[839] | 1 | #ifndef FITSFILE_H
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| 2 | #define FITSFILE_H
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| 3 |
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| 4 | #include "ndatablock.h"
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| 5 | #include "dvlist.h"
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| 6 | #include "FitsIO/fitsio.h"
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| 7 |
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| 8 | #define OPENFILE 0
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| 9 | #define CREATEFILE 1
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| 10 | #define LEN_KEYWORD 9
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| 11 |
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[1218] | 12 | // classes for saving/loading SOPHYA objects to/from FITS files...
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| 13 | // Guy le Meur (september 2000)
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[875] | 14 |
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[1209] | 15 |
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[1218] | 16 | namespace SOPHYA {
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[1209] | 17 |
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[1218] | 18 | struct BnTblLine;
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| 19 | class FitsFile;
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| 20 | class FitsInFile;
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| 21 | class FitsOutFile;
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| 22 |
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[1193] | 23 |
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[903] | 24 | //
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[1136] | 25 | //! Class for managing Interface for SOPHYA objects to FITS Format Files (uses cfitsio lib)
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[875] | 26 |
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[1218] | 27 | class FitsIOHandler {
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[903] | 28 |
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| 29 |
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[1218] | 30 | public:
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[903] | 31 |
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[1218] | 32 | virtual ~FitsIOHandler() {}
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| 33 | void Read(char flnm[],int hdunum= 0);
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| 34 | void Write(char flnm[]) ;
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| 35 | void Read(FitsInFile& ifts, int hdunum=0);
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| 36 | void Write(FitsOutFile& ofts) ;
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[903] | 37 |
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[839] | 38 |
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[1218] | 39 | protected:
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| 40 |
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| 41 | virtual void ReadFromFits(FitsInFile& is)=0;
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| 42 | virtual void WriteToFits(FitsOutFile& os) =0;
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| 43 |
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| 44 | friend class FitsInFile;
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| 45 | friend class FitsOutFile;
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[1136] | 46 | };
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| 47 |
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| 48 |
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[1218] | 49 | //! Class (virtual) for managing FITS format files
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| 50 | class FitsFile {
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[1136] | 51 |
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[1218] | 52 | public:
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[1136] | 53 |
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[1231] | 54 | enum WriteMode {append, clear, unknown};
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| 55 |
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| 56 | enum FitsExtensionType {
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| 57 | FitsExtensionType_IMAGE,
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| 58 | FitsExtensionType_ASCII_TBL,
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| 59 | FitsExtensionType_BINARY_TBL
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| 60 | };
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| 61 | enum FitsDataType {
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[1300] | 62 | FitsDataType_NULL,
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[1231] | 63 | FitsDataType_double,
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| 64 | FitsDataType_float,
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| 65 | FitsDataType_int,
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| 66 | FitsDataType_char,
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[1300] | 67 | FitsDataType_ASCII,
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[1231] | 68 | };
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| 69 |
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[1218] | 70 | FitsFile() { InitNull(); };
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| 71 | virtual ~FitsFile();
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| 72 | static string GetErrStatus(int status);
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| 73 | inline int statusF() const { return fits_status_;}
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[1234] | 74 | inline void firstImageOnPrimaryHeader(bool choice) {imageOnPrimary_=choice;}
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[1300] | 75 | inline int currentHeaderIndex() {return hdunum_;}
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[1136] | 76 |
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| 77 |
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[1218] | 78 | protected:
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[1136] | 79 |
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[1218] | 80 | void ResetStatus(int& status) ;
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[1136] | 81 | static void printerror(int&) ;
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| 82 | static void printerror(int&,char* texte) ;
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[1234] | 83 | inline void InitNull() {fptr_ = NULL; hdutype_= 0; hdunum_ = 0;
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| 84 | fits_status_ = 0; imageOnPrimary_ = true;}
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[1218] | 85 | fitsfile *fptr_; /**< pointer to the FITS file, defined in fitsio.h */
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| 86 | int hdutype_; /**< image or bintable ? */
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| 87 | int hdunum_; /**< index of header to be read/written */
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| 88 | int fits_status_; /**< last status returned by fitsio library. updated only by several methods */
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[1234] | 89 | bool imageOnPrimary_;
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[1136] | 90 |
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[1218] | 91 | };
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[1136] | 92 |
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[1218] | 93 | //! Class for saving SOPHYA objects on FITS Format Files (uses cfitsio lib)
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[1136] | 94 |
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| 95 | class FitsInFile : public FitsFile {
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| 96 |
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| 97 | public:
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| 98 | FitsInFile();
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[1231] | 99 | FitsInFile(string const & flnm);
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| 100 | FitsInFile(const char * flnm);
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[1143] | 101 | ~FitsInFile() { ; };
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[1136] | 102 |
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[1218] | 103 | static int NbBlocks(char flnm[]);
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[1231] | 104 | static void GetBlockType(char flnm[], int hdunum, FitsExtensionType& typeOfExtension, int& naxis, vector<int>& naxisn, FitsDataType& dataType, DVList& dvl );
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[1300] | 105 | void ReadHeader(int hdunum);
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[1218] | 106 |
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| 107 | /*! \return a reference on a DVList containing the keywords from FITS file */
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| 108 | inline const DVList& DVListFromFits() const { return dvl_;}
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[1136] | 109 |
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[1218] | 110 | DVList DVListFromPrimaryHeader() const;
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| 111 | void moveToFollowingHeader();
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[1047] | 112 |
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[1136] | 113 |
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| 114 |
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| 115 |
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| 116 | //////////////////////////////////////////////////////////
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| 117 | /////// methods for managing extensions ////////////////
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| 118 | //////////////////////////////////////////////////////////
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| 119 |
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| 120 |
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[1047] | 121 | /////////////////////////////////////////////////////////////
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[1136] | 122 | // methods for managing FITS IMAGE extension
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| 123 | ///////////////////////////////////////////////////
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[1047] | 124 |
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| 125 |
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[1218] | 126 |
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| 127 | /*! \return true if the current header corresponds to a FITS image extension */
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[1047] | 128 | inline bool IsFitsImage() const { return (hdutype_ == IMAGE_HDU);}
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| 129 |
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[1136] | 130 |
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| 131 |
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[1218] | 132 | /*! \return number of dimensions of an image extension : NAXIS parameter (in FITS notations) */
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[861] | 133 | inline int nbDimOfImage() const {return naxis_;}
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[1218] | 134 |
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| 135 | /*! \return a reference on a vector containing sizes of the NAXIS dimensions : NAXIS1, NAXIS2, NAXIS3 etc. */
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[1047] | 136 | inline const vector<int>& dimOfImageAxes() const { return naxisn_;}
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[1218] | 137 |
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| 138 |
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| 139 | /*! \return total number of data in the current IMAGE extension */
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[839] | 140 | inline int nbOfImageData() const { return nbData_; }
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[903] | 141 |
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[1300] | 142 | /*! \return data type of the current IMAGE extension */
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| 143 | inline FitsFile::FitsDataType ImageType() const {return imageDataType_;}
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[903] | 144 |
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[1047] | 145 |
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[1136] | 146 | //////////////////////////////////////////////////////////////////////////
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| 147 | // methods for managing FITS BINARY TABLE or ASCII TABLE extension
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| 148 | ////////////////////////////////////////////////////////////////////////
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[1047] | 149 |
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| 150 |
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| 151 |
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| 152 |
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[1218] | 153 | /*! \return true if the current header corresponds to a FITS ASCII or BINTABLE extension */
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[1136] | 154 | inline bool IsFitsTable() const {return (hdutype_ == ASCII_TBL || hdutype_ == BINARY_TBL);}
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[1047] | 155 |
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| 156 |
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[1218] | 157 | static void GetBinTabParameters(fitsfile* fileptr, int& nbcols, int& nrows,
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[1136] | 158 | vector<int>& repeat,
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| 159 | vector<string>& noms,
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[1300] | 160 | vector<FitsDataType>& types,
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[1136] | 161 | vector<int>& taille_des_chaines);
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[1300] | 162 | FitsDataType ColTypeFromFits(int nocol) const;
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[1218] | 163 | string ColNameFromFits(int nocol) const;
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| 164 | int ColStringLengthFromFits(int nocol) const;
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| 165 | void GetBinTabLine(int NoLine, double* ddata, float* fdata, int* idata, char
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[1047] | 166 | ** cdata) ;
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[1218] | 167 | void GetBinTabLine(long NoLine, BnTblLine& ligne) ;
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| 168 | void GetBinTabLine(int NoLine, float* fdata) ;
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| 169 | void GetBinTabFCol(double* valeurs, int nentries, int NoCol) const;
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| 170 | void GetBinTabFCol(float* valeurs, int nentries, int NoCol) const;
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| 171 | void GetBinTabFCol(int* valeurs, int nentries, int NoCol) const;
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| 172 | void GetBinTabFCol(char** valeurs,int nentries, int NoCol) const;
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[1047] | 173 |
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[1136] | 174 | /////////////////////////////////////////////////////////////
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| 175 | // methods for managing any type of FITS extension
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| 176 | ////////////////////////////////////////////////////////
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[1045] | 177 |
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[1136] | 178 | int NbColsFromFits() const;
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| 179 | int NentriesFromFits(int nocol) const;
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[1045] | 180 |
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| 181 |
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[1047] | 182 | void GetSingleColumn(double* map, int nentries) const;
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[903] | 183 |
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[1047] | 184 | void GetSingleColumn(float* map, int nentries) const;
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[839] | 185 |
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[1047] | 186 | void GetSingleColumn(int* map, int nentries) const;
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| 187 |
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[1136] | 188 | private :
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[1047] | 189 |
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[1136] | 190 | void InitNull();
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[1234] | 191 | void getHeader();
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[1136] | 192 | static void KeywordsIntoDVList(fitsfile* fileptr, DVList& dvl, int hdunum);
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[1300] | 193 | static void GetImageParameters (fitsfile* fileptr,FitsDataType& dataType,int& naxis,vector<int>& naxisn);
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[839] | 194 |
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[1300] | 195 | FitsDataType imageDataType_; /**< fits-Image parameter (bitpix)*/
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[1218] | 196 | int naxis_; /**< fits-Image parameter */
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| 197 | vector<int> naxisn_; /**< fits-Image parameters : sizes of dimensions */
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| 198 | int nbData_; /*< fits-Image parameter: number of data */
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| 199 | int nrows_; /**< Bintable parameter */
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| 200 | vector<int> repeat_; /**< Bintable parameter */
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| 201 | int nbcols_; /**< Bintable parameter */
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| 202 | vector<string> noms_; /**< Bintable parameter: column names */
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[1300] | 203 | vector<FitsDataType> types_; /**< Bintable parameters: types of columns (D: double, E: float, I: integers, A: char*) */
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[1218] | 204 | DVList dvl_; /**< DVList for transferring keywords */
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| 205 | vector<int> taille_des_chaines_; /**< Bintable parameters: length of the char* variables */
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[839] | 206 |
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[1136] | 207 | };
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[1047] | 208 |
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[1218] | 209 | //! Class for loading SOPHYA objects from FITS Format Files (uses cfitsio lib)
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[875] | 210 |
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[1136] | 211 | class FitsOutFile : public FitsFile {
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[875] | 212 |
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[1136] | 213 | public:
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[1193] | 214 |
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[1136] | 215 | FitsOutFile();
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[1231] | 216 | FitsOutFile(string const & flnm, WriteMode wrm = unknown );
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| 217 | FitsOutFile(const char * flnm, WriteMode wrm = unknown );
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[1246] | 218 | ~FitsOutFile() { if (dvlToPrimary_ != NULL) delete dvlToPrimary_;};
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| 219 | inline void InitNull() {dvlToPrimary_ = NULL;}
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[1136] | 220 |
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| 221 | //////////////////////////////////////////////////////////
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| 222 | /////// methods for managing extensions ////////////////
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| 223 | //////////////////////////////////////////////////////////
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| 224 |
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| 225 |
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| 226 |
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| 227 | /////////////////////////////////////////////////////////////
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| 228 | // methods for managing FITS IMAGE extension
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| 229 | ///////////////////////////////////////////////////
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| 230 |
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| 231 |
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[1221] | 232 | void makeHeaderImageOnFits(char type, int nbdim, int* naxisn, DVList* dvl) ;
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[1218] | 233 | void PutImageToFits( int nbData, double* map) const;
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| 234 | void PutImageToFits(int nbData, float* map ) const;
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| 235 | void PutImageToFits(int nbData, int* map) const;
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[1136] | 236 |
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| 237 |
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[1143] | 238 |
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[1136] | 239 | //////////////////////////////////////////////////////////////////////////
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| 240 | // methods for managing FITS BINARY TABLE or ASCII TABLE extension
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| 241 | ////////////////////////////////////////////////////////////////////////
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| 242 |
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| 243 |
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| 244 |
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[1221] | 245 | void makeHeaderBntblOnFits ( string fieldType, vector<string> Noms, int nentries, int tfields, DVList* dvl, string extname, vector<int> taille_des_chaines) ;
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[1218] | 246 | void PutColToFits(int nocol, int nentries, double* donnees) const;
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| 247 | void PutColToFits(int nocol, int nentries, float* donnees) const;
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| 248 | void PutColToFits(int nocol, int nentries, int* donnees) const;
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| 249 | void PutColToFits(int nocol, int nentries, char** donnees) const;
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| 250 | void PutBinTabLine(long NoLine, BnTblLine& ligne) const;
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[1136] | 251 |
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| 252 |
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[1143] | 253 | /////////////////////////////////////////////////////////////
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| 254 | // methods for managing any type of FITS extension
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| 255 | ////////////////////////////////////////////////////////
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| 256 |
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| 257 |
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[1246] | 258 | void DVListIntoPrimaryHeader(DVList& dvl) ;
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[1143] | 259 |
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| 260 |
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| 261 |
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[1136] | 262 | private :
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| 263 |
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[1231] | 264 | void openoutputfitsfile(const char * flnm, WriteMode wrm);
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[1246] | 265 | void writeSignatureOnFits(int hdunum) const;
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| 266 | void addKeywordsOfDVList( DVList& dvl) const;
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| 267 | void addDVListOnPrimary();
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[1136] | 268 |
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[1246] | 269 | DVList* dvlToPrimary_; /**< for transferring keywords when creating primary header */
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[1136] | 270 | };
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| 271 |
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[1218] | 272 | struct BnTblLine
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| 273 | {
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| 274 | BnTblLine() {}
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| 275 | void setFormat(int dc, int fc, int ic, int cc, vector<string> names);
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| 276 | bool sameFormat(const BnTblLine& btl) const;
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[1136] | 277 |
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[1218] | 278 | void Print();
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[1136] | 279 |
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[1218] | 280 | vector<double> ddata_;
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| 281 | vector<float> fdata_;
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| 282 | vector<int> idata_;
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| 283 | vector<string> cdata_;
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| 284 | vector<string> ColName_;
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| 285 |
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| 286 | };
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| 287 |
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| 288 |
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[875] | 289 | } // Fin du namespace
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| 290 |
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| 291 |
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[839] | 292 | #endif
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