[839] | 1 | #ifndef FITSFILE_H
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| 2 | #define FITSFILE_H
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| 3 |
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| 4 | #include "ndatablock.h"
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| 5 | #include "dvlist.h"
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| 6 | #include "FitsIO/fitsio.h"
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| 7 |
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| 8 | #define OPENFILE 0
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| 9 | #define CREATEFILE 1
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| 10 | #define LEN_KEYWORD 9
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| 11 |
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[1218] | 12 | // classes for saving/loading SOPHYA objects to/from FITS files...
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| 13 | // Guy le Meur (september 2000)
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[875] | 14 |
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[1209] | 15 |
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[1218] | 16 | namespace SOPHYA {
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[1209] | 17 |
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[1218] | 18 | struct BnTblLine;
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| 19 | class FitsFile;
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| 20 | class FitsInFile;
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| 21 | class FitsOutFile;
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[1193] | 22 |
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[1353] | 23 |
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| 24 |
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| 25 | class FitsKeyword
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| 26 | {
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| 27 |
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| 28 | public:
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| 29 |
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| 30 | FitsKeyword();
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| 31 | FitsKeyword(string comment);
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| 32 | FitsKeyword(string keyname, string value, string comment);
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[1418] | 33 | FitsKeyword(string keyname, string value, string comment, char type);
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[1353] | 34 | void writeOnFits(fitsfile* ptr);
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| 35 |
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| 36 | void Print();
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| 37 |
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| 38 | private:
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| 39 |
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| 40 | char datatype_;
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| 41 | string keyname_;
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| 42 | double dvalue_;
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| 43 | int ivalue_;
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| 44 | string svalue_;
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| 45 | string comment_;
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| 46 | };
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| 47 |
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| 48 |
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| 49 |
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[903] | 50 | //
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[1136] | 51 | //! Class for managing Interface for SOPHYA objects to FITS Format Files (uses cfitsio lib)
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[875] | 52 |
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[1353] | 53 | class FitsIOHandler {
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[903] | 54 |
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| 55 |
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[1218] | 56 | public:
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[903] | 57 |
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[1218] | 58 | virtual ~FitsIOHandler() {}
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| 59 | void Read(char flnm[],int hdunum= 0);
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| 60 | void Write(char flnm[]) ;
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| 61 | void Read(FitsInFile& ifts, int hdunum=0);
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| 62 | void Write(FitsOutFile& ofts) ;
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[903] | 63 |
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[839] | 64 |
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[1218] | 65 | protected:
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| 66 |
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| 67 | virtual void ReadFromFits(FitsInFile& is)=0;
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| 68 | virtual void WriteToFits(FitsOutFile& os) =0;
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| 69 |
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| 70 | friend class FitsInFile;
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| 71 | friend class FitsOutFile;
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[1136] | 72 | };
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| 73 |
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| 74 |
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[1218] | 75 | //! Class (virtual) for managing FITS format files
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| 76 | class FitsFile {
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[1136] | 77 |
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[1218] | 78 | public:
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[1136] | 79 |
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[1231] | 80 | enum WriteMode {append, clear, unknown};
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| 81 |
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| 82 | enum FitsExtensionType {
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[1334] | 83 | FitsExtensionType_NULL,
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[1231] | 84 | FitsExtensionType_IMAGE,
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| 85 | FitsExtensionType_ASCII_TBL,
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[1334] | 86 | FitsExtensionType_BINARY_TBL,
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| 87 | FitsExtensionType_EOF,
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| 88 | FitsExtensionType_ERROR
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[1231] | 89 | };
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| 90 | enum FitsDataType {
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[1300] | 91 | FitsDataType_NULL,
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[1231] | 92 | FitsDataType_double,
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| 93 | FitsDataType_float,
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| 94 | FitsDataType_int,
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| 95 | FitsDataType_char,
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[1359] | 96 | FitsDataType_ASCII,
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| 97 | FitsDataType_long,
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| 98 | FitsDataType_byte
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[1231] | 99 | };
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| 100 |
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[1218] | 101 | FitsFile() { InitNull(); };
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| 102 | virtual ~FitsFile();
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| 103 | static string GetErrStatus(int status);
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| 104 | inline int statusF() const { return fits_status_;}
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[1234] | 105 | inline void firstImageOnPrimaryHeader(bool choice) {imageOnPrimary_=choice;}
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[1300] | 106 | inline int currentHeaderIndex() {return hdunum_;}
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[1136] | 107 |
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| 108 |
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[1218] | 109 | protected:
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[1136] | 110 |
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[1771] | 111 | void ResetStatus(int& status) ;
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| 112 | static void printerror(int&) ;
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| 113 | static void printerror(int&,char* texte) ;
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| 114 | static void printerrorAndContinue(int& status, char* texte);
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| 115 | inline void InitNull()
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| 116 | {
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| 117 | fptr_ = NULL;
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| 118 | hdutype_= FitsExtensionType_NULL;
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| 119 | hdunum_ = 0;
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| 120 | fits_status_ = 0; imageOnPrimary_ = true;
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| 121 | }
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| 122 | inline fitsfile* fitsfilePtr() const {return fptr_;}
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| 123 |
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| 124 |
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| 125 |
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[1218] | 126 | fitsfile *fptr_; /**< pointer to the FITS file, defined in fitsio.h */
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[1334] | 127 | FitsExtensionType hdutype_; /**< image or bintable ? */
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[1218] | 128 | int hdunum_; /**< index of header to be read/written */
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| 129 | int fits_status_; /**< last status returned by fitsio library. updated only by several methods */
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[1234] | 130 | bool imageOnPrimary_;
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[1136] | 131 |
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[1218] | 132 | };
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[1136] | 133 |
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[1218] | 134 | //! Class for saving SOPHYA objects on FITS Format Files (uses cfitsio lib)
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[1136] | 135 |
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| 136 | class FitsInFile : public FitsFile {
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| 137 |
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| 138 | public:
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| 139 | FitsInFile();
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[1231] | 140 | FitsInFile(string const & flnm);
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| 141 | FitsInFile(const char * flnm);
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[1143] | 142 | ~FitsInFile() { ; };
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[1136] | 143 |
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[1218] | 144 | static int NbBlocks(char flnm[]);
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[1334] | 145 | int NbBlocks();
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[1231] | 146 | static void GetBlockType(char flnm[], int hdunum, FitsExtensionType& typeOfExtension, int& naxis, vector<int>& naxisn, FitsDataType& dataType, DVList& dvl );
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[1353] | 147 |
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| 148 | void ReadHeader(int hdunum);
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[1354] | 149 | bool hasKeyword(int hdunum, string keyw);
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| 150 | string getStringKeyword(int hdunum, string keyname,int& retStatus);
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[1353] | 151 |
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[1218] | 152 | /*! \return a reference on a DVList containing the keywords from FITS file */
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| 153 | inline const DVList& DVListFromFits() const { return dvl_;}
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[1136] | 154 |
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[1771] | 155 | void GetKeywordsFromHeader (int hdunum, list<FitsKeyword>& mots_cles) const;
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| 156 |
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| 157 |
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[1218] | 158 | DVList DVListFromPrimaryHeader() const;
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| 159 | void moveToFollowingHeader();
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[1047] | 160 |
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[1136] | 161 |
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| 162 |
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| 163 |
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| 164 | //////////////////////////////////////////////////////////
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| 165 | /////// methods for managing extensions ////////////////
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| 166 | //////////////////////////////////////////////////////////
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| 167 |
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| 168 |
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[1047] | 169 | /////////////////////////////////////////////////////////////
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[1136] | 170 | // methods for managing FITS IMAGE extension
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| 171 | ///////////////////////////////////////////////////
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[1047] | 172 |
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| 173 |
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[1218] | 174 |
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| 175 | /*! \return true if the current header corresponds to a FITS image extension */
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[1334] | 176 | inline bool IsFitsImage() const { return (hdutype_ == FitsExtensionType_IMAGE);}
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[1047] | 177 |
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[1136] | 178 |
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| 179 |
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[1218] | 180 | /*! \return number of dimensions of an image extension : NAXIS parameter (in FITS notations) */
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[861] | 181 | inline int nbDimOfImage() const {return naxis_;}
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[1218] | 182 |
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| 183 | /*! \return a reference on a vector containing sizes of the NAXIS dimensions : NAXIS1, NAXIS2, NAXIS3 etc. */
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[1047] | 184 | inline const vector<int>& dimOfImageAxes() const { return naxisn_;}
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[1218] | 185 |
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| 186 |
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| 187 | /*! \return total number of data in the current IMAGE extension */
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[839] | 188 | inline int nbOfImageData() const { return nbData_; }
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[903] | 189 |
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[1300] | 190 | /*! \return data type of the current IMAGE extension */
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| 191 | inline FitsFile::FitsDataType ImageType() const {return imageDataType_;}
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[903] | 192 |
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[1047] | 193 |
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[1771] | 194 |
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[1136] | 195 | //////////////////////////////////////////////////////////////////////////
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| 196 | // methods for managing FITS BINARY TABLE or ASCII TABLE extension
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| 197 | ////////////////////////////////////////////////////////////////////////
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[1047] | 198 |
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| 199 |
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| 200 |
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| 201 |
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[1218] | 202 | /*! \return true if the current header corresponds to a FITS ASCII or BINTABLE extension */
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[1334] | 203 | inline bool IsFitsTable() const {return (hdutype_ == FitsExtensionType_ASCII_TBL || hdutype_ == FitsExtensionType_BINARY_TBL);}
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[1047] | 204 |
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| 205 |
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[1353] | 206 |
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| 207 |
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[1218] | 208 | static void GetBinTabParameters(fitsfile* fileptr, int& nbcols, int& nrows,
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[1136] | 209 | vector<int>& repeat,
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| 210 | vector<string>& noms,
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[1300] | 211 | vector<FitsDataType>& types,
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[1136] | 212 | vector<int>& taille_des_chaines);
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[1300] | 213 | FitsDataType ColTypeFromFits(int nocol) const;
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[1218] | 214 | string ColNameFromFits(int nocol) const;
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| 215 | int ColStringLengthFromFits(int nocol) const;
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| 216 | void GetBinTabLine(int NoLine, double* ddata, float* fdata, int* idata, char
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[1047] | 217 | ** cdata) ;
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[1218] | 218 | void GetBinTabLine(long NoLine, BnTblLine& ligne) ;
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| 219 | void GetBinTabLine(int NoLine, float* fdata) ;
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[1352] | 220 | void GetBinTabFCol(r_8* valeurs, int nentries, int NoCol) const;
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| 221 | void GetBinTabFCol(r_4* valeurs, int nentries, int NoCol) const;
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| 222 | void GetBinTabFCol(int_4* valeurs, int nentries, int NoCol) const;
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[1218] | 223 | void GetBinTabFCol(char** valeurs,int nentries, int NoCol) const;
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[1047] | 224 |
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[1136] | 225 | /////////////////////////////////////////////////////////////
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| 226 | // methods for managing any type of FITS extension
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| 227 | ////////////////////////////////////////////////////////
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[1045] | 228 |
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[1334] | 229 | /*! \return true if the current header is beyond the maximum */
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| 230 | inline bool IsFitsEOF() const {return (hdutype_ == FitsExtensionType_EOF);}
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| 231 | /*! \return true if the current header is incorrect, following a cfitsio, movavs error */
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| 232 | inline bool IsFitsERROR() const {return (hdutype_ == FitsExtensionType_ERROR);}
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| 233 |
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[1136] | 234 | int NbColsFromFits() const;
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| 235 | int NentriesFromFits(int nocol) const;
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[1045] | 236 |
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| 237 |
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[1352] | 238 | void GetSingleColumn(r_8* map, int nentries) const;
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[903] | 239 |
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[1352] | 240 | void GetSingleColumn(r_4* map, int nentries) const;
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[839] | 241 |
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[1352] | 242 | void GetSingleColumn(int_4* map, int nentries) const;
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[1047] | 243 |
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[1353] | 244 |
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| 245 |
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| 246 |
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| 247 |
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[1136] | 248 | private :
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[1047] | 249 |
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[1136] | 250 | void InitNull();
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[1978] | 251 |
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[1771] | 252 | void getHeaderWithSophyaObject();
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[1136] | 253 | static void KeywordsIntoDVList(fitsfile* fileptr, DVList& dvl, int hdunum);
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[1300] | 254 | static void GetImageParameters (fitsfile* fileptr,FitsDataType& dataType,int& naxis,vector<int>& naxisn);
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[839] | 255 |
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[1300] | 256 | FitsDataType imageDataType_; /**< fits-Image parameter (bitpix)*/
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[1218] | 257 | int naxis_; /**< fits-Image parameter */
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| 258 | vector<int> naxisn_; /**< fits-Image parameters : sizes of dimensions */
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| 259 | int nbData_; /*< fits-Image parameter: number of data */
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| 260 | int nrows_; /**< Bintable parameter */
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| 261 | vector<int> repeat_; /**< Bintable parameter */
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| 262 | int nbcols_; /**< Bintable parameter */
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| 263 | vector<string> noms_; /**< Bintable parameter: column names */
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[1300] | 264 | vector<FitsDataType> types_; /**< Bintable parameters: types of columns (D: double, E: float, I: integers, A: char*) */
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[1218] | 265 | DVList dvl_; /**< DVList for transferring keywords */
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| 266 | vector<int> taille_des_chaines_; /**< Bintable parameters: length of the char* variables */
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[839] | 267 |
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[1978] | 268 | double dnull_;
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| 269 | float fnull_;
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| 270 | int inull_;
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| 271 | string cnull_;
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| 272 |
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| 273 |
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| 274 |
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[1136] | 275 | };
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[1047] | 276 |
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[1218] | 277 | //! Class for loading SOPHYA objects from FITS Format Files (uses cfitsio lib)
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[875] | 278 |
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[1136] | 279 | class FitsOutFile : public FitsFile {
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[875] | 280 |
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[1136] | 281 | public:
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[1193] | 282 |
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[1136] | 283 | FitsOutFile();
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[1231] | 284 | FitsOutFile(string const & flnm, WriteMode wrm = unknown );
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| 285 | FitsOutFile(const char * flnm, WriteMode wrm = unknown );
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[1246] | 286 | ~FitsOutFile() { if (dvlToPrimary_ != NULL) delete dvlToPrimary_;};
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| 287 | inline void InitNull() {dvlToPrimary_ = NULL;}
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[1136] | 288 |
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| 289 | //////////////////////////////////////////////////////////
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| 290 | /////// methods for managing extensions ////////////////
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| 291 | //////////////////////////////////////////////////////////
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| 292 |
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| 293 |
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| 294 |
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| 295 | /////////////////////////////////////////////////////////////
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| 296 | // methods for managing FITS IMAGE extension
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| 297 | ///////////////////////////////////////////////////
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| 298 |
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| 299 |
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[1221] | 300 | void makeHeaderImageOnFits(char type, int nbdim, int* naxisn, DVList* dvl) ;
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[1352] | 301 | void PutImageToFits( int nbData, r_8* map) const;
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| 302 | void PutImageToFits(int nbData, r_4* map ) const;
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| 303 | void PutImageToFits(int nbData, int_4* map) const;
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[1136] | 304 |
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| 305 |
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[1143] | 306 |
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[1136] | 307 | //////////////////////////////////////////////////////////////////////////
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| 308 | // methods for managing FITS BINARY TABLE or ASCII TABLE extension
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| 309 | ////////////////////////////////////////////////////////////////////////
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| 310 |
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| 311 |
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| 312 |
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[1221] | 313 | void makeHeaderBntblOnFits ( string fieldType, vector<string> Noms, int nentries, int tfields, DVList* dvl, string extname, vector<int> taille_des_chaines) ;
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[1353] | 314 | void appendInputHeader(FitsInFile& headerin, int hdunum);
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| 315 | void writeAppendedHeaderOnFits();
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| 316 | void PrintHeaderToBeAppended();
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| 317 | void insertCommentLineOnHeader(string comment);
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[1418] | 318 | void insertKeywordOnHeader(string keyname, double value, string comment);
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| 319 | void insertKeywordOnHeader(string keyname, int value, string comment);
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| 320 | void insertKeywordOnHeader(string keyname, string value, string comment);
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[1352] | 321 | void PutColToFits(int nocol, int nentries, r_8* donnees) const;
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| 322 | void PutColToFits(int nocol, int nentries, r_4* donnees) const;
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| 323 | void PutColToFits(int nocol, int nentries, int_4* donnees) const;
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[1218] | 324 | void PutColToFits(int nocol, int nentries, char** donnees) const;
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| 325 | void PutBinTabLine(long NoLine, BnTblLine& ligne) const;
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[1136] | 326 |
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| 327 |
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[1143] | 328 | /////////////////////////////////////////////////////////////
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| 329 | // methods for managing any type of FITS extension
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| 330 | ////////////////////////////////////////////////////////
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| 331 |
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| 332 |
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[1246] | 333 | void DVListIntoPrimaryHeader(DVList& dvl) ;
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[1143] | 334 |
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| 335 |
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| 336 |
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[1136] | 337 | private :
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| 338 |
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[1231] | 339 | void openoutputfitsfile(const char * flnm, WriteMode wrm);
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[1246] | 340 | void writeSignatureOnFits(int hdunum) const;
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| 341 | void addKeywordsOfDVList( DVList& dvl) const;
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| 342 | void addDVListOnPrimary();
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[1136] | 343 |
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[1246] | 344 | DVList* dvlToPrimary_; /**< for transferring keywords when creating primary header */
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[1353] | 345 | list<FitsKeyword> mots_cles_;
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| 346 |
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[1136] | 347 | };
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| 348 |
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[1218] | 349 | struct BnTblLine
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| 350 | {
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| 351 | BnTblLine() {}
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[1359] | 352 | void setFormat(int dc, int fc, int ic, int lc, int bc, int cc, vector<string> names);
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[1218] | 353 | bool sameFormat(const BnTblLine& btl) const;
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[1136] | 354 |
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[1218] | 355 | void Print();
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[1136] | 356 |
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[1218] | 357 | vector<double> ddata_;
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| 358 | vector<float> fdata_;
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[1359] | 359 | vector<int> idata_;
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[1218] | 360 | vector<string> cdata_;
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| 361 | vector<string> ColName_;
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[1359] | 362 | vector<long> ldata_;
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| 363 | vector<unsigned char> bdata_;
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| 364 |
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[1218] | 365 | };
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| 366 |
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| 367 |
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[1353] | 368 |
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| 369 |
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| 370 |
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[875] | 371 | } // Fin du namespace
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| 372 |
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[839] | 373 | #endif
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