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source: Sophya/trunk/SophyaExt/FitsIOServer/fitsfile.cc@ 971

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Last change on this file since 971 was 971, checked in by ansari, 25 years ago
mise a jour 27/04/00 GLM
File size: 28.3 KB

Rev	Line
[949]	1	#include "machdefs.h"
	2	#include <stdlib.h>
[839]	3	#include "fitsfile.h"
	4	#include "pexceptions.h"
	5	#include "strutil.h"
[903]	6	#include "anydataobj.h"
	7	#include "fitsspherehealpix.h"
[839]	8	FitsFile::FitsFile()
	9	{
	10	fptr_= NULL;
	11	hdutype_= 0;
	12	hdunum_ = 0;
	13
	14	nrows_ = 0;
	15	}
	16
	17
	18	FitsFile::~FitsFile()
	19	{
	20	int status = 0;
[903]	21	if( fptr_ != NULL)
	22	{
	23	fits_close_file(fptr_,&status);
	24	delete fptr_;
	25	}
[839]	26	if( status ) printerror( status );
	27	}
[903]	28
	29
	30	int FitsFile::NbBlocks(char flnm[])
	31	{
	32	int status = 0;
	33	int nbhdu = 0;
	34	fitsfile* fileptr;
	35	fits_open_file(&fileptr,flnm,READONLY,&status);
	36	if( status ) printerror( status, "NbBlocks: erreur ouverture fichier" );
	37	fits_get_num_hdus(fileptr, &nbhdu, &status);
	38	fits_close_file(fileptr,&status);
	39	return nbhdu;
	40	}
	41
	42	void FitsFile::getBlockType(char flnm[], int hdunum, string& typeOfExtension, int& naxis, vector<int>& naxisn, string& dataType, DVList& dvl )
	43	{
	44	int status = 0;
	45	fitsfile* fileptr;
	46	fits_open_file(&fileptr,flnm,READONLY,&status);
	47	if( status ) printerror( status, "getBlockType: erreur ouverture fichier" );
	48	// move to the specified HDU number
	49	int hdutype = 0;
	50	fits_movabs_hdu(fileptr,hdunum,&hdutype,&status);
	51	if( status ) printerror( status,"getBlockType: erreur movabs");
	52	if(hdutype == IMAGE_HDU)
	53	{
	54	typeOfExtension = "IMAGE";
	55	int bitpix;
	56	GetImageParameters (fileptr, bitpix, naxis, naxisn);
	57	if(bitpix == DOUBLE_IMG) dataType = "double";
	58	else
	59	if(bitpix == FLOAT_IMG) dataType = "float";
	60	else
	61	if(bitpix == LONG_IMG \|\| bitpix == SHORT_IMG ) dataType = "int";
	62	else
	63	{
	64	cout << " bitpix= " << bitpix << endl;
	65	throw PException(" FitsFile::getBlockType : unsupprted FITS data type");
	66	}
	67
	68	}
	69	else
	70	if(hdutype == ASCII_TBL \|\| hdutype == BINARY_TBL)
	71	{
	72	int nrows = 0;
	73	vector<string> noms;
	74	vector<char> types;
	75	vector<int> taille_des_chaines;
[971]	76	GetBinTabParameters(fileptr, naxis, nrows, naxisn, noms, types, taille_des_chaines);
	77	int k;
	78	for (k=0; k< naxisn.size(); k++) naxisn[k] *= nrows;
[903]	79	if(hdutype == ASCII_TBL)
	80	{
	81	typeOfExtension = "ASCII_TBL";
	82	dataType = "ASCII";
	83	}
	84	else
	85	{
	86	typeOfExtension = "BINARY_TBL";
	87	if(types[0] == 'D') dataType = "double";
	88	else
	89	if(types[0] == 'E') dataType = "float";
	90	else
	91	if(types[0] == 'I' ) dataType = "int";
	92	else
	93	if(types[0] == 'S' ) dataType = "char*";
	94	else
	95	{
	96	cout << " types[0]= " << types[0] << endl;
	97	throw PException(" FitsFile::getBlockType : unsupprted FITS data type");
	98	}
	99	}
	100	}
	101	else
	102	{
	103	cout << " hdutype= " << hdutype << endl;
	104	throw IOExc("FitsFile::getBlockType: this HDU type is unknown");
	105	}
	106
[971]	107	KeywordsIntoDVList(fileptr, dvl, hdunum);
[903]	108	fits_close_file(fileptr,&status);
	109	}
	110
[839]	111	void FitsFile::ReadF(char flnm[],int hdunum)
	112	{
	113	int status = 0;
	114	hdutype_= 0;
[971]	115
[839]	116	fits_open_file(&fptr_,flnm,READONLY,&status);
	117	if( status ) printerror( status );
[971]	118	//
	119	if (hdunum <= 1)
	120	{
	121	hdunum_ = 1;
	122	// presence of image ?
	123	int naxis= 0;
	124	fits_read_key(fptr_,TINT,"NAXIS",&naxis,NULL,&status);
	125	if( status ) printerror( status );
	126	if (naxis > 0 ) // there is an image
	127	{
	128	hdutype_ == IMAGE_HDU;
	129	GetImageParameters (fptr_, bitpix_, naxis_, naxisn_);
	130	nbData_ = 1;
	131	int k;
	132	for (k=0; k<naxis_; k++) if (naxisn_[k] > 0) nbData_ *= naxisn_[k];
	133	KeywordsIntoDVList(fptr_, dvl_,hdunum_);
	134	}
	135	else
	136	{
	137	throw PException(" first header : no image, probably error in hdunum");
	138	}
	139	//
	140	}
	141	else
	142	{
	143	hdunum_ = hdunum-1;
	144	int hdutype;
	145	fits_movabs_hdu(fptr_,hdunum_,&hdutype,&status);
	146	if( status ) printerror( status,":FitsFile::ReadF : erreur movabs");
	147	moveToFollowingHeader();
	148	}
	149	ReadFromFits(*this);
	150	}
[839]	151
[971]	152
	153	void FitsFile::moveToFollowingHeader()
	154	{
	155	int status = 0;
[839]	156	int hdutype;
[971]	157	fits_movrel_hdu(fptr_, 1,&hdutype,&status);
	158	if( status ) printerror( status," lecture du header suivant" );
	159	hdunum_++;
[839]	160	hdutype_= hdutype;
	161	if(hdutype_ == IMAGE_HDU)
	162	{
[903]	163	GetImageParameters (fptr_, bitpix_, naxis_, naxisn_);
	164	nbData_ = 1;
[971]	165	int k;
	166	for (k=0; k<naxis_; k++) if (naxisn_[k] > 0) nbData_ *= naxisn_[k];
	167	KeywordsIntoDVList(fptr_, dvl_,hdunum_);
[839]	168	}
	169	if(hdutype_ == ASCII_TBL \|\| hdutype_ == BINARY_TBL)
	170	{
[903]	171	GetBinTabParameters(fptr_,nbcols_, nrows_,repeat_, noms_, types_, taille_des_chaines_);
[971]	172	KeywordsIntoDVList(fptr_, dvl_, hdunum_);
[839]	173	}
[971]	174	}
[839]	175
[971]	176
	177	void FitsFile::WriteF(char flnm[], bool OldFile)
[839]	178	{
	179	int status = 0;
	180	hdutype_= 0;
[971]	181	hdunum_ = 0;
	182
	183
[839]	184	// create new FITS file
[971]	185	if (!OldFile)
	186	{
	187	fits_create_file(&fptr_,flnm,&status);
	188	if( status ) printerror(status,"file already exists");
	189	}
	190	else
	191	{
	192	fits_open_file(&fptr_,flnm,READWRITE,&status);
	193	if( status ) printerror(status,"file does not exist");
	194	fits_get_num_hdus(fptr_, &hdunum_, &status);
	195	int hdutype;
	196	fits_movabs_hdu(fptr_,hdunum_,&hdutype,&status);
	197	if( status ) printerror( status,":FitsFile::WriteF : erreur movabs");
	198
	199	}
[839]	200	WriteToFits(*this);
	201	}
	202	void FitsFile::GetSingleColumn(double* map, int nentries) const
	203	{
	204	int status = 0;
	205	if(hdutype_ == IMAGE_HDU)
	206	{
	207
	208	if(bitpix_ != DOUBLE_IMG)
	209	{
	210	cout << " The data type on fits file is not double...";
	211	cout << " Conversion to double achieved by cfitsio lib" << endl;
	212	}
	213
	214	// no checking for undefined pixels
	215	int anull;
	216	double dnull= 0.;
	217
	218	long nels= nentries;
	219	fits_read_img(fptr_,TDOUBLE,1,nels,&dnull,map,&anull,&status);
	220	if( status ) printerror( status );
	221	}
	222	else
	223	if(hdutype_ == ASCII_TBL \|\| hdutype_ == BINARY_TBL)
	224	{
	225	GetBinTabFCol(map,nentries, 0);
	226	}
	227	else
	228	{
	229	cout << " hdutype= " << hdutype_ << endl;
	230	throw IOExc("FitsFile::GetSingleColumn this HDU is unknown");
	231	}
	232	}
	233
	234	void FitsFile::GetSingleColumn(float* map, int nentries) const
	235	{
	236	int status = 0;
	237	if(hdutype_ == IMAGE_HDU)
	238	{
	239	if(bitpix_ != FLOAT_IMG)
	240	{
	241	cout << " The data type on fits file is not float ";
	242	cout << " Conversion to float achieved by cfitsio lib" << endl;
	243	}
	244	// no checking for undefined pixels
	245	int anull;
	246	float fnull= 0.;
	247
	248	long nels= nentries;
	249	fits_read_img(fptr_,TFLOAT,1,nels,&fnull, map,&anull,&status);
	250	if( status ) printerror( status );
	251	}
	252	else
	253	if(hdutype_ == ASCII_TBL \|\| hdutype_ == BINARY_TBL)
	254	{
	255	GetBinTabFCol(map,nentries, 0);
	256	}
	257	else
	258	{
	259	cout << " hdutype= " << hdutype_ << endl;
	260	throw IOExc("FitsFile::GetSingleColumn this HDU is unknown");
	261	}
	262	}
	263
	264	void FitsFile::GetSingleColumn( int* map, int nentries) const
	265	{
	266	int status = 0;
	267	if(hdutype_ == IMAGE_HDU)
	268	{
	269	if(bitpix_ != LONG_IMG)
	270	{
	271	cout << " The data type on fits file is not int ";
	272	cout << " Conversion to float achieved by cfitsio lib" << endl;
	273	}
	274	// no checking for undefined pixels
	275	int anull;
	276	float fnull= 0.;
	277
	278	long nels= nentries;
	279	fits_read_img(fptr_,TINT,1,nels,&fnull,map,&anull,&status);
	280	if( status ) printerror( status );
	281	}
	282	else
	283	if(hdutype_ == ASCII_TBL \|\| hdutype_ == BINARY_TBL)
	284	{
	285	GetBinTabFCol(map,nentries, 0);
	286	}
	287	else
	288	{
	289	cout << " hdutype= " << hdutype_ << endl;
	290	throw IOExc("FitsFile::GetSingleColumn this HDU is unknown");
	291	}
	292	}
[971]	293	void FitsFile::makeHeaderImageOnFits(char type, int nbdim, int* naxisn)
[839]	294	{
	295	int status = 0;
[861]	296	long naxis = nbdim;
	297	long* naxes = new long[nbdim];
[971]	298	int k;
	299	for (k=0; k< nbdim; k++) naxes[k] = (long)naxisn[k];
[839]	300	if (type == 'D')
	301	fits_create_img(fptr_,DOUBLE_IMG,naxis,naxes,&status);
	302	else
	303	if (type == 'E')
	304	fits_create_img(fptr_,FLOAT_IMG,naxis,naxes,&status);
	305	else
	306	if (type == 'I')
	307	fits_create_img(fptr_,LONG_IMG,naxis,naxes,&status);
	308	else
	309	{
	310	cout << " type of data: " << type << endl;
	311	throw PException("FitsFile:::makeHeaderImageOnFits:unprogrammed type of data ");
	312	}
[971]	313
	314	hdunum_++;
[861]	315	delete [] naxes;
[839]	316	if( status ) printerror( status );
	317
	318	}
	319	void FitsFile::putImageToFits(int nbData, double* map) const
	320	{
	321	int status = 0;
	322	long npix= nbData;
	323	fits_write_img(fptr_,TDOUBLE,1,npix,map,&status);
	324	if( status ) printerror( status );
	325	writeSignatureOnFits();
	326	}
	327
	328	void FitsFile::putImageToFits(int nbData, float* map) const
	329	{
	330	int status = 0;
	331	long npix= nbData;
	332	fits_write_img(fptr_,TFLOAT,1,npix, map,&status);
	333	if( status ) printerror( status );
	334	writeSignatureOnFits();
	335
	336	}
	337	void FitsFile::putImageToFits( int nbData, int* map) const
	338	{
	339	int status = 0;
	340
	341	long npix= nbData;
	342	fits_write_img(fptr_,TINT,1,npix,map,&status);
	343	if( status ) printerror( status );
	344	writeSignatureOnFits();
	345	}
	346
	347
[903]	348
	349	void FitsFile::GetImageParameters (fitsfile* fileptr,int& bitpix,int& naxis,vector<int>& naxisn)
[839]	350	{
[903]	351	int hdunum=0;
	352	cout << " Reading a FITS image in HDU : " << fits_get_hdu_num(fileptr,&hdunum) << endl;
[839]	353	int status= 0;
	354
	355	// bits per pixels
[903]	356	fits_read_key(fileptr,TINT,"BITPIX",&bitpix,NULL,&status);
[839]	357	if( status ) printerror( status );
	358
	359	// number of dimensions in the FITS array
[903]	360	naxis= 0;
	361	fits_read_key(fileptr,TINT,"NAXIS",&naxis,NULL,&status);
[839]	362	if( status ) printerror( status );
	363
[903]	364	// read the NAXISn keywords to get image size
	365	long* naxes = new long[naxis] ;
[839]	366	int nfound;
[903]	367	fits_read_keys_lng(fileptr,"NAXIS",1,naxis,naxes,&nfound,&status);
[839]	368	if( status ) printerror( status );
[903]	369	if (nfound != naxis )
	370	cout << " WARNING : " << nfound << " axes found, expected naxis= " << naxis << endl;
[971]	371	int k;
	372	for (k=0; k<naxis; k++)
[861]	373	{
[903]	374	naxisn.push_back( (int)naxes[k] );
[861]	375	}
[903]	376	delete [] naxes;
	377	}
[839]	378
[971]	379	void FitsFile::KeywordsIntoDVList(fitsfile* fileptr, DVList& dvl, int hdunum)
[903]	380	{
[971]	381	int status = 0;
	382	int hdutype;
	383	fits_movabs_hdu(fileptr,hdunum,&hdutype,&status);
	384	if( status ) printerror( status,":KeywordsIntoDVList : erreur movabs");
[903]	385	// get number of keywords
	386	int nkeys,keypos;
	387	fits_get_hdrpos(fileptr,&nkeys,&keypos,&status);
	388	if( status ) printerror( status );
	389
	390	// put keywords in a DVList object
	391	char keyname[LEN_KEYWORD]= "";
	392	char strval[FLEN_VALUE]= "";
	393	char dtype;
	394	char card[FLEN_CARD];
	395	char *comkey = "COMMENT";
	396
	397	// shift with the number of mandatory keywords
	398	int num= 8;
	399
[971]	400	int j;
	401	for(j = num+1; j <= nkeys; j++)
[861]	402	{
[903]	403	fits_read_keyn(fileptr,j,card,strval,NULL,&status);
	404	if(status) printerror(status);
[839]	405
[903]	406	strncpy(keyname,card,LEN_KEYWORD-1);
	407
	408	if(strncmp(keyname,comkey,LEN_KEYWORD-1) != 0 && strlen(keyname) != 0
	409	&& strlen(strval) != 0)
	410	{
	411	fits_get_keytype(strval,&dtype,&status);
	412	if(status) printerror(status);
	413
	414	strip(keyname, 'B',' ');
	415	strip(strval, 'B',' ');
	416	strip(strval, 'B','\'');
	417
	418	switch( dtype )
	419	{
	420	case 'C':
	421	dvl[keyname]= strval;
	422	break;
	423	case 'I':
	424	int ival;
	425	fits_read_key(fileptr,TINT,keyname,&ival,NULL,&status);
	426	dvl[keyname]= (int_4) ival; // Portage mac DY
	427	break;
	428	case 'L':
	429	int ilog;
	430	if(strncmp(strval,"T",1) == 0) ilog= 1;
	431	else ilog= 0;
	432	dvl[keyname]= (int_4) ilog;
	433	break;
	434	case 'F':
	435	double dval;
	436	fits_read_key(fileptr,TDOUBLE,keyname,&dval,NULL,&status);
	437	dvl[keyname]= dval;
	438	break;
	439	}
	440
	441	}
	442	}
	443	// dvl_.Print();
	444	}
[839]	445
[903]	446
[839]	447
	448	void FitsFile::GetBinTabFCol(double* valeurs,int nentries, int NoCol) const
	449	{
	450	int status= 0;
	451	int DTYPE;
	452	long repeat,width;
	453	fits_get_coltype(fptr_, NoCol+1,&DTYPE,&repeat,&width,&status);
	454	if( DTYPE != TDOUBLE)
	455	{
	456	throw IOExc("FitsFile::GetBinTabFCol, tentative de lecture non double");
	457	}
	458	long nels=nentries;
[971]	459	int anull;
[839]	460	// no checking for undefined pixels
[971]	461	double dnull= 0.;
	462	// fits_read_key(fptr_,TDOUBLE,"BAD_DATA",&dnull,NULL,&status);
	463	// if (status != 0)
	464	// {
	465	// dnull = -1.6375e30; // default value
	466	// status = 0;
	467	// }
	468	if (nentries != nrows_*repeat)
	469	{
	470	cout << " found " << nentries << " pixels, expected: " << nrows_*repeat << endl;
	471	throw PException(" FitsFile:::GetBinTabFCol ");
	472	}
[839]	473	fits_read_col(fptr_,TDOUBLE,NoCol+1,1,1,nels,&dnull,valeurs,
	474	&anull,&status);
	475	if( status ) printerror( status,"erreur lecture de colonne" );
[971]	476
[839]	477	}
	478
	479	void FitsFile::GetBinTabFCol(float* valeurs,int nentries, int NoCol) const
	480	{
	481	int status= 0;
	482	int DTYPE;
	483	long repeat,width;
	484	fits_get_coltype(fptr_, NoCol+1,&DTYPE,&repeat,&width,&status);
	485	if( DTYPE != TFLOAT)
	486	{
	487	throw IOExc("FitsFile::GetBinTabFCol, tentative de lecture non float");
	488	}
	489	long nels=nentries;
[971]	490	int anull;
[839]	491	// no checking for undefined pixels
	492	float fnull= 0.;
[971]	493	// fits_read_key(fptr_,TFLOAT,"BAD_DATA",&fnull,NULL,&status);
	494	// if (status != 0)
	495	// {
	496	// fnull = -1.6375e30; // default value
	497	// status = 0;
	498	// }
	499	if (nentries != nrows_*repeat)
	500	{
	501	cout << " found " << nentries << " pixels, expected: " << nrows_*repeat << endl;
	502	throw PException(" FitsFile:::GetBinTabFCol ");
	503	}
[839]	504	fits_read_col(fptr_,TFLOAT,NoCol+1,1,1,nels,&fnull,valeurs,
	505	&anull,&status);
	506	if( status ) printerror( status,"erreur lecture de colonne" );
	507	}
	508	void FitsFile::GetBinTabFCol(int* valeurs,int nentries, int NoCol) const
	509	{
[971]	510	cout <<" entree GetBinTabFCol " << endl;
[839]	511	int status= 0;
	512	int DTYPE;
	513	long repeat,width;
	514	fits_get_coltype(fptr_, NoCol+1,&DTYPE,&repeat,&width,&status);
	515	if( DTYPE != TLONG && DTYPE != TINT && DTYPE != TSHORT )
	516	{
	517	throw IOExc("FitsFile::GetBinTabFCol, tentative de lecture non entier");
	518	}
	519	long nels=nentries;
	520	// no checking for undefined pixels
	521	int anull;
	522	int inull= 0;
[971]	523	// fits_read_key(fptr_,TINT,"BAD_DATA",&inull,NULL,&status);
	524	// if (status != 0)
	525	// {
	526	// inull = -999999; // default value
	527	// status = 0;
	528	// }
	529	if (nentries != nrows_*repeat)
	530	{
	531	cout << " found " << nentries << " pixels, expected: " << nrows_*repeat << endl;
	532	throw PException(" FitsFile:::GetBinTabFCol ");
	533	}
[839]	534	fits_read_col(fptr_,TINT,NoCol+1,1,1,nels,&inull,valeurs,
	535	&anull,&status);
	536	if( status ) printerror( status,"erreur lecture de colonne" );
	537	}
	538	void FitsFile::GetBinTabFCol(char** valeurs, int nentries, int NoCol) const
	539	{
	540	int status= 0;
	541	int DTYPE;
	542	long repeat,width;
	543	fits_get_coltype(fptr_, NoCol+1,&DTYPE,&repeat,&width,&status);
	544	if( DTYPE != TSTRING )
	545	{
	546	throw IOExc("FitsFile::GetBinTabFCol, tentative de lecture non float");
	547	}
	548	long nels=nentries;
	549	// no checking for undefined pixels
	550	int anull;
[971]	551	char* cnull= "";
	552	if (nentries != nrows_*repeat/width)
	553	{
	554	cout << " found " << nentries << " pixels, expected: " << nrows_*repeat/width << endl;
	555	throw PException(" FitsFile:::GetBinTabFCol ");
	556	}
[839]	557	long frow=1;
	558	long felem=1;
	559	fits_read_col(fptr_,TSTRING,NoCol+1,frow,felem,nels,cnull,valeurs,
	560	&anull,&status);
	561	if( status ) printerror( status,"erreur lecture de colonne" );
	562	}
	563	int FitsFile::NbColsFromFits() const
	564	{
	565	int status= 0;
	566	if(hdutype_ == BINARY_TBL) return nbcols_;
	567	else
	568	if(hdutype_ == ASCII_TBL \|\| hdutype_ == IMAGE_HDU) return 1;
	569	else
	570	{
	571	cout << " hdutype= " << hdutype_ << endl;
	572	throw PException("FitsFile::NbColsFromFits, this HDU is unknown");
	573	}
	574	}
	575
	576	char FitsFile::ColTypeFromFits(int nocol) const
	577	{
	578	int status= 0;
	579	if(hdutype_ != ASCII_TBL && hdutype_ != BINARY_TBL)
	580	{
	581	throw IOExc("FitsFile::TypeFromFits, this HDU is not an ASCII table nor a binary table");
	582	}
	583	return types_[nocol];
	584	}
	585	int FitsFile::NentriesFromFits(int nocol) const
	586	{
	587	int status= 0;
	588	if(hdutype_ == BINARY_TBL ) return nrows_*repeat_[nocol];
	589	else
	590	if(hdutype_ == ASCII_TBL) return nrows_;
	591	else
	592	if(hdutype_ == IMAGE_HDU) return nbData_;
	593	else
	594	{
	595	cout << "hdutype= " << hdutype_ << endl;
	596	throw PException("FitsFile::NentriesFromFits, this HDU is unknown");
	597	}
	598	}
	599
	600	string FitsFile::ColNameFromFits(int nocol) const
	601	{
	602	int status= 0;
	603	if(hdutype_ != ASCII_TBL && hdutype_ != BINARY_TBL)
	604	{
	605	throw IOExc("FitsFile::TypeFromFits, this HDU is not an ASCII table nor a binary table");
	606	}
	607	return noms_[nocol];
	608	}
	609	int FitsFile::ColStringLengthFromFits(int nocol) const
	610	{
	611	int status= 0;
	612	if(hdutype_ != ASCII_TBL && hdutype_ != BINARY_TBL)
	613	{
	614	throw IOExc("FitsFile::TypeFromFits, this HDU is not an ASCII table nor a binary table");
	615	}
	616	int index=-1;
[971]	617	int k;
	618	for (k=0; k<=nocol; k++)
[839]	619	{
	620	if (types_[k] == 'S') index++;
	621	}
	622	return taille_des_chaines_[index];
	623	}
	624
[903]	625
	626
	627	void FitsFile::GetBinTabParameters(fitsfile* fileptr, int& nbcols, int& nrows,
	628	vector<int>& repeat,
	629	vector<string>& noms,
	630	vector<char>& types,
	631	vector<int>& taille_des_chaines)
[839]	632	{
	633	int status= 0;
[903]	634	int hdunum=0;
	635	int hdutype=0;
	636	fits_get_hdu_num(fileptr,&hdunum);
	637	fits_get_hdu_type(fileptr, &hdutype, &status);
	638
	639	if(hdutype != ASCII_TBL && hdutype != BINARY_TBL)
[839]	640	{
[903]	641	throw IOExc("FitsFile::GetBinTabParameters this HDU is not an ASCII table nor a binary table");
[839]	642	}
[903]	643	if(hdutype == ASCII_TBL)
	644	cout << " Reading a FITS ascii table in HDU : " << hdunum << endl;
	645	if(hdutype == BINARY_TBL)
	646	cout << " Reading a FITS binary table in HDU : " << hdunum << endl;
[839]	647
	648	// get the number of columns
[903]	649	fits_get_num_cols(fileptr, &nbcols,&status);
[839]	650	if( status ) printerror( status );
	651
	652	// get the number of rows
	653	long naxis2= 0;
[903]	654	fits_get_num_rows(fileptr,&naxis2,&status);
[839]	655	if( status ) printerror( status );
[903]	656	nrows = (int)naxis2;
[839]	657
	658	// get the datatype, names and the repeat count
[903]	659	noms.clear();
	660	noms.reserve(nbcols);
	661	types.clear();
	662	types.reserve(nbcols);
	663	repeat.clear();
	664	repeat.reserve(nbcols);
	665	taille_des_chaines.clear();
[839]	666	char *ttype = new char[nbcols];
[923]	667	int ii;
	668	for (ii=0; ii < nbcols; ii++) ttype[ii]=new char[FLEN_VALUE];
[839]	669	int nfound;
[903]	670	fits_read_keys_str(fileptr, "TTYPE",1,nbcols,ttype,&nfound, &status);
[839]	671	if( status ) printerror( status,"erreur lecture des noms de colonne");
	672	int rept=0;
[923]	673	for(ii = 0; ii < nbcols; ii++)
[839]	674	{
	675	int DTYPE;
	676	long width;
[903]	677	long repete = 0;
	678	fits_get_coltype(fileptr,ii+1,&DTYPE,&repete,&width,&status);
[839]	679	if( status ) printerror( status,"erreur lecture type de colonne");
[903]	680	rept = repete;
	681	noms.push_back(string(ttype[ii]));
[839]	682	switch (DTYPE)
	683	{
	684	case TDOUBLE :
[903]	685	types.push_back('D');
[839]	686	break;
	687	case TFLOAT :
[903]	688	types.push_back('E');
[839]	689	break;
	690	case TLONG :
[903]	691	types.push_back('I');
[839]	692	break;
	693	case TINT :
[903]	694	types.push_back('I');
[839]	695	break;
	696	case TSHORT :
[903]	697	types.push_back('I');
[839]	698	break;
	699	case TSTRING :
[903]	700	types.push_back('S');
	701	taille_des_chaines.push_back(width);
[839]	702	rept/=width;
	703	break;
	704	default :
	705	cout << " field " << ii+1 << " DTYPE= " << DTYPE << endl;
	706	throw IOExc("FitsFile:: unknown type of field");
	707	}
[903]	708	repeat.push_back(rept);
[839]	709	}
[903]	710	}
[839]	711
	712
	713
[971]	714	void FitsFile::makeHeaderBntblOnFits( char* fieldType, char** Noms, int nentries, int tfields, DVList &dvl, char* extname, vector<int> taille_des_chaines)
[839]	715	{
	716	int status = 0;
	717	long nrows;
	718	if (strlen(fieldType) != tfields)
	719	{
	720	cout << " nombre de champs :" << tfields << "nombre de types: " << strlen(fieldType) << endl;
	721	throw ParmError("FitsFile:: fields and types don't match");
	722
	723	}
	724	char ** ttype= new char*[tfields];
	725	char ** tform= new char*[tfields];
	726	char largeur[FLEN_VALUE];
	727	int noColString=0;
	728
	729
[971]	730	int k;
	731	for (k=0; k<tfields;k++)
[839]	732	{
	733	char format[FLEN_VALUE];
	734
	735	if(nentries < 1024)
	736	{
	737	nrows= nentries;
	738	if (fieldType[k] == 'A')
	739	{
	740	sprintf(largeur,"%d",taille_des_chaines[noColString++]);
	741	strcpy(format,largeur);
	742	}
	743	else strcpy(format,"1");
	744	}
	745	else
	746	{
	747	nrows = nentries/1024;
	748	if(nentries%1024 != 0) nrows++;
	749	if (fieldType[k] == 'A')
	750	{
	751	char largaux[FLEN_VALUE];
	752	sprintf(largeur,"%d",taille_des_chaines[noColString]);
	753	sprintf(largaux,"%d",1024*taille_des_chaines[noColString]);
	754	noColString++;
	755	strcpy(format, largaux);
	756	}
	757	else strcpy(format,"1024");
	758	}
	759	strncat(format,&fieldType[k],1);
	760	if (fieldType[k] == 'A')
	761	{
	762	strcat(format,largeur);
	763	}
	764	ttype[k]= new char[FLEN_VALUE];
	765	strcpy(ttype[k],Noms[k]);
	766	tform[k]= new char[FLEN_VALUE];
	767	strcpy(tform[k],format);
	768	}
	769	// value of the EXTNAME keyword
	770	char extn[FLEN_VALUE];
	771	strncpy(extn,extname,FLEN_VALUE);
	772
	773	// create a new empty binary table onto the FITS file
	774	// physical units if they exist, are defined in the DVList object
	775	// so the NULL pointer is given for the tunit parameters.
	776	nrows=0;
	777	fits_create_tbl(fptr_,BINARY_TBL,nrows,tfields,ttype,tform,
	778	NULL,extn,&status);
	779	if( status ) printerror( status );
	780
[971]	781	hdunum_++;
	782	int ii;
	783	for(ii = 0; ii < tfields; ii++)
[839]	784	{
	785	delete [] ttype[ii];
	786	delete [] tform[ii];
	787	}
	788	delete [] ttype;
	789	delete [] tform;
	790	//
	791	// write supplementary keywords
	792	//
	793	// get names and values from the join DVList object
[867]	794	// dvl.Print();
[971]	795	fits_write_comment(fptr_,"--------------------------------------", &status);
[839]	796	DVList::ValList::const_iterator it;
	797	for(it = dvl.Begin(); it != dvl.End(); it++)
	798	{
	799	char keytype= (*it).second.elval.typ;
	800	char keyname[10];
	801	strncpy(keyname,(*it).first.substr(0,64).c_str(),10);
	802	char comment[FLEN_COMMENT];
	803	switch (keytype)
	804	{
	805	case 'I' :
	806	{
	807	int ival=(*it).second.elval.mtv.iv;
[971]	808	strncpy(comment,(*it).second.elcomm.c_str(),FLEN_COMMENT );
[839]	809	fits_write_key(fptr_,TINT,keyname,&ival,comment,&status);
	810	break;
	811	}
	812	case 'D' :
	813	{
	814	double dval=(*it).second.elval.mtv.dv;
[971]	815	strncpy(comment,(*it).second.elcomm.c_str(),FLEN_COMMENT );
[839]	816	fits_write_key(fptr_,TDOUBLE,keyname,&dval,comment,&status);
	817	break;
	818	}
	819	case 'S' :
	820	{
	821	char strval[128];
	822	strncpy(strval,(*it).second.elval.mtv.strv,127);
[971]	823	strncpy(comment,(*it).second.elcomm.c_str(),FLEN_COMMENT );
[839]	824	fits_write_key(fptr_,TSTRING,keyname,&strval,comment,&status);
	825	break;
	826	}
	827	}
	828	if( status ) printerror( status,"fitsfile: probleme ecriture mot-cle du dvlist" );
	829	}
[971]	830	fits_write_comment(fptr_,"--------------------------------------", &status);
[839]	831
	832	}
	833
	834	void FitsFile::putColToFits(int nocol, int nentries, double* donnees) const
	835	{
	836	int status = 0;
[971]	837	int hdutype;
[839]	838	fits_movabs_hdu(fptr_,hdunum_,&hdutype,&status);
	839	if( status ) printerror(status,"putColToFits: le movabs a foire");
	840	fits_get_hdu_type(fptr_, &hdutype, &status);
[867]	841	if(hdutype != ASCII_TBL && hdutype != BINARY_TBL)
	842	{
	843	cout << " hdunum= " << hdunum_ << " hdutype= " << hdutype << endl;
	844	throw IOExc("FitsFile::putColToFits, this HDU is not an ASCII table nor a binary table");
	845	}
[839]	846	int code;
	847	long repeat, width;
	848	fits_get_coltype(fptr_, nocol+1, &code, &repeat,&width, &status);
	849	if( code != TDOUBLE)
	850	{
	851	cout << " WARNING : types don't match (putColToFits) : on fits file= " << code << " to be written= DOUBLE " << endl;
	852	}
	853	fits_write_col(fptr_,TDOUBLE,nocol+1,1,1,nentries, donnees ,&status);
	854	if( status ) printerror( status,"erreur ecriture du fichier fits" );
	855	}
	856	void FitsFile::putColToFits(int nocol, int nentries, float* donnees) const
	857	{
	858	int status = 0;
	859	int hdutype;
	860	fits_movabs_hdu(fptr_,hdunum_,&hdutype,&status);
	861	if( status ) printerror(status,"putColToFits: le movabs a foire");
	862	fits_get_hdu_type(fptr_, &hdutype, &status);
	863	if(hdutype != ASCII_TBL && hdutype != BINARY_TBL)
	864	{
	865	cout << " hdunum= " << hdunum_ << " hdutype= " << hdutype << endl;
	866	throw IOExc("FitsFile::putColToFits, this HDU is not an ASCII table nor a binary table");
	867	}
	868	if(hdutype == ASCII_TBL && nocol>0)
	869	{
	870	throw IOExc("FitsFile::putColToFits, this HDU is an ASCII table, nocol>0 forbidden");
	871	}
	872	int code;
	873	long repeat, width;
	874	fits_get_coltype(fptr_, nocol+1, &code, &repeat,&width, &status);
	875	if( code != TFLOAT)
	876	{
	877	cout << " WARNING : types don't match (putColToFits) : on fits file= " << code << " (FITS code), to be written= FLOAT " << endl;
	878	}
	879	fits_write_col(fptr_,TFLOAT,nocol+1,1,1,nentries, donnees ,&status);
	880	if( status ) printerror( status,"erreur ecriture du fichier fits" );
	881	}
	882	void FitsFile::putColToFits(int nocol, int nentries, int* donnees) const
	883	{
	884	int status = 0;
	885	int hdutype;
	886	fits_movabs_hdu(fptr_,hdunum_,&hdutype,&status);
	887	if( status ) printerror(status,"putColToFits: le movabs a foire");
	888	fits_get_hdu_type(fptr_, &hdutype, &status);
	889	if(hdutype != ASCII_TBL && hdutype != BINARY_TBL)
	890	{
	891	cout << " hdunum= " << hdunum_ << " hdutype= " << hdutype << endl;
	892	throw IOExc("FitsFile::putColToFits, this HDU is not an ASCII table nor a binary table");
	893	}
	894	if(hdutype == ASCII_TBL && nocol>0)
	895	{
	896	throw IOExc("FitsFile::putColToFits, this HDU is an ASCII table, nocol>0 forbidden");
	897	}
	898	int code;
	899	long repeat, width;
	900	fits_get_coltype(fptr_, nocol+1, &code, &repeat,&width, &status);
	901	if( code != TLONG && code != TINT && code != TSHORT )
	902	{
[971]	903	cout << " WARNING : types don't match (putColToFits) : on fits file= " << code << " (FITS code), to be written= INT " << endl;
[839]	904	}
	905	fits_write_col(fptr_,TINT,nocol+1,1,1,nentries, donnees ,&status);
[971]	906	if( status ) printerror( status," ecriture du fichier fits" );
[839]	907	}
	908	void FitsFile::putColToFits(int nocol, int nentries, char** donnees) const
	909	{
	910	int status = 0;
	911	int hdutype;
	912	fits_movabs_hdu(fptr_,hdunum_,&hdutype,&status);
	913	if( status ) printerror(status,"putColToFits: le movabs a foire");
	914	fits_get_hdu_type(fptr_, &hdutype, &status);
	915	if(hdutype != ASCII_TBL && hdutype != BINARY_TBL)
	916	{
	917	cout << " hdunum= " << hdunum_ << " hdutype= " << hdutype << endl;
	918	throw IOExc("FitsFile::putColToFits, this HDU is not an ASCII table nor a binary table");
	919	}
	920	if(hdutype == ASCII_TBL && nocol>0)
	921	{
	922	throw IOExc("FitsFile::putColToFits, this HDU is an ASCII table, nocol>0 forbidden");
	923	}
	924	int code;
	925	long repeat, width;
	926	fits_get_coltype(fptr_, nocol+1, &code, &repeat,&width, &status);
	927	if( code != TSTRING)
	928	{
	929	cout << " WARNING : types don't match (putColToFits) : on fits file= " << code << " (FITS code), to be written= char** " << endl;
	930	}
	931	fits_write_col(fptr_,TSTRING,nocol+1,1,1,nentries, donnees ,&status);
	932	if( status ) printerror( status,"erreur ecriture du fichier fits" );
	933	}
	934
	935
	936
	937
	938	void FitsFile::readheader()
	939	//*************************************/
	940	//* Print out all the header keywords */
	941	//*************************************/
	942	{
	943	// standard string lengths defined in fitsioc.h
	944	char card[FLEN_CARD];
	945
	946	int status = 0;
	947
	948	// get the number of keywords
	949	int nkeys, keypos;
	950	if( fits_get_hdrpos(fptr_,&nkeys,&keypos,&status) )
	951	printerror( status );
	952
	953	cout << " Header listing for HDU : " << hdunum_ << endl;
[971]	954	int jj;
	955	for(jj = 1; jj <= nkeys; jj++)
[839]	956	{
	957	if( fits_read_record(fptr_,jj,card,&status) )
	958	printerror( status );
	959
	960	// print the keyword card
	961	cout << card << endl;
	962	}
	963	cout << "END" << endl;
	964	}
	965
	966
	967	void FitsFile::writeSignatureOnFits() const
	968	{
	969	int status = 0;
	970	char keyname[LEN_KEYWORD];
	971	char strval[FLEN_VALUE];
	972	char comment[FLEN_COMMENT];
[971]	973	strncpy(keyname, "CREATOR", LEN_KEYWORD);
	974	keyname[LEN_KEYWORD-1] = '\0';
	975	strcpy(strval, "SOPHYA");
	976	strcpy(comment," SOPHYA Package - FITSIOServer ");
	977	fits_write_key(fptr_, TSTRING, keyname, &strval, comment, &status);
	978	if( status ) printerror( status );
	979
	980	fits_write_comment(fptr_,"..............................................", &status);
	981	fits_write_comment(fptr_, " SOPHYA package - FITSIOSever ", &status);
	982	fits_write_comment(fptr_, " (C) LAL/IN2P3-CNRS Orsay, FRANCE 2000", &status);
	983	fits_write_comment(fptr_, " (C) DAPNIA/CEA Saclay, FRANCE 2000", &status);
	984	fits_write_comment(fptr_,"..............................................", &status);
	985	if( status ) printerror( status );
[839]	986	}
	987
[903]	988
	989
	990
	991	void FitsFile::printerror(int &status)
[839]	992	//*****************************************************/
	993	//* Print out cfitsio error messages and exit program */
	994	//*****************************************************/
	995	{
	996	if( status )
	997	{
	998	fits_report_error(stderr,status);
	999	throw IOExc("FitsFile:: error FITSIO status");
	1000	}
	1001	return;
	1002	}
	1003
[903]	1004	void FitsFile::printerror(int& status, char* texte)
[839]	1005	//*****************************************************/
	1006	//* Print out cfitsio error messages and exit program */
	1007	//*****************************************************/
	1008	{
	1009	// print out cfitsio error messages and exit program
	1010	// print error report
	1011	fits_report_error(stderr, status);
	1012	cout << " erreur:: " << texte << endl;
	1013	throw IOExc("FitsFile:: error FITSIO status");
	1014	}

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