[949] | 1 | #include "machdefs.h"
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| 2 | #include <stdlib.h>
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[839] | 3 | #include "fitsfile.h"
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| 4 | #include "pexceptions.h"
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| 5 | #include "strutil.h"
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[903] | 6 | #include "anydataobj.h"
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| 7 | #include "fitsspherehealpix.h"
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[839] | 8 | FitsFile::FitsFile()
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| 9 | {
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| 10 | fptr_= NULL;
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| 11 | hdutype_= 0;
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| 12 | hdunum_ = 0;
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| 13 |
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| 14 | nrows_ = 0;
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| 15 | }
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| 16 |
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| 17 |
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| 18 | FitsFile::~FitsFile()
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| 19 | {
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| 20 | int status = 0;
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[903] | 21 | if( fptr_ != NULL)
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| 22 | {
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| 23 | fits_close_file(fptr_,&status);
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| 24 | delete fptr_;
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| 25 | }
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[839] | 26 | if( status ) printerror( status );
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| 27 | }
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[903] | 28 |
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| 29 |
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| 30 | int FitsFile::NbBlocks(char flnm[])
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| 31 | {
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| 32 | int status = 0;
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| 33 | int nbhdu = 0;
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| 34 | fitsfile* fileptr;
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| 35 | fits_open_file(&fileptr,flnm,READONLY,&status);
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| 36 | if( status ) printerror( status, "NbBlocks: erreur ouverture fichier" );
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| 37 | fits_get_num_hdus(fileptr, &nbhdu, &status);
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| 38 | fits_close_file(fileptr,&status);
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| 39 | return nbhdu;
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| 40 | }
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| 41 |
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| 42 | void FitsFile::getBlockType(char flnm[], int hdunum, string& typeOfExtension, int& naxis, vector<int>& naxisn, string& dataType, DVList& dvl )
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| 43 | {
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| 44 | int status = 0;
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| 45 | fitsfile* fileptr;
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| 46 | fits_open_file(&fileptr,flnm,READONLY,&status);
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| 47 | if( status ) printerror( status, "getBlockType: erreur ouverture fichier" );
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| 48 | // move to the specified HDU number
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| 49 | int hdutype = 0;
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| 50 | fits_movabs_hdu(fileptr,hdunum,&hdutype,&status);
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| 51 | if( status ) printerror( status,"getBlockType: erreur movabs");
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| 52 | if(hdutype == IMAGE_HDU)
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| 53 | {
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| 54 | typeOfExtension = "IMAGE";
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| 55 | int bitpix;
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| 56 | GetImageParameters (fileptr, bitpix, naxis, naxisn);
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| 57 | if(bitpix == DOUBLE_IMG) dataType = "double";
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| 58 | else
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| 59 | if(bitpix == FLOAT_IMG) dataType = "float";
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| 60 | else
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| 61 | if(bitpix == LONG_IMG || bitpix == SHORT_IMG ) dataType = "int";
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| 62 | else
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| 63 | {
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| 64 | cout << " bitpix= " << bitpix << endl;
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| 65 | throw PException(" FitsFile::getBlockType : unsupprted FITS data type");
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| 66 | }
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| 67 |
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| 68 | }
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| 69 | else
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| 70 | if(hdutype == ASCII_TBL || hdutype == BINARY_TBL)
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| 71 | {
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| 72 | int nrows = 0;
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| 73 | vector<string> noms;
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| 74 | vector<char> types;
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| 75 | vector<int> taille_des_chaines;
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| 76 | GetBinTabParameters(fileptr, naxis, nrows, naxisn, noms, types, taille_des_chaines);
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| 77 | for (int k=0; k< naxisn.size(); k++) naxisn[k] *= nrows;
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| 78 | if(hdutype == ASCII_TBL)
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| 79 | {
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| 80 | typeOfExtension = "ASCII_TBL";
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| 81 | dataType = "ASCII";
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| 82 | }
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| 83 | else
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| 84 | {
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| 85 | typeOfExtension = "BINARY_TBL";
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| 86 | if(types[0] == 'D') dataType = "double";
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| 87 | else
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| 88 | if(types[0] == 'E') dataType = "float";
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| 89 | else
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| 90 | if(types[0] == 'I' ) dataType = "int";
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| 91 | else
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| 92 | if(types[0] == 'S' ) dataType = "char*";
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| 93 | else
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| 94 | {
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| 95 | cout << " types[0]= " << types[0] << endl;
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| 96 | throw PException(" FitsFile::getBlockType : unsupprted FITS data type");
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| 97 | }
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| 98 | }
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| 99 | }
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| 100 | else
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| 101 | {
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| 102 | cout << " hdutype= " << hdutype << endl;
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| 103 | throw IOExc("FitsFile::getBlockType: this HDU type is unknown");
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| 104 | }
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| 105 |
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| 106 | fits_movabs_hdu(fileptr,hdunum,&hdutype,&status);
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| 107 | if( status ) printerror( status,"getBlockType: erreur movabs, pour dvlist");
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| 108 | KeywordsIntoDVList(fileptr, dvl);
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| 109 | fits_close_file(fileptr,&status);
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| 110 | }
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| 111 |
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[839] | 112 | void FitsFile::ReadF(char flnm[],int hdunum)
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| 113 | {
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| 114 | int status = 0;
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| 115 | hdutype_= 0;
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| 116 | hdunum_ = 0;
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| 117 | fits_open_file(&fptr_,flnm,READONLY,&status);
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| 118 | if( status ) printerror( status );
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| 119 |
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| 120 | // move to the specified HDU number
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| 121 | int hdutype;
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| 122 | fits_movabs_hdu(fptr_,hdunum,&hdutype,&status);
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| 123 | if( status ) printerror( status );
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| 124 |
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| 125 | hdutype_= hdutype;
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| 126 | hdunum_ = hdunum;
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| 127 | if(hdutype_ == IMAGE_HDU)
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| 128 | {
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[903] | 129 | GetImageParameters (fptr_, bitpix_, naxis_, naxisn_);
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| 130 | nbData_ = 1;
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| 131 | for (int k=0; k<naxis_; k++) if (naxisn_[k] > 0) nbData_ *= naxisn_[k];
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| 132 | fits_movabs_hdu(fptr_,hdunum,&hdutype,&status);
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| 133 | if( status ) printerror( status);
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| 134 | KeywordsIntoDVList(fptr_, dvl_);
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[839] | 135 | }
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| 136 | if(hdutype_ == ASCII_TBL || hdutype_ == BINARY_TBL)
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| 137 | {
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[903] | 138 | GetBinTabParameters(fptr_,nbcols_, nrows_,repeat_, noms_, types_, taille_des_chaines_);
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| 139 | fits_movabs_hdu(fptr_,hdunum,&hdutype,&status);
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| 140 | if( status ) printerror( status);
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| 141 | KeywordsIntoDVList(fptr_, dvl_);
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[839] | 142 | }
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| 143 | ReadFromFits(*this);
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| 144 |
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| 145 | }
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| 146 | void FitsFile::WriteF(char flnm[],int hdunum)
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| 147 | {
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| 148 | int status = 0;
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| 149 | hdutype_= 0;
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| 150 | hdunum_ = hdunum;
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| 151 | // create new FITS file
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| 152 | fits_create_file(&fptr_,flnm,&status);
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| 153 | if( status ) printerror(status,"file already exists");
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| 154 | WriteToFits(*this);
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| 155 | }
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| 156 | void FitsFile::GetSingleColumn(double* map, int nentries) const
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| 157 | {
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| 158 | int status = 0;
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| 159 | if(hdutype_ == IMAGE_HDU)
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| 160 | {
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| 161 |
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| 162 | if(bitpix_ != DOUBLE_IMG)
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| 163 | {
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| 164 | cout << " The data type on fits file is not double...";
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| 165 | cout << " Conversion to double achieved by cfitsio lib" << endl;
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| 166 | }
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| 167 |
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| 168 | // no checking for undefined pixels
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| 169 | int anull;
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| 170 | double dnull= 0.;
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| 171 |
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| 172 | long nels= nentries;
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| 173 | fits_read_img(fptr_,TDOUBLE,1,nels,&dnull,map,&anull,&status);
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| 174 | if( status ) printerror( status );
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| 175 | }
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| 176 | else
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| 177 | if(hdutype_ == ASCII_TBL || hdutype_ == BINARY_TBL)
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| 178 | {
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| 179 | GetBinTabFCol(map,nentries, 0);
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| 180 | }
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| 181 | else
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| 182 | {
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| 183 | cout << " hdutype= " << hdutype_ << endl;
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| 184 | throw IOExc("FitsFile::GetSingleColumn this HDU is unknown");
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| 185 | }
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| 186 | }
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| 187 |
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| 188 | void FitsFile::GetSingleColumn(float* map, int nentries) const
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| 189 | {
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| 190 | int status = 0;
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| 191 | if(hdutype_ == IMAGE_HDU)
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| 192 | {
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| 193 | if(bitpix_ != FLOAT_IMG)
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| 194 | {
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| 195 | cout << " The data type on fits file is not float ";
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| 196 | cout << " Conversion to float achieved by cfitsio lib" << endl;
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| 197 | }
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| 198 | // no checking for undefined pixels
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| 199 | int anull;
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| 200 | float fnull= 0.;
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| 201 |
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| 202 | long nels= nentries;
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| 203 | fits_read_img(fptr_,TFLOAT,1,nels,&fnull, map,&anull,&status);
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| 204 | if( status ) printerror( status );
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| 205 | }
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| 206 | else
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| 207 | if(hdutype_ == ASCII_TBL || hdutype_ == BINARY_TBL)
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| 208 | {
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| 209 | GetBinTabFCol(map,nentries, 0);
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| 210 | }
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| 211 | else
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| 212 | {
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| 213 | cout << " hdutype= " << hdutype_ << endl;
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| 214 | throw IOExc("FitsFile::GetSingleColumn this HDU is unknown");
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| 215 | }
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| 216 | }
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| 217 |
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| 218 | void FitsFile::GetSingleColumn( int* map, int nentries) const
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| 219 | {
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| 220 | int status = 0;
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| 221 | if(hdutype_ == IMAGE_HDU)
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| 222 | {
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| 223 | if(bitpix_ != LONG_IMG)
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| 224 | {
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| 225 | cout << " The data type on fits file is not int ";
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| 226 | cout << " Conversion to float achieved by cfitsio lib" << endl;
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| 227 | }
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| 228 | // no checking for undefined pixels
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| 229 | int anull;
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| 230 | float fnull= 0.;
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| 231 |
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| 232 | long nels= nentries;
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| 233 | fits_read_img(fptr_,TINT,1,nels,&fnull,map,&anull,&status);
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| 234 | if( status ) printerror( status );
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| 235 | }
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| 236 | else
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| 237 | if(hdutype_ == ASCII_TBL || hdutype_ == BINARY_TBL)
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| 238 | {
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| 239 | GetBinTabFCol(map,nentries, 0);
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| 240 | }
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| 241 | else
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| 242 | {
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| 243 | cout << " hdutype= " << hdutype_ << endl;
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| 244 | throw IOExc("FitsFile::GetSingleColumn this HDU is unknown");
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| 245 | }
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| 246 | }
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[861] | 247 | void FitsFile::makeHeaderImageOnFits(char type, int nbdim, int* naxisn) const
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[839] | 248 | {
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| 249 | int status = 0;
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[861] | 250 | long naxis = nbdim;
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| 251 | long* naxes = new long[nbdim];
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| 252 | for (int k=0; k< nbdim; k++) naxes[k] = (long)naxisn[k];
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[839] | 253 | if (type == 'D')
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| 254 | fits_create_img(fptr_,DOUBLE_IMG,naxis,naxes,&status);
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| 255 | else
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| 256 | if (type == 'E')
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| 257 | fits_create_img(fptr_,FLOAT_IMG,naxis,naxes,&status);
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| 258 | else
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| 259 | if (type == 'I')
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| 260 | fits_create_img(fptr_,LONG_IMG,naxis,naxes,&status);
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| 261 | else
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| 262 | {
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| 263 | cout << " type of data: " << type << endl;
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| 264 | throw PException("FitsFile:::makeHeaderImageOnFits:unprogrammed type of data ");
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| 265 | }
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[861] | 266 | delete [] naxes;
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[839] | 267 | if( status ) printerror( status );
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| 268 |
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| 269 | }
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| 270 | void FitsFile::putImageToFits(int nbData, double* map) const
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| 271 | {
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| 272 | int status = 0;
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| 273 | long npix= nbData;
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| 274 | fits_write_img(fptr_,TDOUBLE,1,npix,map,&status);
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| 275 | if( status ) printerror( status );
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| 276 | writeSignatureOnFits();
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| 277 | }
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| 278 |
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| 279 | void FitsFile::putImageToFits(int nbData, float* map) const
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| 280 | {
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| 281 | int status = 0;
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| 282 | long npix= nbData;
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| 283 | fits_write_img(fptr_,TFLOAT,1,npix, map,&status);
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| 284 | if( status ) printerror( status );
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| 285 | writeSignatureOnFits();
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| 286 |
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| 287 | }
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| 288 | void FitsFile::putImageToFits( int nbData, int* map) const
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| 289 | {
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| 290 | int status = 0;
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| 291 |
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| 292 | long npix= nbData;
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| 293 | fits_write_img(fptr_,TINT,1,npix,map,&status);
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| 294 | if( status ) printerror( status );
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| 295 | writeSignatureOnFits();
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| 296 | }
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| 297 |
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| 298 |
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[903] | 299 |
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| 300 | void FitsFile::GetImageParameters (fitsfile* fileptr,int& bitpix,int& naxis,vector<int>& naxisn)
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[839] | 301 | {
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[903] | 302 | int hdunum=0;
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| 303 | cout << " Reading a FITS image in HDU : " << fits_get_hdu_num(fileptr,&hdunum) << endl;
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[839] | 304 | int status= 0;
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| 305 |
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| 306 | // bits per pixels
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[903] | 307 | fits_read_key(fileptr,TINT,"BITPIX",&bitpix,NULL,&status);
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[839] | 308 | if( status ) printerror( status );
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| 309 |
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| 310 | // number of dimensions in the FITS array
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[903] | 311 | naxis= 0;
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| 312 | fits_read_key(fileptr,TINT,"NAXIS",&naxis,NULL,&status);
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[839] | 313 | if( status ) printerror( status );
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| 314 |
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[903] | 315 | // read the NAXISn keywords to get image size
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| 316 | long* naxes = new long[naxis] ;
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[839] | 317 | int nfound;
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[903] | 318 | fits_read_keys_lng(fileptr,"NAXIS",1,naxis,naxes,&nfound,&status);
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[839] | 319 | if( status ) printerror( status );
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[903] | 320 | if (nfound != naxis )
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| 321 | cout << " WARNING : " << nfound << " axes found, expected naxis= " << naxis << endl;
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| 322 | for (int k=0; k<naxis; k++)
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[861] | 323 | {
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[903] | 324 | naxisn.push_back( (int)naxes[k] );
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[861] | 325 | }
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[903] | 326 | delete [] naxes;
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| 327 | }
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[839] | 328 |
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[903] | 329 | void FitsFile::KeywordsIntoDVList(fitsfile* fileptr, DVList& dvl)
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| 330 | {
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| 331 | // get number of keywords
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| 332 | int nkeys,keypos;
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| 333 | int status = 0;
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| 334 | fits_get_hdrpos(fileptr,&nkeys,&keypos,&status);
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| 335 | if( status ) printerror( status );
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| 336 |
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| 337 | // put keywords in a DVList object
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| 338 | char keyname[LEN_KEYWORD]= "";
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| 339 | char strval[FLEN_VALUE]= "";
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| 340 | char dtype;
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| 341 | char card[FLEN_CARD];
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| 342 | char *comkey = "COMMENT";
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| 343 |
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| 344 | // shift with the number of mandatory keywords
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| 345 | int num= 8;
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| 346 |
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| 347 | for(int j = num+1; j <= nkeys; j++)
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[861] | 348 | {
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[903] | 349 | fits_read_keyn(fileptr,j,card,strval,NULL,&status);
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| 350 | if(status) printerror(status);
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[839] | 351 |
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[903] | 352 | strncpy(keyname,card,LEN_KEYWORD-1);
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| 353 |
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| 354 | if(strncmp(keyname,comkey,LEN_KEYWORD-1) != 0 && strlen(keyname) != 0
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| 355 | && strlen(strval) != 0)
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| 356 | {
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| 357 | fits_get_keytype(strval,&dtype,&status);
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| 358 | if(status) printerror(status);
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| 359 |
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| 360 | strip(keyname, 'B',' ');
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| 361 | strip(strval, 'B',' ');
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| 362 | strip(strval, 'B','\'');
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| 363 |
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| 364 | switch( dtype )
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| 365 | {
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| 366 | case 'C':
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| 367 | dvl[keyname]= strval;
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| 368 | break;
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| 369 | case 'I':
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| 370 | int ival;
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| 371 | fits_read_key(fileptr,TINT,keyname,&ival,NULL,&status);
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| 372 | dvl[keyname]= (int_4) ival; // Portage mac DY
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| 373 | break;
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| 374 | case 'L':
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| 375 | int ilog;
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| 376 | if(strncmp(strval,"T",1) == 0) ilog= 1;
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| 377 | else ilog= 0;
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| 378 | dvl[keyname]= (int_4) ilog;
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| 379 | break;
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| 380 | case 'F':
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| 381 | double dval;
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| 382 | fits_read_key(fileptr,TDOUBLE,keyname,&dval,NULL,&status);
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| 383 | dvl[keyname]= dval;
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| 384 | break;
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| 385 | }
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| 386 |
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| 387 | }
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| 388 | }
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| 389 | // dvl_.Print();
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| 390 | }
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[839] | 391 |
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[903] | 392 |
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[839] | 393 |
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| 394 | void FitsFile::GetBinTabFCol(double* valeurs,int nentries, int NoCol) const
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| 395 | {
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| 396 | int status= 0;
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| 397 | int DTYPE;
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| 398 | long repeat,width;
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| 399 | fits_get_coltype(fptr_, NoCol+1,&DTYPE,&repeat,&width,&status);
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| 400 | if( DTYPE != TDOUBLE)
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| 401 | {
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| 402 | throw IOExc("FitsFile::GetBinTabFCol, tentative de lecture non double");
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| 403 | }
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| 404 | long nels=nentries;
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| 405 | // no checking for undefined pixels
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| 406 | int anull;
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| 407 | float dnull= 0.;
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| 408 | fits_read_col(fptr_,TDOUBLE,NoCol+1,1,1,nels,&dnull,valeurs,
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| 409 | &anull,&status);
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| 410 | if( status ) printerror( status,"erreur lecture de colonne" );
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| 411 | }
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| 412 |
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| 413 | void FitsFile::GetBinTabFCol(float* valeurs,int nentries, int NoCol) const
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| 414 | {
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| 415 | int status= 0;
|
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| 416 | int DTYPE;
|
---|
| 417 | long repeat,width;
|
---|
| 418 | fits_get_coltype(fptr_, NoCol+1,&DTYPE,&repeat,&width,&status);
|
---|
| 419 | if( DTYPE != TFLOAT)
|
---|
| 420 | {
|
---|
| 421 | throw IOExc("FitsFile::GetBinTabFCol, tentative de lecture non float");
|
---|
| 422 | }
|
---|
| 423 | long nels=nentries;
|
---|
| 424 | // no checking for undefined pixels
|
---|
| 425 | int anull;
|
---|
| 426 | float fnull= 0.;
|
---|
| 427 | fits_read_col(fptr_,TFLOAT,NoCol+1,1,1,nels,&fnull,valeurs,
|
---|
| 428 | &anull,&status);
|
---|
| 429 | if( status ) printerror( status,"erreur lecture de colonne" );
|
---|
| 430 | }
|
---|
| 431 | void FitsFile::GetBinTabFCol(int* valeurs,int nentries, int NoCol) const
|
---|
| 432 | {
|
---|
| 433 | int status= 0;
|
---|
| 434 | int DTYPE;
|
---|
| 435 | long repeat,width;
|
---|
| 436 | fits_get_coltype(fptr_, NoCol+1,&DTYPE,&repeat,&width,&status);
|
---|
| 437 | if( DTYPE != TLONG && DTYPE != TINT && DTYPE != TSHORT )
|
---|
| 438 | {
|
---|
| 439 | throw IOExc("FitsFile::GetBinTabFCol, tentative de lecture non entier");
|
---|
| 440 | }
|
---|
| 441 | long nels=nentries;
|
---|
| 442 | // no checking for undefined pixels
|
---|
| 443 | int anull;
|
---|
| 444 | int inull= 0;
|
---|
| 445 | fits_read_col(fptr_,TINT,NoCol+1,1,1,nels,&inull,valeurs,
|
---|
| 446 | &anull,&status);
|
---|
| 447 | if( status ) printerror( status,"erreur lecture de colonne" );
|
---|
| 448 | }
|
---|
| 449 | void FitsFile::GetBinTabFCol(char** valeurs, int nentries, int NoCol) const
|
---|
| 450 | {
|
---|
| 451 | int status= 0;
|
---|
| 452 | int DTYPE;
|
---|
| 453 | long repeat,width;
|
---|
| 454 | fits_get_coltype(fptr_, NoCol+1,&DTYPE,&repeat,&width,&status);
|
---|
| 455 | if( DTYPE != TSTRING )
|
---|
| 456 | {
|
---|
| 457 | throw IOExc("FitsFile::GetBinTabFCol, tentative de lecture non float");
|
---|
| 458 | }
|
---|
| 459 | long nels=nentries;
|
---|
| 460 | // no checking for undefined pixels
|
---|
| 461 | int anull;
|
---|
| 462 | char* cnull= " ";
|
---|
| 463 | long frow=1;
|
---|
| 464 | long felem=1;
|
---|
| 465 | fits_read_col(fptr_,TSTRING,NoCol+1,frow,felem,nels,cnull,valeurs,
|
---|
| 466 | &anull,&status);
|
---|
| 467 | if( status ) printerror( status,"erreur lecture de colonne" );
|
---|
| 468 | }
|
---|
| 469 | int FitsFile::NbColsFromFits() const
|
---|
| 470 | {
|
---|
| 471 | int status= 0;
|
---|
| 472 | if(hdutype_ == BINARY_TBL) return nbcols_;
|
---|
| 473 | else
|
---|
| 474 | if(hdutype_ == ASCII_TBL || hdutype_ == IMAGE_HDU) return 1;
|
---|
| 475 | else
|
---|
| 476 | {
|
---|
| 477 | cout << " hdutype= " << hdutype_ << endl;
|
---|
| 478 | throw PException("FitsFile::NbColsFromFits, this HDU is unknown");
|
---|
| 479 | }
|
---|
| 480 | }
|
---|
| 481 |
|
---|
| 482 | char FitsFile::ColTypeFromFits(int nocol) const
|
---|
| 483 | {
|
---|
| 484 | int status= 0;
|
---|
| 485 | if(hdutype_ != ASCII_TBL && hdutype_ != BINARY_TBL)
|
---|
| 486 | {
|
---|
| 487 | throw IOExc("FitsFile::TypeFromFits, this HDU is not an ASCII table nor a binary table");
|
---|
| 488 | }
|
---|
| 489 | return types_[nocol];
|
---|
| 490 | }
|
---|
| 491 | int FitsFile::NentriesFromFits(int nocol) const
|
---|
| 492 | {
|
---|
| 493 | int status= 0;
|
---|
| 494 | if(hdutype_ == BINARY_TBL ) return nrows_*repeat_[nocol];
|
---|
| 495 | else
|
---|
| 496 | if(hdutype_ == ASCII_TBL) return nrows_;
|
---|
| 497 | else
|
---|
| 498 | if(hdutype_ == IMAGE_HDU) return nbData_;
|
---|
| 499 | else
|
---|
| 500 | {
|
---|
| 501 | cout << "hdutype= " << hdutype_ << endl;
|
---|
| 502 | throw PException("FitsFile::NentriesFromFits, this HDU is unknown");
|
---|
| 503 | }
|
---|
| 504 | }
|
---|
| 505 |
|
---|
| 506 | string FitsFile::ColNameFromFits(int nocol) const
|
---|
| 507 | {
|
---|
| 508 | int status= 0;
|
---|
| 509 | if(hdutype_ != ASCII_TBL && hdutype_ != BINARY_TBL)
|
---|
| 510 | {
|
---|
| 511 | throw IOExc("FitsFile::TypeFromFits, this HDU is not an ASCII table nor a binary table");
|
---|
| 512 | }
|
---|
| 513 | return noms_[nocol];
|
---|
| 514 | }
|
---|
| 515 | int FitsFile::ColStringLengthFromFits(int nocol) const
|
---|
| 516 | {
|
---|
| 517 | int status= 0;
|
---|
| 518 | if(hdutype_ != ASCII_TBL && hdutype_ != BINARY_TBL)
|
---|
| 519 | {
|
---|
| 520 | throw IOExc("FitsFile::TypeFromFits, this HDU is not an ASCII table nor a binary table");
|
---|
| 521 | }
|
---|
| 522 | int index=-1;
|
---|
| 523 | for (int k=0; k<=nocol; k++)
|
---|
| 524 | {
|
---|
| 525 | if (types_[k] == 'S') index++;
|
---|
| 526 | }
|
---|
| 527 | return taille_des_chaines_[index];
|
---|
| 528 | }
|
---|
| 529 |
|
---|
[903] | 530 |
|
---|
| 531 |
|
---|
| 532 | void FitsFile::GetBinTabParameters(fitsfile* fileptr, int& nbcols, int& nrows,
|
---|
| 533 | vector<int>& repeat,
|
---|
| 534 | vector<string>& noms,
|
---|
| 535 | vector<char>& types,
|
---|
| 536 | vector<int>& taille_des_chaines)
|
---|
[839] | 537 | {
|
---|
| 538 | int status= 0;
|
---|
[903] | 539 | int hdunum=0;
|
---|
| 540 | int hdutype=0;
|
---|
| 541 | fits_get_hdu_num(fileptr,&hdunum);
|
---|
| 542 | fits_get_hdu_type(fileptr, &hdutype, &status);
|
---|
| 543 |
|
---|
| 544 | if(hdutype != ASCII_TBL && hdutype != BINARY_TBL)
|
---|
[839] | 545 | {
|
---|
[903] | 546 | throw IOExc("FitsFile::GetBinTabParameters this HDU is not an ASCII table nor a binary table");
|
---|
[839] | 547 | }
|
---|
[903] | 548 | if(hdutype == ASCII_TBL)
|
---|
| 549 | cout << " Reading a FITS ascii table in HDU : " << hdunum << endl;
|
---|
| 550 | if(hdutype == BINARY_TBL)
|
---|
| 551 | cout << " Reading a FITS binary table in HDU : " << hdunum << endl;
|
---|
[839] | 552 |
|
---|
| 553 | // get the number of columns
|
---|
[903] | 554 | fits_get_num_cols(fileptr, &nbcols,&status);
|
---|
[839] | 555 | if( status ) printerror( status );
|
---|
| 556 |
|
---|
| 557 | // get the number of rows
|
---|
| 558 | long naxis2= 0;
|
---|
[903] | 559 | fits_get_num_rows(fileptr,&naxis2,&status);
|
---|
[839] | 560 | if( status ) printerror( status );
|
---|
[903] | 561 | nrows = (int)naxis2;
|
---|
[839] | 562 |
|
---|
| 563 | // get the datatype, names and the repeat count
|
---|
[903] | 564 | noms.clear();
|
---|
| 565 | noms.reserve(nbcols);
|
---|
| 566 | types.clear();
|
---|
| 567 | types.reserve(nbcols);
|
---|
| 568 | repeat.clear();
|
---|
| 569 | repeat.reserve(nbcols);
|
---|
| 570 | taille_des_chaines.clear();
|
---|
[839] | 571 | char **ttype = new char*[nbcols];
|
---|
[923] | 572 | int ii;
|
---|
| 573 | for (ii=0; ii < nbcols; ii++) ttype[ii]=new char[FLEN_VALUE];
|
---|
[839] | 574 | int nfound;
|
---|
[903] | 575 | fits_read_keys_str(fileptr, "TTYPE",1,nbcols,ttype,&nfound, &status);
|
---|
[839] | 576 | if( status ) printerror( status,"erreur lecture des noms de colonne");
|
---|
| 577 | int rept=0;
|
---|
[923] | 578 | for(ii = 0; ii < nbcols; ii++)
|
---|
[839] | 579 | {
|
---|
| 580 | int DTYPE;
|
---|
| 581 | long width;
|
---|
[903] | 582 | long repete = 0;
|
---|
| 583 | fits_get_coltype(fileptr,ii+1,&DTYPE,&repete,&width,&status);
|
---|
[839] | 584 | if( status ) printerror( status,"erreur lecture type de colonne");
|
---|
[903] | 585 | rept = repete;
|
---|
| 586 | noms.push_back(string(ttype[ii]));
|
---|
[839] | 587 | switch (DTYPE)
|
---|
| 588 | {
|
---|
| 589 | case TDOUBLE :
|
---|
[903] | 590 | types.push_back('D');
|
---|
[839] | 591 | break;
|
---|
| 592 | case TFLOAT :
|
---|
[903] | 593 | types.push_back('E');
|
---|
[839] | 594 | break;
|
---|
| 595 | case TLONG :
|
---|
[903] | 596 | types.push_back('I');
|
---|
[839] | 597 | break;
|
---|
| 598 | case TINT :
|
---|
[903] | 599 | types.push_back('I');
|
---|
[839] | 600 | break;
|
---|
| 601 | case TSHORT :
|
---|
[903] | 602 | types.push_back('I');
|
---|
[839] | 603 | break;
|
---|
| 604 | case TSTRING :
|
---|
[903] | 605 | types.push_back('S');
|
---|
| 606 | taille_des_chaines.push_back(width);
|
---|
[839] | 607 | rept/=width;
|
---|
| 608 | break;
|
---|
| 609 | default :
|
---|
| 610 | cout << " field " << ii+1 << " DTYPE= " << DTYPE << endl;
|
---|
| 611 | throw IOExc("FitsFile:: unknown type of field");
|
---|
| 612 | }
|
---|
[903] | 613 | repeat.push_back(rept);
|
---|
[839] | 614 | }
|
---|
[903] | 615 | }
|
---|
[839] | 616 |
|
---|
| 617 |
|
---|
| 618 |
|
---|
| 619 | void FitsFile::makeHeaderBntblOnFits( char* fieldType, char** Noms, int nentries, int tfields, DVList &dvl, char* extname, vector<int> taille_des_chaines) const
|
---|
| 620 | {
|
---|
| 621 | int status = 0;
|
---|
| 622 | long nrows;
|
---|
| 623 | if (strlen(fieldType) != tfields)
|
---|
| 624 | {
|
---|
| 625 | cout << " nombre de champs :" << tfields << "nombre de types: " << strlen(fieldType) << endl;
|
---|
| 626 | throw ParmError("FitsFile:: fields and types don't match");
|
---|
| 627 |
|
---|
| 628 | }
|
---|
| 629 | char ** ttype= new char*[tfields];
|
---|
| 630 | char ** tform= new char*[tfields];
|
---|
| 631 | char largeur[FLEN_VALUE];
|
---|
| 632 | int noColString=0;
|
---|
| 633 |
|
---|
| 634 |
|
---|
| 635 | for (int k=0; k<tfields;k++)
|
---|
| 636 | {
|
---|
| 637 | char format[FLEN_VALUE];
|
---|
| 638 |
|
---|
| 639 | if(nentries < 1024)
|
---|
| 640 | {
|
---|
| 641 | nrows= nentries;
|
---|
| 642 | if (fieldType[k] == 'A')
|
---|
| 643 | {
|
---|
| 644 | sprintf(largeur,"%d",taille_des_chaines[noColString++]);
|
---|
| 645 | strcpy(format,largeur);
|
---|
| 646 | }
|
---|
| 647 | else strcpy(format,"1");
|
---|
| 648 | }
|
---|
| 649 | else
|
---|
| 650 | {
|
---|
| 651 | nrows = nentries/1024;
|
---|
| 652 | if(nentries%1024 != 0) nrows++;
|
---|
| 653 | if (fieldType[k] == 'A')
|
---|
| 654 | {
|
---|
| 655 | char largaux[FLEN_VALUE];
|
---|
| 656 | sprintf(largeur,"%d",taille_des_chaines[noColString]);
|
---|
| 657 | sprintf(largaux,"%d",1024*taille_des_chaines[noColString]);
|
---|
| 658 | noColString++;
|
---|
| 659 | strcpy(format, largaux);
|
---|
| 660 | }
|
---|
| 661 | else strcpy(format,"1024");
|
---|
| 662 | }
|
---|
| 663 | strncat(format,&fieldType[k],1);
|
---|
| 664 | if (fieldType[k] == 'A')
|
---|
| 665 | {
|
---|
| 666 | strcat(format,largeur);
|
---|
| 667 | }
|
---|
| 668 | ttype[k]= new char[FLEN_VALUE];
|
---|
| 669 | strcpy(ttype[k],Noms[k]);
|
---|
| 670 | tform[k]= new char[FLEN_VALUE];
|
---|
| 671 | strcpy(tform[k],format);
|
---|
| 672 | }
|
---|
| 673 | const char* TypeOfContent= dvl.GetS("TypeOfContent").c_str();
|
---|
| 674 | // value of the EXTNAME keyword
|
---|
| 675 | char extn[FLEN_VALUE];
|
---|
| 676 | strncpy(extn,extname,FLEN_VALUE);
|
---|
| 677 |
|
---|
| 678 | // create a new empty binary table onto the FITS file
|
---|
| 679 | // physical units if they exist, are defined in the DVList object
|
---|
| 680 | // so the NULL pointer is given for the tunit parameters.
|
---|
| 681 | nrows=0;
|
---|
| 682 | fits_create_tbl(fptr_,BINARY_TBL,nrows,tfields,ttype,tform,
|
---|
| 683 | NULL,extn,&status);
|
---|
| 684 | if( status ) printerror( status );
|
---|
| 685 |
|
---|
| 686 | for(int ii = 0; ii < tfields; ii++)
|
---|
| 687 | {
|
---|
| 688 | delete [] ttype[ii];
|
---|
| 689 | delete [] tform[ii];
|
---|
| 690 | }
|
---|
| 691 | delete [] ttype;
|
---|
| 692 | delete [] tform;
|
---|
| 693 | //
|
---|
| 694 | // write supplementary keywords
|
---|
| 695 | //
|
---|
| 696 | // get names and values from the join DVList object
|
---|
[867] | 697 | // dvl.Print();
|
---|
[839] | 698 | DVList::ValList::const_iterator it;
|
---|
| 699 | for(it = dvl.Begin(); it != dvl.End(); it++)
|
---|
| 700 | {
|
---|
| 701 | char keytype= (*it).second.elval.typ;
|
---|
| 702 | char keyname[10];
|
---|
| 703 | strncpy(keyname,(*it).first.substr(0,64).c_str(),10);
|
---|
| 704 | char comment[FLEN_COMMENT];
|
---|
| 705 | switch (keytype)
|
---|
| 706 | {
|
---|
| 707 | case 'I' :
|
---|
| 708 | {
|
---|
| 709 | int ival=(*it).second.elval.mtv.iv;
|
---|
| 710 | strcpy(comment,"I entier");
|
---|
| 711 | fits_write_key(fptr_,TINT,keyname,&ival,comment,&status);
|
---|
| 712 | break;
|
---|
| 713 | }
|
---|
| 714 | case 'D' :
|
---|
| 715 | {
|
---|
| 716 | double dval=(*it).second.elval.mtv.dv;
|
---|
| 717 | strcpy(comment,"D double");
|
---|
| 718 | fits_write_key(fptr_,TDOUBLE,keyname,&dval,comment,&status);
|
---|
| 719 | break;
|
---|
| 720 | }
|
---|
| 721 | case 'S' :
|
---|
| 722 | {
|
---|
| 723 | char strval[128];
|
---|
| 724 | strncpy(strval,(*it).second.elval.mtv.strv,127);
|
---|
| 725 | strcpy(comment,"S character string");
|
---|
| 726 | fits_write_key(fptr_,TSTRING,keyname,&strval,comment,&status);
|
---|
| 727 | break;
|
---|
| 728 | }
|
---|
| 729 | }
|
---|
| 730 | if( status ) printerror( status,"fitsfile: probleme ecriture mot-cle du dvlist" );
|
---|
| 731 | }
|
---|
| 732 |
|
---|
| 733 | }
|
---|
| 734 |
|
---|
| 735 | void FitsFile::putColToFits(int nocol, int nentries, double* donnees) const
|
---|
| 736 | {
|
---|
| 737 | int status = 0;
|
---|
| 738 | int hdutype, hdunum;
|
---|
| 739 | fits_movabs_hdu(fptr_,hdunum_,&hdutype,&status);
|
---|
| 740 | if( status ) printerror(status,"putColToFits: le movabs a foire");
|
---|
| 741 | fits_get_hdu_type(fptr_, &hdutype, &status);
|
---|
[867] | 742 | if(hdutype != ASCII_TBL && hdutype != BINARY_TBL)
|
---|
| 743 | {
|
---|
| 744 | cout << " hdunum= " << hdunum_ << " hdutype= " << hdutype << endl;
|
---|
| 745 | throw IOExc("FitsFile::putColToFits, this HDU is not an ASCII table nor a binary table");
|
---|
| 746 | }
|
---|
[839] | 747 | // if(hdutype == ASCII_TBL && nocol>0)
|
---|
| 748 | // {
|
---|
| 749 | // throw IOExc("FitsFile::putColToFits, this HDU is an ASCII table, nocol>0 forbidden");
|
---|
| 750 | // }
|
---|
| 751 | int code;
|
---|
| 752 | long repeat, width;
|
---|
| 753 | fits_get_coltype(fptr_, nocol+1, &code, &repeat,&width, &status);
|
---|
| 754 | if( code != TDOUBLE)
|
---|
| 755 | {
|
---|
| 756 | cout << " WARNING : types don't match (putColToFits) : on fits file= " << code << " to be written= DOUBLE " << endl;
|
---|
| 757 | }
|
---|
| 758 | fits_write_col(fptr_,TDOUBLE,nocol+1,1,1,nentries, donnees ,&status);
|
---|
| 759 | if( status ) printerror( status,"erreur ecriture du fichier fits" );
|
---|
| 760 | }
|
---|
| 761 | void FitsFile::putColToFits(int nocol, int nentries, float* donnees) const
|
---|
| 762 | {
|
---|
| 763 | int status = 0;
|
---|
| 764 | int hdutype;
|
---|
| 765 | fits_movabs_hdu(fptr_,hdunum_,&hdutype,&status);
|
---|
| 766 | if( status ) printerror(status,"putColToFits: le movabs a foire");
|
---|
| 767 | fits_get_hdu_type(fptr_, &hdutype, &status);
|
---|
| 768 | if(hdutype != ASCII_TBL && hdutype != BINARY_TBL)
|
---|
| 769 | {
|
---|
| 770 | cout << " hdunum= " << hdunum_ << " hdutype= " << hdutype << endl;
|
---|
| 771 | throw IOExc("FitsFile::putColToFits, this HDU is not an ASCII table nor a binary table");
|
---|
| 772 | }
|
---|
| 773 | if(hdutype == ASCII_TBL && nocol>0)
|
---|
| 774 | {
|
---|
| 775 | throw IOExc("FitsFile::putColToFits, this HDU is an ASCII table, nocol>0 forbidden");
|
---|
| 776 | }
|
---|
| 777 | int code;
|
---|
| 778 | long repeat, width;
|
---|
| 779 | fits_get_coltype(fptr_, nocol+1, &code, &repeat,&width, &status);
|
---|
| 780 | if( code != TFLOAT)
|
---|
| 781 | {
|
---|
| 782 | cout << " WARNING : types don't match (putColToFits) : on fits file= " << code << " (FITS code), to be written= FLOAT " << endl;
|
---|
| 783 | }
|
---|
| 784 | fits_write_col(fptr_,TFLOAT,nocol+1,1,1,nentries, donnees ,&status);
|
---|
| 785 | if( status ) printerror( status,"erreur ecriture du fichier fits" );
|
---|
| 786 | }
|
---|
| 787 | void FitsFile::putColToFits(int nocol, int nentries, int* donnees) const
|
---|
| 788 | {
|
---|
| 789 | int status = 0;
|
---|
| 790 | int hdutype;
|
---|
| 791 | fits_movabs_hdu(fptr_,hdunum_,&hdutype,&status);
|
---|
| 792 | if( status ) printerror(status,"putColToFits: le movabs a foire");
|
---|
| 793 | fits_get_hdu_type(fptr_, &hdutype, &status);
|
---|
| 794 | if(hdutype != ASCII_TBL && hdutype != BINARY_TBL)
|
---|
| 795 | {
|
---|
| 796 | cout << " hdunum= " << hdunum_ << " hdutype= " << hdutype << endl;
|
---|
| 797 | throw IOExc("FitsFile::putColToFits, this HDU is not an ASCII table nor a binary table");
|
---|
| 798 | }
|
---|
| 799 | if(hdutype == ASCII_TBL && nocol>0)
|
---|
| 800 | {
|
---|
| 801 | throw IOExc("FitsFile::putColToFits, this HDU is an ASCII table, nocol>0 forbidden");
|
---|
| 802 | }
|
---|
| 803 | int code;
|
---|
| 804 | long repeat, width;
|
---|
| 805 | fits_get_coltype(fptr_, nocol+1, &code, &repeat,&width, &status);
|
---|
| 806 | if( code != TLONG && code != TINT && code != TSHORT )
|
---|
| 807 | {
|
---|
| 808 | cout << " WARNING : types don't match (putColToFits) : on fits file= " << code << " (FITS code), to be written= FLOAT " << endl;
|
---|
| 809 | }
|
---|
| 810 | fits_write_col(fptr_,TINT,nocol+1,1,1,nentries, donnees ,&status);
|
---|
| 811 | if( status ) printerror( status,"erreur ecriture du fichier fits" );
|
---|
| 812 | }
|
---|
| 813 | void FitsFile::putColToFits(int nocol, int nentries, char** donnees) const
|
---|
| 814 | {
|
---|
| 815 | int status = 0;
|
---|
| 816 | int hdutype;
|
---|
| 817 | fits_movabs_hdu(fptr_,hdunum_,&hdutype,&status);
|
---|
| 818 | if( status ) printerror(status,"putColToFits: le movabs a foire");
|
---|
| 819 | fits_get_hdu_type(fptr_, &hdutype, &status);
|
---|
| 820 | if(hdutype != ASCII_TBL && hdutype != BINARY_TBL)
|
---|
| 821 | {
|
---|
| 822 | cout << " hdunum= " << hdunum_ << " hdutype= " << hdutype << endl;
|
---|
| 823 | throw IOExc("FitsFile::putColToFits, this HDU is not an ASCII table nor a binary table");
|
---|
| 824 | }
|
---|
| 825 | if(hdutype == ASCII_TBL && nocol>0)
|
---|
| 826 | {
|
---|
| 827 | throw IOExc("FitsFile::putColToFits, this HDU is an ASCII table, nocol>0 forbidden");
|
---|
| 828 | }
|
---|
| 829 | int code;
|
---|
| 830 | long repeat, width;
|
---|
| 831 | fits_get_coltype(fptr_, nocol+1, &code, &repeat,&width, &status);
|
---|
| 832 | if( code != TSTRING)
|
---|
| 833 | {
|
---|
| 834 | cout << " WARNING : types don't match (putColToFits) : on fits file= " << code << " (FITS code), to be written= char** " << endl;
|
---|
| 835 | }
|
---|
| 836 | fits_write_col(fptr_,TSTRING,nocol+1,1,1,nentries, donnees ,&status);
|
---|
| 837 | if( status ) printerror( status,"erreur ecriture du fichier fits" );
|
---|
| 838 | }
|
---|
| 839 |
|
---|
| 840 |
|
---|
| 841 |
|
---|
| 842 |
|
---|
| 843 | void FitsFile::readheader()
|
---|
| 844 | //*************************************/
|
---|
| 845 | //* Print out all the header keywords */
|
---|
| 846 | //*************************************/
|
---|
| 847 | {
|
---|
| 848 | // standard string lengths defined in fitsioc.h
|
---|
| 849 | char card[FLEN_CARD];
|
---|
| 850 |
|
---|
| 851 | int status = 0;
|
---|
| 852 |
|
---|
| 853 | // get the number of keywords
|
---|
| 854 | int nkeys, keypos;
|
---|
| 855 | if( fits_get_hdrpos(fptr_,&nkeys,&keypos,&status) )
|
---|
| 856 | printerror( status );
|
---|
| 857 |
|
---|
| 858 | cout << " Header listing for HDU : " << hdunum_ << endl;
|
---|
| 859 | for(int jj = 1; jj <= nkeys; jj++)
|
---|
| 860 | {
|
---|
| 861 | if( fits_read_record(fptr_,jj,card,&status) )
|
---|
| 862 | printerror( status );
|
---|
| 863 |
|
---|
| 864 | // print the keyword card
|
---|
| 865 | cout << card << endl;
|
---|
| 866 | }
|
---|
| 867 | cout << "END" << endl;
|
---|
| 868 | }
|
---|
| 869 |
|
---|
| 870 |
|
---|
| 871 | void FitsFile::writeSignatureOnFits() const
|
---|
| 872 | {
|
---|
| 873 | int status = 0;
|
---|
| 874 | char keyname[LEN_KEYWORD];
|
---|
| 875 | char strval[FLEN_VALUE];
|
---|
| 876 | char comment[FLEN_COMMENT];
|
---|
| 877 |
|
---|
| 878 | strcpy(keyname,"CREATOR");
|
---|
| 879 | strcpy(strval,"SOPHYA");
|
---|
| 880 | strcpy(comment,"SOPHYA Package - FitsFile");
|
---|
| 881 | fits_write_key(fptr_,TSTRING,keyname,&strval,comment,&status);
|
---|
| 882 | }
|
---|
| 883 |
|
---|
[903] | 884 |
|
---|
| 885 |
|
---|
| 886 |
|
---|
| 887 | void FitsFile::printerror(int &status)
|
---|
[839] | 888 | //*****************************************************/
|
---|
| 889 | //* Print out cfitsio error messages and exit program */
|
---|
| 890 | //*****************************************************/
|
---|
| 891 | {
|
---|
| 892 | if( status )
|
---|
| 893 | {
|
---|
| 894 | fits_report_error(stderr,status);
|
---|
| 895 | throw IOExc("FitsFile:: error FITSIO status");
|
---|
| 896 | }
|
---|
| 897 | return;
|
---|
| 898 | }
|
---|
| 899 |
|
---|
[903] | 900 | void FitsFile::printerror(int& status, char* texte)
|
---|
[839] | 901 | //*****************************************************/
|
---|
| 902 | //* Print out cfitsio error messages and exit program */
|
---|
| 903 | //*****************************************************/
|
---|
| 904 | {
|
---|
| 905 | // print out cfitsio error messages and exit program
|
---|
| 906 | // print error report
|
---|
| 907 | fits_report_error(stderr, status);
|
---|
| 908 | cout << " erreur:: " << texte << endl;
|
---|
| 909 | throw IOExc("FitsFile:: error FITSIO status");
|
---|
| 910 | }
|
---|