| [839] | 1 | #ifndef FITSFILE_H | 
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|  | 2 | #define FITSFILE_H | 
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|  | 3 |  | 
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|  | 4 | #include "ndatablock.h" | 
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|  | 5 | #include "dvlist.h" | 
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|  | 6 | #include "FitsIO/fitsio.h" | 
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|  | 7 |  | 
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|  | 8 | #define OPENFILE    0 | 
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|  | 9 | #define CREATEFILE  1 | 
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|  | 10 | #define LEN_KEYWORD 9 | 
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|  | 11 |  | 
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| [1218] | 12 | // classes for saving/loading SOPHYA objects to/from FITS files... | 
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|  | 13 | // Guy le Meur (september 2000) | 
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| [875] | 14 |  | 
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| [1209] | 15 |  | 
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| [1218] | 16 | namespace SOPHYA { | 
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| [1209] | 17 |  | 
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| [1218] | 18 | struct BnTblLine; | 
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|  | 19 | class FitsFile; | 
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|  | 20 | class FitsInFile; | 
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|  | 21 | class FitsOutFile; | 
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| [1193] | 22 |  | 
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| [1353] | 23 |  | 
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|  | 24 |  | 
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|  | 25 | class  FitsKeyword | 
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|  | 26 | { | 
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|  | 27 |  | 
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|  | 28 | public: | 
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|  | 29 |  | 
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|  | 30 | FitsKeyword(); | 
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|  | 31 | FitsKeyword(string comment); | 
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|  | 32 | FitsKeyword(string keyname, string value, string comment); | 
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| [1418] | 33 | FitsKeyword(string keyname, string value, string comment, char type); | 
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| [1353] | 34 | void writeOnFits(fitsfile* ptr); | 
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|  | 35 |  | 
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|  | 36 | void Print(); | 
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|  | 37 |  | 
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|  | 38 | private: | 
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|  | 39 |  | 
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|  | 40 | char datatype_; | 
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|  | 41 | string keyname_; | 
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|  | 42 | double dvalue_; | 
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|  | 43 | int ivalue_; | 
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|  | 44 | string svalue_; | 
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|  | 45 | string comment_; | 
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|  | 46 | }; | 
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|  | 47 |  | 
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|  | 48 |  | 
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|  | 49 |  | 
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| [903] | 50 | // | 
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| [1136] | 51 | //! Class for managing Interface for SOPHYA objects to FITS Format Files (uses cfitsio lib) | 
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| [875] | 52 |  | 
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| [1353] | 53 | class FitsIOHandler { | 
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| [903] | 54 |  | 
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|  | 55 |  | 
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| [1218] | 56 | public: | 
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| [903] | 57 |  | 
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| [1218] | 58 | virtual ~FitsIOHandler() {} | 
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|  | 59 | void   Read(char flnm[],int hdunum= 0); | 
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|  | 60 | void   Write(char flnm[]) ; | 
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|  | 61 | void   Read(FitsInFile& ifts, int hdunum=0); | 
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|  | 62 | void   Write(FitsOutFile& ofts) ; | 
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| [903] | 63 |  | 
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| [839] | 64 |  | 
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| [1218] | 65 | protected: | 
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|  | 66 |  | 
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|  | 67 | virtual void    ReadFromFits(FitsInFile& is)=0; | 
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|  | 68 | virtual void    WriteToFits(FitsOutFile& os) =0; | 
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|  | 69 |  | 
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|  | 70 | friend class FitsInFile; | 
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|  | 71 | friend class FitsOutFile; | 
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| [1136] | 72 | }; | 
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|  | 73 |  | 
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|  | 74 |  | 
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| [1218] | 75 | //! Class (virtual) for managing FITS format files | 
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|  | 76 | class FitsFile { | 
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| [1136] | 77 |  | 
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| [1218] | 78 | public: | 
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| [1136] | 79 |  | 
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| [1231] | 80 | enum WriteMode {append, clear, unknown}; | 
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|  | 81 |  | 
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|  | 82 | enum FitsExtensionType { | 
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| [1334] | 83 | FitsExtensionType_NULL, | 
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| [1231] | 84 | FitsExtensionType_IMAGE, | 
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|  | 85 | FitsExtensionType_ASCII_TBL, | 
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| [1334] | 86 | FitsExtensionType_BINARY_TBL, | 
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|  | 87 | FitsExtensionType_EOF, | 
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|  | 88 | FitsExtensionType_ERROR | 
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| [1231] | 89 | }; | 
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|  | 90 | enum FitsDataType { | 
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| [1300] | 91 | FitsDataType_NULL, | 
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| [1231] | 92 | FitsDataType_double, | 
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|  | 93 | FitsDataType_float, | 
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|  | 94 | FitsDataType_int, | 
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|  | 95 | FitsDataType_char, | 
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| [1359] | 96 | FitsDataType_ASCII, | 
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|  | 97 | FitsDataType_long, | 
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|  | 98 | FitsDataType_byte | 
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| [1231] | 99 | }; | 
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|  | 100 |  | 
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| [1218] | 101 | FitsFile() { InitNull(); }; | 
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|  | 102 | virtual ~FitsFile(); | 
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|  | 103 | static string GetErrStatus(int status); | 
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|  | 104 | inline  int   statusF() const { return fits_status_;} | 
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| [1234] | 105 | inline void firstImageOnPrimaryHeader(bool choice) {imageOnPrimary_=choice;} | 
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| [1300] | 106 | inline int currentHeaderIndex() {return hdunum_;} | 
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| [1136] | 107 |  | 
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|  | 108 |  | 
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| [1218] | 109 | protected: | 
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| [1136] | 110 |  | 
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| [1771] | 111 | void         ResetStatus(int& status) ; | 
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|  | 112 | static  void printerror(int&) ; | 
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|  | 113 | static  void printerror(int&,char* texte) ; | 
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|  | 114 | static  void printerrorAndContinue(int& status, char* texte); | 
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|  | 115 | inline void  InitNull() | 
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|  | 116 | { | 
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|  | 117 | fptr_ = NULL; | 
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|  | 118 | hdutype_= FitsExtensionType_NULL; | 
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|  | 119 | hdunum_ = 0; | 
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|  | 120 | fits_status_ = 0; imageOnPrimary_ = true; | 
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|  | 121 | } | 
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|  | 122 | inline fitsfile* fitsfilePtr() const {return fptr_;} | 
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|  | 123 |  | 
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|  | 124 |  | 
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|  | 125 |  | 
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| [1218] | 126 | fitsfile *fptr_;     /**<  pointer to the FITS file, defined in fitsio.h */ | 
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| [1334] | 127 | FitsExtensionType hdutype_;        /**<  image or bintable ? */ | 
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| [1218] | 128 | int hdunum_;         /**<   index of header to be read/written */ | 
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|  | 129 | int fits_status_;    /**< last status returned by fitsio library. updated only by several methods */ | 
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| [1234] | 130 | bool imageOnPrimary_; | 
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| [1136] | 131 |  | 
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| [1218] | 132 | }; | 
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| [1136] | 133 |  | 
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| [1218] | 134 | //! Class for saving  SOPHYA objects on FITS Format Files (uses cfitsio lib) | 
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| [1136] | 135 |  | 
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|  | 136 | class FitsInFile : public  FitsFile { | 
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|  | 137 |  | 
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|  | 138 | public: | 
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|  | 139 | FitsInFile(); | 
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| [1231] | 140 | FitsInFile(string const & flnm); | 
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|  | 141 | FitsInFile(const char * flnm); | 
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| [1143] | 142 | ~FitsInFile() { ; }; | 
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| [1136] | 143 |  | 
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| [1218] | 144 | static int  NbBlocks(char flnm[]); | 
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| [1334] | 145 | int  NbBlocks(); | 
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| [1231] | 146 | static void GetBlockType(char flnm[], int hdunum, FitsExtensionType& typeOfExtension, int& naxis, vector<int>& naxisn, FitsDataType& dataType, DVList& dvl  ); | 
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| [1353] | 147 |  | 
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|  | 148 | void  ReadHeader(int hdunum); | 
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| [1354] | 149 | bool hasKeyword(int hdunum, string keyw); | 
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|  | 150 | string getStringKeyword(int hdunum, string keyname,int& retStatus); | 
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| [1353] | 151 |  | 
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| [1218] | 152 | /*! \return a reference on a DVList containing the keywords from FITS file */ | 
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|  | 153 | inline const DVList& DVListFromFits() const { return dvl_;} | 
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| [1136] | 154 |  | 
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| [1771] | 155 | void GetKeywordsFromHeader (int hdunum, list<FitsKeyword>& mots_cles) const; | 
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|  | 156 |  | 
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|  | 157 |  | 
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| [1218] | 158 | DVList  DVListFromPrimaryHeader() const; | 
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|  | 159 | void    moveToFollowingHeader(); | 
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| [1047] | 160 |  | 
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| [1136] | 161 |  | 
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|  | 162 |  | 
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|  | 163 |  | 
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|  | 164 | ////////////////////////////////////////////////////////// | 
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|  | 165 | ///////   methods for managing extensions //////////////// | 
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|  | 166 | ////////////////////////////////////////////////////////// | 
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|  | 167 |  | 
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|  | 168 |  | 
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| [1047] | 169 | ///////////////////////////////////////////////////////////// | 
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| [1136] | 170 | //       methods for managing FITS IMAGE extension | 
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|  | 171 | /////////////////////////////////////////////////// | 
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| [1047] | 172 |  | 
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|  | 173 |  | 
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| [1218] | 174 |  | 
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|  | 175 | /*! \return true if the current header  corresponds to a FITS image extension */ | 
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| [1334] | 176 | inline bool IsFitsImage() const { return (hdutype_ == FitsExtensionType_IMAGE);} | 
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| [1047] | 177 |  | 
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| [1136] | 178 |  | 
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|  | 179 |  | 
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| [1218] | 180 | /*! \return number of dimensions of an image extension : NAXIS parameter (in FITS notations)   */ | 
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| [861] | 181 | inline int nbDimOfImage() const {return naxis_;} | 
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| [1218] | 182 |  | 
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|  | 183 | /*! \return a reference on a vector containing sizes of the NAXIS dimensions : NAXIS1, NAXIS2, NAXIS3 etc.  */ | 
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| [1047] | 184 | inline const vector<int>& dimOfImageAxes() const { return naxisn_;} | 
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| [1218] | 185 |  | 
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|  | 186 |  | 
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|  | 187 | /*! \return total number of data in the current IMAGE extension */ | 
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| [839] | 188 | inline int nbOfImageData() const { return nbData_; } | 
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| [903] | 189 |  | 
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| [1300] | 190 | /*! \return data type of the current IMAGE extension */ | 
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|  | 191 | inline FitsFile::FitsDataType ImageType() const {return imageDataType_;} | 
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| [903] | 192 |  | 
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| [1047] | 193 |  | 
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| [1771] | 194 |  | 
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| [1136] | 195 | ////////////////////////////////////////////////////////////////////////// | 
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|  | 196 | //       methods for managing FITS BINARY TABLE or ASCII TABLE extension | 
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|  | 197 | //////////////////////////////////////////////////////////////////////// | 
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| [1047] | 198 |  | 
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|  | 199 |  | 
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|  | 200 |  | 
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|  | 201 |  | 
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| [1218] | 202 | /*! \return true if the current header  corresponds to a FITS ASCII or BINTABLE extension */ | 
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| [1334] | 203 | inline bool IsFitsTable() const {return (hdutype_ == FitsExtensionType_ASCII_TBL || hdutype_ == FitsExtensionType_BINARY_TBL);} | 
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| [1047] | 204 |  | 
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|  | 205 |  | 
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| [1353] | 206 |  | 
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|  | 207 |  | 
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| [1218] | 208 | static  void GetBinTabParameters(fitsfile* fileptr, int& nbcols, int& nrows, | 
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| [1136] | 209 | vector<int>& repeat, | 
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|  | 210 | vector<string>& noms, | 
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| [1300] | 211 | vector<FitsDataType>& types, | 
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| [1136] | 212 | vector<int>&  taille_des_chaines); | 
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| [1300] | 213 | FitsDataType   ColTypeFromFits(int nocol) const; | 
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| [1218] | 214 | string ColNameFromFits(int nocol) const; | 
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|  | 215 | int    ColStringLengthFromFits(int nocol) const; | 
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|  | 216 | void   GetBinTabLine(int NoLine, double* ddata, float* fdata, int* idata, char | 
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| [1047] | 217 | ** cdata) ; | 
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| [1218] | 218 | void   GetBinTabLine(long NoLine, BnTblLine& ligne) ; | 
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|  | 219 | void   GetBinTabLine(int NoLine, float* fdata) ; | 
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| [1352] | 220 | void   GetBinTabFCol(r_8* valeurs, int nentries, int NoCol) const; | 
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|  | 221 | void   GetBinTabFCol(r_4* valeurs, int nentries, int NoCol) const; | 
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|  | 222 | void   GetBinTabFCol(int_4* valeurs, int nentries,  int NoCol) const; | 
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| [1218] | 223 | void   GetBinTabFCol(char** valeurs,int nentries, int NoCol) const; | 
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| [1047] | 224 |  | 
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| [1136] | 225 | ///////////////////////////////////////////////////////////// | 
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|  | 226 | //       methods for managing any type of FITS extension | 
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|  | 227 | //////////////////////////////////////////////////////// | 
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| [1045] | 228 |  | 
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| [1334] | 229 | /*! \return true if the current header  is beyond the maximum */ | 
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|  | 230 | inline bool IsFitsEOF() const {return (hdutype_ == FitsExtensionType_EOF);} | 
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|  | 231 | /*! \return true if the current header  is incorrect, following a cfitsio, movavs error */ | 
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|  | 232 | inline bool IsFitsERROR() const {return (hdutype_ == FitsExtensionType_ERROR);} | 
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|  | 233 |  | 
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| [1136] | 234 | int     NbColsFromFits() const; | 
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|  | 235 | int     NentriesFromFits(int nocol) const; | 
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| [1045] | 236 |  | 
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|  | 237 |  | 
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| [1352] | 238 | void    GetSingleColumn(r_8* map, int nentries) const; | 
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| [903] | 239 |  | 
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| [1352] | 240 | void    GetSingleColumn(r_4*  map, int nentries) const; | 
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| [839] | 241 |  | 
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| [1352] | 242 | void    GetSingleColumn(int_4* map, int nentries) const; | 
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| [1047] | 243 |  | 
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| [1353] | 244 |  | 
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|  | 245 |  | 
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|  | 246 |  | 
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|  | 247 |  | 
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| [1136] | 248 | private : | 
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| [1047] | 249 |  | 
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| [1136] | 250 | void InitNull(); | 
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| [1978] | 251 |  | 
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| [1771] | 252 | void getHeaderWithSophyaObject(); | 
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| [1136] | 253 | static void KeywordsIntoDVList(fitsfile* fileptr, DVList& dvl, int hdunum); | 
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| [1300] | 254 | static  void GetImageParameters (fitsfile* fileptr,FitsDataType& dataType,int& naxis,vector<int>& naxisn); | 
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| [839] | 255 |  | 
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| [1300] | 256 | FitsDataType imageDataType_;          /**< fits-Image parameter (bitpix)*/ | 
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| [1218] | 257 | int naxis_;           /**< fits-Image parameter */ | 
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|  | 258 | vector<int> naxisn_;  /**< fits-Image parameters : sizes of dimensions */ | 
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|  | 259 | int nbData_;          /*< fits-Image parameter: number of data */ | 
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|  | 260 | int nrows_;           /**< Bintable parameter */ | 
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|  | 261 | vector<int> repeat_;  /**< Bintable parameter */ | 
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|  | 262 | int nbcols_;          /**< Bintable parameter */ | 
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|  | 263 | vector<string> noms_; /**< Bintable parameter: column names */ | 
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| [1300] | 264 | vector<FitsDataType> types_;  /**< Bintable parameters: types of columns (D: double, E: float, I: integers,  A: char*) */ | 
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| [1218] | 265 | DVList dvl_;          /**< DVList for transferring keywords */ | 
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|  | 266 | vector<int>  taille_des_chaines_; /**< Bintable parameters:   length of the char* variables */ | 
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| [839] | 267 |  | 
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| [1978] | 268 | double dnull_; | 
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|  | 269 | float fnull_; | 
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|  | 270 | int inull_; | 
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|  | 271 | string cnull_; | 
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|  | 272 |  | 
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|  | 273 |  | 
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|  | 274 |  | 
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| [1136] | 275 | }; | 
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| [1047] | 276 |  | 
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| [1218] | 277 | //! Class for loading  SOPHYA objects from FITS Format Files (uses cfitsio lib) | 
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| [875] | 278 |  | 
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| [1136] | 279 | class FitsOutFile : public  FitsFile { | 
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| [875] | 280 |  | 
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| [1136] | 281 | public: | 
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| [1193] | 282 |  | 
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| [1136] | 283 | FitsOutFile(); | 
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| [1231] | 284 | FitsOutFile(string const & flnm, WriteMode wrm = unknown ); | 
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|  | 285 | FitsOutFile(const char * flnm, WriteMode wrm = unknown ); | 
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| [1246] | 286 | ~FitsOutFile() { if (dvlToPrimary_ != NULL) delete dvlToPrimary_;}; | 
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|  | 287 | inline void InitNull() {dvlToPrimary_ = NULL;} | 
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| [1136] | 288 |  | 
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|  | 289 | ////////////////////////////////////////////////////////// | 
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|  | 290 | ///////   methods for managing extensions //////////////// | 
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|  | 291 | ////////////////////////////////////////////////////////// | 
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|  | 292 |  | 
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|  | 293 |  | 
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|  | 294 |  | 
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|  | 295 | ///////////////////////////////////////////////////////////// | 
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|  | 296 | //       methods for managing FITS IMAGE extension | 
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|  | 297 | /////////////////////////////////////////////////// | 
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|  | 298 |  | 
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|  | 299 |  | 
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| [1221] | 300 | void makeHeaderImageOnFits(char type, int nbdim, int* naxisn, DVList* dvl) ; | 
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| [1352] | 301 | void PutImageToFits( int nbData, r_8* map) const; | 
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|  | 302 | void PutImageToFits(int nbData, r_4* map ) const; | 
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|  | 303 | void PutImageToFits(int nbData, int_4* map) const; | 
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| [1136] | 304 |  | 
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|  | 305 |  | 
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| [1143] | 306 |  | 
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| [1136] | 307 | ////////////////////////////////////////////////////////////////////////// | 
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|  | 308 | //       methods for managing FITS BINARY TABLE or ASCII TABLE extension | 
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|  | 309 | //////////////////////////////////////////////////////////////////////// | 
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|  | 310 |  | 
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|  | 311 |  | 
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|  | 312 |  | 
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| [1221] | 313 | void makeHeaderBntblOnFits ( string fieldType, vector<string> Noms, int nentries, int tfields, DVList* dvl, string extname,  vector<int> taille_des_chaines) ; | 
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| [1353] | 314 | void appendInputHeader(FitsInFile& headerin, int hdunum); | 
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|  | 315 | void writeAppendedHeaderOnFits(); | 
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|  | 316 | void PrintHeaderToBeAppended(); | 
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|  | 317 | void insertCommentLineOnHeader(string comment); | 
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| [1418] | 318 | void insertKeywordOnHeader(string keyname, double value, string comment); | 
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|  | 319 | void insertKeywordOnHeader(string keyname, int value, string comment); | 
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|  | 320 | void insertKeywordOnHeader(string keyname, string value, string comment); | 
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| [1352] | 321 | void PutColToFits(int nocol, int nentries, r_8* donnees) const; | 
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|  | 322 | void PutColToFits(int nocol, int nentries, r_4* donnees) const; | 
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|  | 323 | void PutColToFits(int nocol, int nentries, int_4* donnees) const; | 
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| [1218] | 324 | void PutColToFits(int nocol, int nentries, char** donnees) const; | 
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|  | 325 | void PutBinTabLine(long NoLine,  BnTblLine& ligne) const; | 
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| [1136] | 326 |  | 
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|  | 327 |  | 
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| [1143] | 328 | ///////////////////////////////////////////////////////////// | 
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|  | 329 | //       methods for managing any type of FITS extension | 
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|  | 330 | //////////////////////////////////////////////////////// | 
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|  | 331 |  | 
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|  | 332 |  | 
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| [1246] | 333 | void  DVListIntoPrimaryHeader(DVList& dvl) ; | 
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| [1143] | 334 |  | 
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|  | 335 |  | 
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|  | 336 |  | 
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| [1136] | 337 | private : | 
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|  | 338 |  | 
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| [1231] | 339 | void openoutputfitsfile(const char * flnm, WriteMode wrm); | 
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| [1246] | 340 | void writeSignatureOnFits(int hdunum) const; | 
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|  | 341 | void addKeywordsOfDVList( DVList& dvl) const; | 
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|  | 342 | void addDVListOnPrimary(); | 
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| [1136] | 343 |  | 
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| [1246] | 344 | DVList* dvlToPrimary_; /**< for transferring keywords when creating primary header */ | 
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| [1353] | 345 | list<FitsKeyword>  mots_cles_; | 
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|  | 346 |  | 
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| [1136] | 347 | }; | 
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|  | 348 |  | 
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| [1218] | 349 | struct BnTblLine | 
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|  | 350 | { | 
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|  | 351 | BnTblLine() {} | 
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| [1359] | 352 | void setFormat(int dc, int fc, int ic, int lc, int bc, int cc, vector<string> names); | 
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| [1218] | 353 | bool sameFormat(const BnTblLine& btl) const; | 
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| [1136] | 354 |  | 
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| [1218] | 355 | void Print(); | 
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| [1136] | 356 |  | 
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| [1218] | 357 | vector<double> ddata_; | 
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|  | 358 | vector<float>  fdata_; | 
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| [1359] | 359 | vector<int>    idata_; | 
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| [1218] | 360 | vector<string>  cdata_; | 
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|  | 361 | vector<string> ColName_; | 
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| [1359] | 362 | vector<long>   ldata_; | 
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|  | 363 | vector<unsigned char>   bdata_; | 
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|  | 364 |  | 
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| [1218] | 365 | }; | 
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|  | 366 |  | 
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|  | 367 |  | 
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| [1353] | 368 |  | 
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|  | 369 |  | 
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|  | 370 |  | 
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| [875] | 371 | } // Fin du namespace | 
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|  | 372 |  | 
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| [839] | 373 | #endif | 
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