---|
| 840 | int anull;
|
---|
| 841 | float fnull= 0.;
|
---|
| 842 |
|
---|
| 843 | long nels= nentries;
|
---|
| 844 | fits_read_img(fptr_,TFLOAT,1,nels,&fnull, map,&anull,&status);
|
---|
| 845 | if( status ) printerror( status );
|
---|
[1045] | 846 | }
|
---|
[839] | 847 | else
|
---|
[1136] | 848 | if(hdutype_ == ASCII_TBL || hdutype_ == BINARY_TBL)
|
---|
| 849 | {
|
---|
| 850 | GetBinTabFCol(map,nentries, 0);
|
---|
| 851 | }
|
---|
[839] | 852 | else
|
---|
| 853 | {
|
---|
[1136] | 854 | cout << " hdutype= " << hdutype_ << endl;
|
---|
| 855 | throw IOExc("FitsFile::GetSingleColumn this HDU is unknown");
|
---|
[839] | 856 | }
|
---|
| 857 | }
|
---|
| 858 |
|
---|
[1218] | 859 | /*! \fn void SOPHYA::FitsInFile::GetSingleColumn( int* map, int nentries) const
|
---|
| 860 | same as above with int data
|
---|
| 861 | */
|
---|
[1136] | 862 | void FitsInFile::GetSingleColumn( int* map, int nentries) const
|
---|
[839] | 863 | {
|
---|
[1136] | 864 | int status = 0;
|
---|
| 865 | if(hdutype_ == IMAGE_HDU)
|
---|
[839] | 866 | {
|
---|
[1136] | 867 | if(bitpix_ != LONG_IMG)
|
---|
| 868 | {
|
---|
| 869 | cout << " The data type on fits file is not int ";
|
---|
| 870 | cout << " Conversion to float achieved by cfitsio lib" << endl;
|
---|
| 871 | }
|
---|
| 872 | // no checking for undefined pixels
|
---|
| 873 | int anull;
|
---|
| 874 | float fnull= 0.;
|
---|
| 875 |
|
---|
| 876 | long nels= nentries;
|
---|
| 877 | fits_read_img(fptr_,TINT,1,nels,&fnull,map,&anull,&status);
|
---|
| 878 | if( status ) printerror( status );
|
---|
[839] | 879 | }
|
---|
| 880 | else
|
---|
[1136] | 881 | if(hdutype_ == ASCII_TBL || hdutype_ == BINARY_TBL)
|
---|
| 882 | {
|
---|
| 883 | GetBinTabFCol(map,nentries, 0);
|
---|
| 884 | }
|
---|
[839] | 885 | else
|
---|
[1136] | 886 | {
|
---|
| 887 | cout << " hdutype= " << hdutype_ << endl;
|
---|
| 888 | throw IOExc("FitsFile::GetSingleColumn this HDU is unknown");
|
---|
| 889 | }
|
---|
[839] | 890 | }
|
---|
| 891 |
|
---|
[1136] | 892 | void FitsInFile::GetBinTabParameters(fitsfile* fileptr, int& nbcols, int& nrows,
|
---|
[903] | 893 | vector<int>& repeat,
|
---|
| 894 | vector<string>& noms,
|
---|
| 895 | vector<char>& types,
|
---|
| 896 | vector<int>& taille_des_chaines)
|
---|
[839] | 897 | {
|
---|
| 898 | int status= 0;
|
---|
[903] | 899 | int hdunum=0;
|
---|
| 900 | int hdutype=0;
|
---|
| 901 | fits_get_hdu_num(fileptr,&hdunum);
|
---|
| 902 | fits_get_hdu_type(fileptr, &hdutype, &status);
|
---|
| 903 |
|
---|
| 904 | if(hdutype != ASCII_TBL && hdutype != BINARY_TBL)
|
---|
[839] | 905 | {
|
---|
[903] | 906 | throw IOExc("FitsFile::GetBinTabParameters this HDU is not an ASCII table nor a binary table");
|
---|
[839] | 907 | }
|
---|
[903] | 908 | if(hdutype == ASCII_TBL)
|
---|
| 909 | cout << " Reading a FITS ascii table in HDU : " << hdunum << endl;
|
---|
| 910 | if(hdutype == BINARY_TBL)
|
---|
| 911 | cout << " Reading a FITS binary table in HDU : " << hdunum << endl;
|
---|
[839] | 912 |
|
---|
| 913 | // get the number of columns
|
---|
[903] | 914 | fits_get_num_cols(fileptr, &nbcols,&status);
|
---|
[839] | 915 | if( status ) printerror( status );
|
---|
| 916 |
|
---|
| 917 | // get the number of rows
|
---|
| 918 | long naxis2= 0;
|
---|
[903] | 919 | fits_get_num_rows(fileptr,&naxis2,&status);
|
---|
[839] | 920 | if( status ) printerror( status );
|
---|
[903] | 921 | nrows = (int)naxis2;
|
---|
[839] | 922 |
|
---|
| 923 | // get the datatype, names and the repeat count
|
---|
[903] | 924 | noms.clear();
|
---|
| 925 | noms.reserve(nbcols);
|
---|
| 926 | types.clear();
|
---|
| 927 | types.reserve(nbcols);
|
---|
| 928 | repeat.clear();
|
---|
| 929 | repeat.reserve(nbcols);
|
---|
| 930 | taille_des_chaines.clear();
|
---|
[839] | 931 | char **ttype = new char*[nbcols];
|
---|
[923] | 932 | int ii;
|
---|
[1175] | 933 | //
|
---|
| 934 | //
|
---|
[923] | 935 | for (ii=0; ii < nbcols; ii++) ttype[ii]=new char[FLEN_VALUE];
|
---|
[839] | 936 | int nfound;
|
---|
[903] | 937 | fits_read_keys_str(fileptr, "TTYPE",1,nbcols,ttype,&nfound, &status);
|
---|
[839] | 938 | if( status ) printerror( status,"erreur lecture des noms de colonne");
|
---|
| 939 | int rept=0;
|
---|
[923] | 940 | for(ii = 0; ii < nbcols; ii++)
|
---|
[839] | 941 | {
|
---|
| 942 | int DTYPE;
|
---|
| 943 | long width;
|
---|
[903] | 944 | long repete = 0;
|
---|
| 945 | fits_get_coltype(fileptr,ii+1,&DTYPE,&repete,&width,&status);
|
---|
[839] | 946 | if( status ) printerror( status,"erreur lecture type de colonne");
|
---|
[903] | 947 | rept = repete;
|
---|
| 948 | noms.push_back(string(ttype[ii]));
|
---|
[839] | 949 | switch (DTYPE)
|
---|
| 950 | {
|
---|
| 951 | case TDOUBLE :
|
---|
[903] | 952 | types.push_back('D');
|
---|
[839] | 953 | break;
|
---|
| 954 | case TFLOAT :
|
---|
[903] | 955 | types.push_back('E');
|
---|
[839] | 956 | break;
|
---|
| 957 | case TLONG :
|
---|
[903] | 958 | types.push_back('I');
|
---|
[839] | 959 | break;
|
---|
| 960 | case TINT :
|
---|
[903] | 961 | types.push_back('I');
|
---|
[839] | 962 | break;
|
---|
| 963 | case TSHORT :
|
---|
[903] | 964 | types.push_back('I');
|
---|
[839] | 965 | break;
|
---|
| 966 | case TSTRING :
|
---|
[903] | 967 | types.push_back('S');
|
---|
| 968 | taille_des_chaines.push_back(width);
|
---|
[839] | 969 | rept/=width;
|
---|
| 970 | break;
|
---|
| 971 | default :
|
---|
| 972 | cout << " field " << ii+1 << " DTYPE= " << DTYPE << endl;
|
---|
| 973 | throw IOExc("FitsFile:: unknown type of field");
|
---|
| 974 | }
|
---|
[903] | 975 | repeat.push_back(rept);
|
---|
[1136] | 976 | }
|
---|
| 977 | for (ii=0; ii < nbcols; ii++) delete [] ttype[ii];
|
---|
| 978 | delete [] ttype;
|
---|
| 979 | }
|
---|
| 980 |
|
---|
| 981 | void FitsInFile::KeywordsIntoDVList(fitsfile* fileptr, DVList& dvl, int hdunum)
|
---|
| 982 | {
|
---|
| 983 | int status = 0;
|
---|
| 984 | int hdutype;
|
---|
| 985 | fits_movabs_hdu(fileptr,hdunum,&hdutype,&status);
|
---|
| 986 | if( status ) printerror( status,":KeywordsIntoDVList : erreur movabs");
|
---|
| 987 | // get number of keywords
|
---|
| 988 | int nkeys,keypos;
|
---|
| 989 | fits_get_hdrpos(fileptr,&nkeys,&keypos,&status);
|
---|
| 990 | if( status ) printerror( status );
|
---|
| 991 |
|
---|
| 992 | // put keywords in a DVList object
|
---|
| 993 | char keyname[LEN_KEYWORD]= "";
|
---|
| 994 | char strval[FLEN_VALUE]= "";
|
---|
| 995 | char dtype;
|
---|
| 996 | char card[FLEN_CARD];
|
---|
| 997 | char *comkey = "COMMENT";
|
---|
[1143] | 998 | char comment[FLEN_COMMENT];
|
---|
[1136] | 999 |
|
---|
| 1000 | // shift with the number of mandatory keywords
|
---|
[1143] | 1001 | // int num= 8;
|
---|
| 1002 | int num= 0;
|
---|
| 1003 | // primary header
|
---|
| 1004 | if (hdunum == 1)
|
---|
| 1005 | {
|
---|
| 1006 | // read NAXIS
|
---|
| 1007 | int naxis=0;
|
---|
| 1008 | fits_read_key(fileptr,TINT,"NAXIS",&naxis,NULL,&status);
|
---|
| 1009 | // number of mandatory keywords
|
---|
| 1010 | num = naxis+3;
|
---|
| 1011 | }
|
---|
| 1012 | // extensions
|
---|
| 1013 | else
|
---|
| 1014 | {
|
---|
| 1015 | if (hdutype == IMAGE_HDU)
|
---|
| 1016 | {
|
---|
| 1017 | // read NAXIS
|
---|
| 1018 | int naxis=0;
|
---|
| 1019 | fits_read_key(fileptr,TINT,"NAXIS",&naxis,NULL,&status);
|
---|
| 1020 | // number of mandatory keywords
|
---|
| 1021 | num = naxis+5;
|
---|
| 1022 | }
|
---|
| 1023 | else
|
---|
| 1024 | if(hdutype == ASCII_TBL || hdutype == BINARY_TBL)
|
---|
| 1025 | {
|
---|
| 1026 | // number of mandatory keywords
|
---|
| 1027 | num = 8;
|
---|
| 1028 | }
|
---|
| 1029 | }
|
---|
[1136] | 1030 | int j;
|
---|
| 1031 | for(j = num+1; j <= nkeys; j++)
|
---|
| 1032 | {
|
---|
| 1033 | fits_read_keyn(fileptr,j,card,strval,NULL,&status);
|
---|
| 1034 | if(status) printerror(status);
|
---|
| 1035 |
|
---|
| 1036 | strncpy(keyname,card,LEN_KEYWORD-1);
|
---|
| 1037 | if(strncmp(keyname,comkey,LEN_KEYWORD-1) != 0 && strlen(keyname) != 0
|
---|
| 1038 | && strlen(strval) != 0)
|
---|
| 1039 | {
|
---|
| 1040 | fits_get_keytype(strval,&dtype,&status);
|
---|
| 1041 | if(status) printerror(status);
|
---|
| 1042 |
|
---|
| 1043 | strip(keyname, 'B',' ');
|
---|
| 1044 | strip(strval, 'B',' ');
|
---|
| 1045 | strip(strval, 'B','\'');
|
---|
| 1046 |
|
---|
| 1047 | switch( dtype )
|
---|
| 1048 | {
|
---|
| 1049 | case 'C':
|
---|
[1143] | 1050 | fits_read_key(fileptr,TSTRING,keyname,strval,comment,&status);
|
---|
| 1051 | dvl[keyname]= strval;
|
---|
| 1052 | dvl.SetComment(keyname, comment);
|
---|
[1136] | 1053 | break;
|
---|
| 1054 | case 'I':
|
---|
| 1055 | int ival;
|
---|
[1143] | 1056 | fits_read_key(fileptr,TINT,keyname,&ival,comment,&status);
|
---|
[1136] | 1057 | dvl[keyname]= (int_4) ival; // Portage mac DY
|
---|
[1143] | 1058 | dvl.SetComment(keyname, comment);
|
---|
[1136] | 1059 | break;
|
---|
| 1060 | case 'L':
|
---|
| 1061 | int ilog;
|
---|
[1143] | 1062 | fits_read_key(fileptr,TLOGICAL,keyname,&ilog,comment,&status);
|
---|
[1136] | 1063 | dvl[keyname]= (int_4) ilog;
|
---|
[1143] | 1064 | dvl.SetComment(keyname, comment);
|
---|
[1136] | 1065 | break;
|
---|
| 1066 | case 'F':
|
---|
| 1067 | double dval;
|
---|
[1143] | 1068 | fits_read_key(fileptr,TDOUBLE,keyname,&dval,comment,&status);
|
---|
[1136] | 1069 | dvl[keyname]= dval;
|
---|
[1143] | 1070 | dvl.SetComment(keyname, comment);
|
---|
[1136] | 1071 | break;
|
---|
| 1072 | }
|
---|
| 1073 |
|
---|
| 1074 | }
|
---|
[839] | 1075 | }
|
---|
[1136] | 1076 | // dvl_.Print();
|
---|
| 1077 | }
|
---|
| 1078 |
|
---|
[1218] | 1079 |
|
---|
| 1080 | /*!
|
---|
| 1081 | \class SOPHYA::FitsOutFile
|
---|
| 1082 | Class for loading SOPHYA objects from FITS Format Files (uses cfitsio lib)
|
---|
| 1083 | */
|
---|
| 1084 |
|
---|
[1136] | 1085 | FitsOutFile::FitsOutFile()
|
---|
| 1086 | {
|
---|
[1193] | 1087 | InitNull();
|
---|
[903] | 1088 | }
|
---|
[839] | 1089 |
|
---|
[1218] | 1090 | /*! \fn SOPHYA::FitsOutFile::FitsOutFile(char flnm[], WriteMode wrm)
|
---|
| 1091 |
|
---|
| 1092 | \param <WriteMode> enum , WriteMode = clear -> if alreadyy exists, the file will be overwritten (else created) ; WriteMode = append -> further objects will be appended to the file if it exists (else : file created). WriteMode = unknown -> file created if does not exist, else : exception. (the last situation is the default)
|
---|
| 1093 |
|
---|
| 1094 | */
|
---|
[1193] | 1095 | FitsOutFile::FitsOutFile(char flnm[], WriteMode wrm)
|
---|
[1136] | 1096 | {
|
---|
[839] | 1097 |
|
---|
[1136] | 1098 | InitNull();
|
---|
| 1099 | int status = 0;
|
---|
[839] | 1100 |
|
---|
[1136] | 1101 | // create new FITS file
|
---|
[1183] | 1102 |
|
---|
| 1103 | fits_create_file(&fptr_,flnm,&status);
|
---|
| 1104 | if( status )
|
---|
[1136] | 1105 | {
|
---|
[1193] | 1106 |
|
---|
| 1107 | switch (wrm)
|
---|
| 1108 | {
|
---|
[1183] | 1109 | // si on veut ecrire a la fin de ce fichier
|
---|
[1193] | 1110 | case append :
|
---|
[1183] | 1111 | status = 0;
|
---|
| 1112 | fits_open_file(&fptr_,flnm,READWRITE,&status);
|
---|
| 1113 | if( status )
|
---|
| 1114 | {
|
---|
| 1115 | cout << " error opening file: " << flnm << endl;
|
---|
| 1116 | printerror(status, "failure opening a file supposed to exist");
|
---|
| 1117 | }
|
---|
| 1118 | else cout << " file " << flnm << " opened, new objects will be appended " << endl;
|
---|
| 1119 | fits_get_num_hdus(fptr_, &hdunum_, &status);
|
---|
| 1120 | int hdutype;
|
---|
| 1121 | fits_movabs_hdu(fptr_,hdunum_,&hdutype,&status);
|
---|
| 1122 | if( status ) printerror( status,":FitsFile::WriteF : erreur movabs");
|
---|
[1193] | 1123 | break;
|
---|
| 1124 |
|
---|
| 1125 | case clear :
|
---|
[1183] | 1126 | {
|
---|
| 1127 | status = 0;
|
---|
| 1128 | char* newname = new char[strlen(flnm)+1];
|
---|
| 1129 | //
|
---|
| 1130 | newname[0] = '!';
|
---|
| 1131 | newname[1] = '\0';
|
---|
| 1132 | strcat(newname, flnm);
|
---|
| 1133 | fits_create_file(&fptr_,newname,&status);
|
---|
[1193] | 1134 | delete [] newname;
|
---|
[1183] | 1135 | if (status)
|
---|
| 1136 | {
|
---|
| 1137 | cout << " error opening file: " << flnm << endl;
|
---|
| 1138 | printerror(status, "unable to open file, supposed to exist");
|
---|
| 1139 | }
|
---|
[1193] | 1140 | else cout << " WARNING : file " << flnm << " is overwritten " << endl;
|
---|
| 1141 | break;
|
---|
[1183] | 1142 | }
|
---|
[1193] | 1143 | case unknown :
|
---|
| 1144 | printerror(status, " file seems already to exist");
|
---|
| 1145 | break;
|
---|
[1183] | 1146 |
|
---|
[1193] | 1147 | }
|
---|
[1136] | 1148 | }
|
---|
| 1149 | }
|
---|
| 1150 |
|
---|
| 1151 |
|
---|
| 1152 |
|
---|
[1218] | 1153 | /*! \fn void SOPHYA::FitsOutFile::makeHeaderImageOnFits(char type, int nbdim, int* naxisn, DVList &dvl)
|
---|
| 1154 |
|
---|
| 1155 | create an IMAGE header on FITS file.
|
---|
| 1156 | \param <type> type of data (see method ColTypeFromFits)
|
---|
| 1157 | \param <nbdim> number of dimensions : 1D, 2D, 3D etc. = NAXIS
|
---|
| 1158 | \param <naxisn> array containind sizes of the different dimensions
|
---|
| 1159 | */
|
---|
[1143] | 1160 | void FitsOutFile::makeHeaderImageOnFits(char type, int nbdim, int* naxisn, DVList &dvl)
|
---|
[1136] | 1161 | {
|
---|
| 1162 | int status = 0;
|
---|
| 1163 | long naxis = nbdim;
|
---|
| 1164 | long* naxes = new long[nbdim];
|
---|
| 1165 | if (hdunum_ == 1)
|
---|
| 1166 | {
|
---|
[1143] | 1167 | if (imageOnPrimary_ == false)
|
---|
| 1168 | {
|
---|
| 1169 | fits_create_img(fptr_,FLOAT_IMG,0,naxes,&status);
|
---|
| 1170 | writeSignatureOnFits(); }
|
---|
[1136] | 1171 | else hdunum_--;
|
---|
| 1172 | }
|
---|
| 1173 | int k;
|
---|
| 1174 | for (k=0; k< nbdim; k++) naxes[k] = (long)naxisn[k];
|
---|
| 1175 | if (type == 'D')
|
---|
| 1176 | fits_create_img(fptr_,DOUBLE_IMG,naxis,naxes,&status);
|
---|
| 1177 | else
|
---|
| 1178 | if (type == 'E')
|
---|
| 1179 | fits_create_img(fptr_,FLOAT_IMG,naxis,naxes,&status);
|
---|
| 1180 | else
|
---|
| 1181 | if (type == 'I')
|
---|
| 1182 | fits_create_img(fptr_,LONG_IMG,naxis,naxes,&status);
|
---|
| 1183 | else
|
---|
| 1184 | {
|
---|
| 1185 | cout << " type of data: " << type << endl;
|
---|
| 1186 | throw PException("FitsFile:::makeHeaderImageOnFits:unprogrammed type of data ");
|
---|
| 1187 | }
|
---|
| 1188 |
|
---|
| 1189 | hdunum_++;
|
---|
[1143] | 1190 |
|
---|
| 1191 | // write supplementary keywords
|
---|
| 1192 | // dvl.Print();
|
---|
| 1193 | addKeywordsOfDVList(dvl);
|
---|
| 1194 |
|
---|
[1136] | 1195 | delete [] naxes;
|
---|
| 1196 | if( status ) printerror( status, "erreur creation HDU IMAGE" );
|
---|
| 1197 |
|
---|
| 1198 | }
|
---|
[1218] | 1199 |
|
---|
| 1200 |
|
---|
| 1201 | /*! \fn void SOPHYA::FitsOutFile::PutImageToFits(int nbData, double* map) const
|
---|
| 1202 |
|
---|
| 1203 | write double data from array 'map'on an IMAGE extension
|
---|
| 1204 | \param <nbData> number of data to be written
|
---|
| 1205 | */
|
---|
[1209] | 1206 | void FitsOutFile::PutImageToFits(int nbData, double* map) const
|
---|
[1136] | 1207 | {
|
---|
| 1208 | int status = 0;
|
---|
| 1209 | long npix= nbData;
|
---|
| 1210 | fits_write_img(fptr_,TDOUBLE,1,npix,map,&status);
|
---|
[1209] | 1211 | if( status ) printerror( status, "erreur ecriture PutImageToFits" );
|
---|
[1143] | 1212 | // writeSignatureOnFits();
|
---|
[1136] | 1213 | }
|
---|
| 1214 |
|
---|
[1218] | 1215 | /*! \fn void SOPHYA::FitsOutFile::PutImageToFits(int nbData, float* map) const
|
---|
| 1216 |
|
---|
| 1217 | same as previous method with float data
|
---|
| 1218 | */
|
---|
[1209] | 1219 | void FitsOutFile::PutImageToFits(int nbData, float* map) const
|
---|
[1136] | 1220 | {
|
---|
| 1221 | int status = 0;
|
---|
| 1222 | long npix= nbData;
|
---|
| 1223 | fits_write_img(fptr_,TFLOAT,1,npix, map,&status);
|
---|
[1209] | 1224 | if( status ) printerror( status, "erreur ecriture PutImageToFits" );
|
---|
[1143] | 1225 | // writeSignatureOnFits();
|
---|
[1136] | 1226 |
|
---|
| 1227 | }
|
---|
[1218] | 1228 |
|
---|
| 1229 | /*! \fn void SOPHYA::FitsOutFile::PutImageToFits( int nbData, int* map) const
|
---|
| 1230 |
|
---|
| 1231 | same as previous method with int data */
|
---|
[1209] | 1232 | void FitsOutFile::PutImageToFits( int nbData, int* map) const
|
---|
[1136] | 1233 | {
|
---|
| 1234 | int status = 0;
|
---|
| 1235 |
|
---|
| 1236 | long npix= nbData;
|
---|
| 1237 | fits_write_img(fptr_,TINT,1,npix,map,&status);
|
---|
[1209] | 1238 | if( status ) printerror( status, "erreur ecriture PutImageToFits" );
|
---|
[1143] | 1239 | // writeSignatureOnFits();
|
---|
[1136] | 1240 | }
|
---|
| 1241 |
|
---|
| 1242 |
|
---|
| 1243 |
|
---|
[1218] | 1244 | /*! \fn void SOPHYA::FitsOutFile::makeHeaderBntblOnFits( string fieldType, vector<string> Noms, int nentries, int tfields, DVList &dvl, string extname, vector<int> taille_des_chaines)
|
---|
| 1245 |
|
---|
| 1246 | create an BINTABLE header on FITS file.
|
---|
| 1247 | \param <fieldType> array conta
|
---|
| 1248 | ining characters denoting types of the different column (see method ColTypeFromFits)
|
---|
| 1249 | \param <Noms> array of the names of columns
|
---|
| 1250 | \param <nentries> number of data of each column
|
---|
| 1251 | \param <tfields> number of columns
|
---|
| 1252 | \param <dvl> a SOPHYA DVList containing keywords to be appended
|
---|
| 1253 | \param <extname> keyword EXTNAME for FITS file
|
---|
| 1254 | \param <taille_des_chaines> vector containing the number of characters of data for each char* typed column, with order of appearance in 'fieldType'
|
---|
| 1255 | */
|
---|
[1193] | 1256 | void FitsOutFile::makeHeaderBntblOnFits( string fieldType, vector<string> Noms, int nentries, int tfields, DVList &dvl, string extname, vector<int> taille_des_chaines)
|
---|
[839] | 1257 | {
|
---|
[1209] | 1258 | int k;
|
---|
[839] | 1259 | int status = 0;
|
---|
| 1260 | long nrows;
|
---|
[1209] | 1261 | // verifications de coherence
|
---|
| 1262 |
|
---|
[1193] | 1263 | if (fieldType.length() != tfields)
|
---|
[839] | 1264 | {
|
---|
[1193] | 1265 | cout << " nombre de champs :" << tfields << "nombre de types: " << fieldType.length() << endl;
|
---|
[1136] | 1266 | throw ParmError("FitsFile:: fields and types don't match");
|
---|
[839] | 1267 |
|
---|
| 1268 | }
|
---|
[1209] | 1269 | if (tfields > Noms.size())
|
---|
| 1270 | {
|
---|
| 1271 | cout << " WARNING: FitsOutFile::makeHeaderBntblOnFits, length of vector of column names not equal to total number of columns" << endl;
|
---|
| 1272 | for (k=0; k<(tfields-Noms.size()); k++) Noms.push_back( string(" "));
|
---|
| 1273 | }
|
---|
| 1274 |
|
---|
| 1275 | // nombre de variables "chaines de caracteres"
|
---|
| 1276 | int nbString = 0;
|
---|
| 1277 | for (k=0; k<tfields;k++) if (fieldType[k] == 'A') nbString++;
|
---|
| 1278 | // coherence de la longueur du vecteur des tailles
|
---|
| 1279 | if (nbString > taille_des_chaines.size())
|
---|
| 1280 | {
|
---|
| 1281 | cout << " WARNING: FitsOutFile::makeHeaderBntblOnFits, length of vector of string lengths not equal to total number of columns" << endl;
|
---|
| 1282 | int strSz=0;
|
---|
| 1283 | for (k=0; k<taille_des_chaines.size(); k++) if ( taille_des_chaines[k] > strSz) strSz = taille_des_chaines[k];
|
---|
| 1284 | for (k=0; k<(nbString-taille_des_chaines.size()); k++) taille_des_chaines.push_back(strSz);
|
---|
| 1285 | }
|
---|
[839] | 1286 | char ** ttype= new char*[tfields];
|
---|
| 1287 | char ** tform= new char*[tfields];
|
---|
| 1288 | char largeur[FLEN_VALUE];
|
---|
| 1289 | int noColString=0;
|
---|
[971] | 1290 | for (k=0; k<tfields;k++)
|
---|
[839] | 1291 | {
|
---|
| 1292 | char format[FLEN_VALUE];
|
---|
| 1293 |
|
---|
| 1294 | if(nentries < 1024)
|
---|
| 1295 | {
|
---|
| 1296 | nrows= nentries;
|
---|
| 1297 | if (fieldType[k] == 'A')
|
---|
| 1298 | {
|
---|
| 1299 | sprintf(largeur,"%d",taille_des_chaines[noColString++]);
|
---|
| 1300 | strcpy(format,largeur);
|
---|
| 1301 | }
|
---|
| 1302 | else strcpy(format,"1");
|
---|
| 1303 | }
|
---|
| 1304 | else
|
---|
| 1305 | {
|
---|
| 1306 | nrows = nentries/1024;
|
---|
| 1307 | if(nentries%1024 != 0) nrows++;
|
---|
| 1308 | if (fieldType[k] == 'A')
|
---|
| 1309 | {
|
---|
[1136] | 1310 | char largaux[FLEN_VALUE];
|
---|
| 1311 | sprintf(largeur,"%d",taille_des_chaines[noColString]);
|
---|
| 1312 | sprintf(largaux,"%d",1024*taille_des_chaines[noColString]);
|
---|
| 1313 | noColString++;
|
---|
| 1314 | strcpy(format, largaux);
|
---|
[839] | 1315 | }
|
---|
| 1316 | else strcpy(format,"1024");
|
---|
| 1317 | }
|
---|
| 1318 | strncat(format,&fieldType[k],1);
|
---|
| 1319 | if (fieldType[k] == 'A')
|
---|
| 1320 | {
|
---|
| 1321 | strcat(format,largeur);
|
---|
| 1322 | }
|
---|
[1193] | 1323 | ttype[k] = const_cast<char*>(Noms[k].c_str());
|
---|
[839] | 1324 | tform[k]= new char[FLEN_VALUE];
|
---|
| 1325 | strcpy(tform[k],format);
|
---|
| 1326 | }
|
---|
[1193] | 1327 | char* extn = const_cast<char*>(extname.c_str());
|
---|
[839] | 1328 |
|
---|
| 1329 | // create a new empty binary table onto the FITS file
|
---|
| 1330 | // physical units if they exist, are defined in the DVList object
|
---|
| 1331 | // so the NULL pointer is given for the tunit parameters.
|
---|
| 1332 | nrows=0;
|
---|
| 1333 | fits_create_tbl(fptr_,BINARY_TBL,nrows,tfields,ttype,tform,
|
---|
| 1334 | NULL,extn,&status);
|
---|
| 1335 | if( status ) printerror( status );
|
---|
[1026] | 1336 | if ( hdunum_ == 0 ) hdunum_ = 2;
|
---|
| 1337 | else hdunum_++;
|
---|
[971] | 1338 | int ii;
|
---|
| 1339 | for(ii = 0; ii < tfields; ii++)
|
---|
[839] | 1340 | {
|
---|
| 1341 | delete [] tform[ii];
|
---|
| 1342 | }
|
---|
| 1343 | delete [] ttype;
|
---|
| 1344 | delete [] tform;
|
---|
| 1345 | //
|
---|
| 1346 | // write supplementary keywords
|
---|
[1143] | 1347 | addKeywordsOfDVList(dvl);
|
---|
[839] | 1348 | }
|
---|
| 1349 |
|
---|
[1218] | 1350 | /*! \fn void SOPHYA::FitsOutFile::PutColToFits(int nocol, int nentries, double* donnees) const
|
---|
| 1351 |
|
---|
| 1352 | write double data from array 'donnees ' on column number 'nocol' of a BINTABLE extension.
|
---|
| 1353 | \param <nentries> number of data to be written
|
---|
| 1354 | */
|
---|
[1209] | 1355 | void FitsOutFile::PutColToFits(int nocol, int nentries, double* donnees) const
|
---|
[839] | 1356 | {
|
---|
| 1357 | int status = 0;
|
---|
[971] | 1358 | int hdutype;
|
---|
[839] | 1359 | fits_movabs_hdu(fptr_,hdunum_,&hdutype,&status);
|
---|
[1209] | 1360 | if( status ) printerror(status,"PutColToFits: le movabs a foire");
|
---|
[839] | 1361 | fits_get_hdu_type(fptr_, &hdutype, &status);
|
---|
[867] | 1362 | if(hdutype != ASCII_TBL && hdutype != BINARY_TBL)
|
---|
| 1363 | {
|
---|
| 1364 | cout << " hdunum= " << hdunum_ << " hdutype= " << hdutype << endl;
|
---|
[1209] | 1365 | throw IOExc("FitsFile::PutColToFits, this HDU is not an ASCII table nor a binary table");
|
---|
[867] | 1366 | }
|
---|
[839] | 1367 | int code;
|
---|
| 1368 | long repeat, width;
|
---|
| 1369 | fits_get_coltype(fptr_, nocol+1, &code, &repeat,&width, &status);
|
---|
| 1370 | if( code != TDOUBLE)
|
---|
| 1371 | {
|
---|
[1209] | 1372 | cout << " WARNING : types don't match (PutColToFits) : on fits file= " << code << " to be written= DOUBLE " << endl;
|
---|
[839] | 1373 | }
|
---|
| 1374 | fits_write_col(fptr_,TDOUBLE,nocol+1,1,1,nentries, donnees ,&status);
|
---|
| 1375 | if( status ) printerror( status,"erreur ecriture du fichier fits" );
|
---|
| 1376 | }
|
---|
[1218] | 1377 |
|
---|
| 1378 |
|
---|
| 1379 |
|
---|
| 1380 | /*! \fn void SOPHYA::FitsOutFile::PutColToFits(int nocol, int nentries, float* donnees) const
|
---|
| 1381 |
|
---|
| 1382 | same as previous method with float data
|
---|
| 1383 | */
|
---|
[1209] | 1384 | void FitsOutFile::PutColToFits(int nocol, int nentries, float* donnees) const
|
---|
[839] | 1385 | {
|
---|
| 1386 | int status = 0;
|
---|
| 1387 | int hdutype;
|
---|
| 1388 | fits_movabs_hdu(fptr_,hdunum_,&hdutype,&status);
|
---|
[1209] | 1389 | if( status ) printerror(status,"PutColToFits: le movabs a foire");
|
---|
[839] | 1390 | fits_get_hdu_type(fptr_, &hdutype, &status);
|
---|
| 1391 | if(hdutype != ASCII_TBL && hdutype != BINARY_TBL)
|
---|
| 1392 | {
|
---|
| 1393 | cout << " hdunum= " << hdunum_ << " hdutype= " << hdutype << endl;
|
---|
[1209] | 1394 | throw IOExc("FitsFile::PutColToFits, this HDU is not an ASCII table nor a binary table");
|
---|
[839] | 1395 | }
|
---|
| 1396 | if(hdutype == ASCII_TBL && nocol>0)
|
---|
| 1397 | {
|
---|
[1209] | 1398 | throw IOExc("FitsFile::PutColToFits, this HDU is an ASCII table, nocol>0 forbidden");
|
---|
[839] | 1399 | }
|
---|
| 1400 | int code;
|
---|
| 1401 | long repeat, width;
|
---|
| 1402 | fits_get_coltype(fptr_, nocol+1, &code, &repeat,&width, &status);
|
---|
| 1403 | if( code != TFLOAT)
|
---|
| 1404 | {
|
---|
[1209] | 1405 | cout << " WARNING : types don't match (PutColToFits) : on fits file= " << code << " (FITS code), to be written= FLOAT " << endl;
|
---|
[839] | 1406 | }
|
---|
| 1407 | fits_write_col(fptr_,TFLOAT,nocol+1,1,1,nentries, donnees ,&status);
|
---|
| 1408 | if( status ) printerror( status,"erreur ecriture du fichier fits" );
|
---|
| 1409 | }
|
---|
[1218] | 1410 |
|
---|
| 1411 |
|
---|
| 1412 | /*! \fn void FitsOutFile::PutColToFits(int nocol, int nentries, int* donnees) const
|
---|
| 1413 |
|
---|
| 1414 | same as previous method with int data
|
---|
| 1415 | */
|
---|
[1209] | 1416 | void FitsOutFile::PutColToFits(int nocol, int nentries, int* donnees) const
|
---|
[839] | 1417 | {
|
---|
| 1418 | int status = 0;
|
---|
| 1419 | int hdutype;
|
---|
| 1420 | fits_movabs_hdu(fptr_,hdunum_,&hdutype,&status);
|
---|
[1209] | 1421 | if( status ) printerror(status,"PutColToFits: le movabs a foire");
|
---|
[839] | 1422 | fits_get_hdu_type(fptr_, &hdutype, &status);
|
---|
| 1423 | if(hdutype != ASCII_TBL && hdutype != BINARY_TBL)
|
---|
| 1424 | {
|
---|
| 1425 | cout << " hdunum= " << hdunum_ << " hdutype= " << hdutype << endl;
|
---|
[1209] | 1426 | throw IOExc("FitsFile::PutColToFits, this HDU is not an ASCII table nor a binary table");
|
---|
[839] | 1427 | }
|
---|
| 1428 | if(hdutype == ASCII_TBL && nocol>0)
|
---|
| 1429 | {
|
---|
[1209] | 1430 | throw IOExc("FitsFile::PutColToFits, this HDU is an ASCII table, nocol>0 forbidden");
|
---|
[839] | 1431 | }
|
---|
| 1432 | int code;
|
---|
| 1433 | long repeat, width;
|
---|
| 1434 | fits_get_coltype(fptr_, nocol+1, &code, &repeat,&width, &status);
|
---|
| 1435 | if( code != TLONG && code != TINT && code != TSHORT )
|
---|
| 1436 | {
|
---|
[1209] | 1437 | cout << " WARNING : types don't match (PutColToFits) : on fits file= " << code << " (FITS code), to be written= INT " << endl;
|
---|
[839] | 1438 | }
|
---|
| 1439 | fits_write_col(fptr_,TINT,nocol+1,1,1,nentries, donnees ,&status);
|
---|
[971] | 1440 | if( status ) printerror( status," ecriture du fichier fits" );
|
---|
[839] | 1441 | }
|
---|
[1218] | 1442 |
|
---|
| 1443 |
|
---|
| 1444 | /*! \fn void SOPHYA::FitsOutFile::PutColToFits(int nocol, int nentries, char** donnees) const
|
---|
| 1445 | same as previous method with char* data
|
---|
| 1446 | */
|
---|
[1209] | 1447 | void FitsOutFile::PutColToFits(int nocol, int nentries, char** donnees) const
|
---|
[839] | 1448 | {
|
---|
| 1449 | int status = 0;
|
---|
| 1450 | int hdutype;
|
---|
| 1451 | fits_movabs_hdu(fptr_,hdunum_,&hdutype,&status);
|
---|
[1209] | 1452 | if( status ) printerror(status,"PutColToFits: le movabs a foire");
|
---|
[839] | 1453 | fits_get_hdu_type(fptr_, &hdutype, &status);
|
---|
| 1454 | if(hdutype != ASCII_TBL && hdutype != BINARY_TBL)
|
---|
| 1455 | {
|
---|
| 1456 | cout << " hdunum= " << hdunum_ << " hdutype= " << hdutype << endl;
|
---|
[1209] | 1457 | throw IOExc("FitsFile::PutColToFits, this HDU is not an ASCII table nor a binary table");
|
---|
[839] | 1458 | }
|
---|
| 1459 | if(hdutype == ASCII_TBL && nocol>0)
|
---|
| 1460 | {
|
---|
[1209] | 1461 | throw IOExc("FitsFile::PutColToFits, this HDU is an ASCII table, nocol>0 forbidden");
|
---|
[839] | 1462 | }
|
---|
| 1463 | int code;
|
---|
| 1464 | long repeat, width;
|
---|
| 1465 | fits_get_coltype(fptr_, nocol+1, &code, &repeat,&width, &status);
|
---|
| 1466 | if( code != TSTRING)
|
---|
| 1467 | {
|
---|
[1209] | 1468 | cout << " WARNING : types don't match (PutColToFits) : on fits file= " << code << " (FITS code), to be written= char** " << endl;
|
---|
[839] | 1469 | }
|
---|
| 1470 | fits_write_col(fptr_,TSTRING,nocol+1,1,1,nentries, donnees ,&status);
|
---|
| 1471 | if( status ) printerror( status,"erreur ecriture du fichier fits" );
|
---|
| 1472 | }
|
---|
| 1473 |
|
---|
[1209] | 1474 | void FitsOutFile::PutBinTabLine(long NoLine, BnTblLine& ligne) const
|
---|
[1193] | 1475 | {
|
---|
[1209] | 1476 | // on ne fait pas de verification de type, ni de dimension ici, pour
|
---|
| 1477 | // des raisons de performances
|
---|
| 1478 | int k;
|
---|
[1193] | 1479 | int status= 0;
|
---|
| 1480 | int anull;
|
---|
[1209] | 1481 | int ncol=0;
|
---|
[1193] | 1482 | long nels=1;
|
---|
[1209] | 1483 | // int nbcols;
|
---|
| 1484 | // fits_get_num_cols(fptr_, &nbcols,&status);
|
---|
| 1485 | for (k=0; k<ligne.ddata_.size(); k++, ncol++)
|
---|
[1193] | 1486 | {
|
---|
[1209] | 1487 | fits_write_col(fptr_,TDOUBLE,ncol+1,NoLine+1,1,1, &ligne.ddata_[k] ,&status);
|
---|
| 1488 | if( status ) printerror( status, "PutBinTabLine : erreur ecriture double" );
|
---|
[1193] | 1489 | }
|
---|
[1209] | 1490 | for (k=0; k<ligne.fdata_.size(); k++, ncol++)
|
---|
| 1491 | {
|
---|
| 1492 | fits_write_col(fptr_,TFLOAT,ncol+1,NoLine+1,1,1, &ligne.fdata_[k] ,&status);
|
---|
| 1493 | if( status ) printerror( status, "PutBinTabLine : erreur ecriture float" );
|
---|
| 1494 | }
|
---|
| 1495 | for (k=0; k<ligne.idata_.size(); k++, ncol++)
|
---|
| 1496 | {
|
---|
| 1497 | fits_write_col(fptr_,TINT,ncol+1,NoLine+1,1,1, &ligne.idata_[k] ,&status);
|
---|
| 1498 | if( status ) printerror( status, "PutBinTabLine : erreur ecriture entier" );
|
---|
| 1499 | }
|
---|
| 1500 |
|
---|
| 1501 | for (k=0; k<ligne.cdata_.size(); k++, ncol++)
|
---|
| 1502 | {
|
---|
[1220] | 1503 | fits_write_col(fptr_,TSTRING,ncol+1,NoLine+1,1,1, (void*)ligne.cdata_[k].c_str() ,&status);
|
---|
[1209] | 1504 | if( status ) printerror( status, "PutBinTabLine : erreur ecriture caracteres" );
|
---|
| 1505 | }
|
---|
[1193] | 1506 | }
|
---|
| 1507 |
|
---|
| 1508 |
|
---|
[1218] | 1509 | /* \fn void SOPHYA::FitsOutFile::DVListIntoPrimaryHeader(DVList& dvl) const
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| 1510 |
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| 1511 | Put keywords from a DVList into the primary header of the fits-file
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| 1512 | */
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[1143] | 1513 | void FitsOutFile::DVListIntoPrimaryHeader(DVList& dvl) const
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| 1514 | {
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| 1515 | int status = 0;
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| 1516 | int hdutype;
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| 1517 | fits_movabs_hdu(fptr_,1,&hdutype,&status);
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| 1518 | addKeywordsOfDVList(dvl);
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| 1519 | fits_movabs_hdu(fptr_,hdunum_,&hdutype,&status);
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| 1520 | }
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[839] | 1521 |
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[1143] | 1522 |
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[1136] | 1523 | void FitsOutFile::writeSignatureOnFits() const
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[839] | 1524 | {
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| 1525 | int status = 0;
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| 1526 | char keyname[LEN_KEYWORD];
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| 1527 | char strval[FLEN_VALUE];
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| 1528 | char comment[FLEN_COMMENT];
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[971] | 1529 | strncpy(keyname, "CREATOR", LEN_KEYWORD);
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| 1530 | keyname[LEN_KEYWORD-1] = '\0';
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| 1531 | strcpy(strval, "SOPHYA");
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| 1532 | strcpy(comment," SOPHYA Package - FITSIOServer ");
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| 1533 | fits_write_key(fptr_, TSTRING, keyname, &strval, comment, &status);
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| 1534 | if( status ) printerror( status );
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[1143] | 1535 | fits_write_date(fptr_, &status);
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[971] | 1536 | fits_write_comment(fptr_,"..............................................", &status);
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| 1537 | fits_write_comment(fptr_, " SOPHYA package - FITSIOSever ", &status);
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| 1538 | fits_write_comment(fptr_, " (C) LAL/IN2P3-CNRS Orsay, FRANCE 2000", &status);
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| 1539 | fits_write_comment(fptr_, " (C) DAPNIA/CEA Saclay, FRANCE 2000", &status);
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| 1540 | fits_write_comment(fptr_,"..............................................", &status);
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[1045] | 1541 | if( status ) printerror( status, "erreur writeSignatureOnFits" );
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[839] | 1542 | }
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| 1543 |
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[903] | 1544 |
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[1143] | 1545 | void FitsOutFile::addKeywordsOfDVList(DVList& dvl) const
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| 1546 | {
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| 1547 | int status = 0;
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| 1548 | fits_write_comment(fptr_,"---------- keywords from SOPHYA ---------", &status);
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| 1549 | if (hdunum_ == 1) writeSignatureOnFits();
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| 1550 | DVList::ValList::const_iterator it;
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| 1551 | for(it = dvl.Begin(); it != dvl.End(); it++)
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| 1552 | {
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| 1553 | char keytype= (*it).second.elval.typ;
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| 1554 | char keyname[10];
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| 1555 | strncpy(keyname,(*it).first.substr(0,64).c_str(),10);
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[1183] | 1556 | string key(keyname);
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[1143] | 1557 | char comment[FLEN_COMMENT];
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| 1558 | char strval[FLEN_VALUE]= "";
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| 1559 | char *comkey = "COMMENT";
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| 1560 | fits_read_keyword(fptr_, keyname, strval, NULL, &status);
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| 1561 | if (status != 0 || strncmp(keyname,comkey,LEN_KEYWORD-1) == 0 )
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| 1562 | {
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[1183] | 1563 | string coco = dvl.GetComment(key);
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| 1564 | coco.copy( comment, FLEN_COMMENT-1);
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| 1565 | int bout = (coco.length() < FLEN_COMMENT) ? coco.length() : FLEN_COMMENT-1;
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| 1566 | comment[bout]= '\0';
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[1143] | 1567 | status = 0;
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| 1568 | switch (keytype)
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| 1569 | {
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| 1570 | case 'I' :
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| 1571 | {
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[1183] | 1572 | int ival = (int)dvl.GetI(key);
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| 1573 | fits_write_key(fptr_,TINT,keyname,&ival, comment,&status);
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[1143] | 1574 | break;
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| 1575 | }
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| 1576 | case 'D' :
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| 1577 | {
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[1183] | 1578 | double dval= (double)dvl.GetD(key);
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[1143] | 1579 | fits_write_key(fptr_,TDOUBLE,keyname,&dval,comment,&status);
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| 1580 | break;
|
---|
| 1581 | }
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| 1582 | case 'S' :
|
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| 1583 | {
|
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[1183] | 1584 | char strvaleur[FLEN_VALUE]= "";
|
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| 1585 | string valChaine = dvl.GetS(key);
|
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| 1586 | valChaine.copy(strvaleur, FLEN_VALUE-1);
|
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| 1587 | int fin = (valChaine.length() < FLEN_VALUE) ? valChaine.length() : FLEN_VALUE-1;
|
---|
| 1588 | strvaleur[fin]= '\0';
|
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| 1589 |
|
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| 1590 | fits_write_key(fptr_,TSTRING,keyname,&strvaleur,comment,&status);
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[1143] | 1591 | break;
|
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| 1592 | }
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| 1593 | }
|
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| 1594 | }
|
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| 1595 | if( status ) printerror( status,"fitsfile: probleme ecriture mot-cle du dvlist" );
|
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| 1596 | }
|
---|
| 1597 | fits_write_comment(fptr_,"--------------------------------------", &status);
|
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| 1598 | }
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[903] | 1599 |
|
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| 1600 |
|
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[839] | 1601 |
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