| 1 | #ifndef FITSFILE_H
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| 2 | #define FITSFILE_H
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| 3 |
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| 4 | #include "ndatablock.h"
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| 5 | #include "dvlist.h"
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| 6 | #include "FitsIO/fitsio.h"
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| 7 |
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| 8 | #define OPENFILE 0
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| 9 | #define CREATEFILE 1
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| 10 | #define LEN_KEYWORD 9
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| 11 |
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| 12 | namespace SOPHYA {
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| 13 |
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| 14 | //
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| 15 | //! Virtual Class for managing Interface for SOPHYA objects to FITS Format Files (uses cfitsio lib)
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| 16 |
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| 17 | /*!
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| 18 |
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| 19 | Each SOPHYA object XXX is associated with a object of class FITS_XXX
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| 20 | (inheriting from FitsFile), to which input/output operations with FITS
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| 21 | files are delegated. A typical example of use is the following :
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| 22 |
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| 23 | \verbatim
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| 24 | int m=... ;
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| 25 | SphereHEALPix<r_8> sphere1(m); // definition of the SOPHYA object
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| 26 | .... fill the sphere ....
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| 27 |
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| 28 | FITS_SphereHEALPix<r_8> fits_sph1(sphere1);
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| 29 | // delegated object
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| 30 | fits_sph.Write("myfile.fits"); // writing on FITS file
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| 31 |
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| 32 | FITS_SphereHEALPix<r_8> fits_sph2("myfile.fits");
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| 33 | // load a delegated object
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| 34 | // from FITS file
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| 35 | SphereHEALPix<r_8> sphere2=(SphereHEALPix<r_8>)fits_sph2;
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| 36 | // casting the delegated object
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| 37 | // into a SOPHYA object
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| 38 | \endverbatim
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| 39 |
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| 40 | */
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| 41 | class FitsFile
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| 42 | {
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| 43 |
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| 44 | public:
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| 45 |
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| 46 | FitsFile();
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| 47 | virtual ~FitsFile();
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| 48 | static int NbBlocks(char flnm[]);
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| 49 | static void getBlockType(char flnm[], int hdunum, string& typeOfExtension, int& naxis, vector<int>& naxisn, string& dataType, DVList& dvl );
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| 50 |
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| 51 | protected:
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| 52 |
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| 53 | /*!
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| 54 | this method is called from inherited objects :
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| 55 |
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| 56 | moves to header 'hdunum' on file 'flnm'
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| 57 |
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| 58 | gets parameters in header
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| 59 |
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| 60 | calls the method 'ReadFromFits' from the inherited object
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| 61 |
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| 62 | */
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| 63 | void ReadF(char flnm[],int hdunum= 0);
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| 64 | // FitsFile* ReadFInit(char flnm[],int hdunum=0);
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| 65 | void ReadFInit(char flnm[],int hdunum=0);
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| 66 |
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| 67 | /*!
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| 68 | this method is called from inherited objects :
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| 69 |
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| 70 | opens a file 'flnm'
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| 71 |
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| 72 | gets parameters in header
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| 73 |
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| 74 | calls the method 'ReadFromFits' from the inherited object
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| 75 |
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| 76 | */
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| 77 | void WriteF(char flnm[], bool OldFile=false);
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| 78 | // virtual void ReadFromFits(FitsFile& ff)=0;
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| 79 |
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| 80 |
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| 81 |
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| 82 | virtual void ReadFromFits()=0;
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| 83 | virtual void WriteToFits()=0;
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| 84 |
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| 85 | static string getErrStatus(int status);
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| 86 |
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| 87 |
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| 88 | //////////////////////////////////////////////////////////
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| 89 | /////// methods for managing extensions ////////////////
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| 90 | //////////////////////////////////////////////////////////
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| 91 |
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| 92 | //////////////////////////////////////////////////////////
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| 93 | // methods with general purpose
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| 94 | ///////////////////////////////////////
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| 95 |
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| 96 | /*! return a reference on a DVList containing the keywords from FITS file
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| 97 | */
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| 98 | inline const DVList& DVListFromFits() const { return dvl_;}
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| 99 |
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| 100 | void moveToFollowingHeader();
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| 101 | int statusF() const;
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| 102 |
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| 103 |
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| 104 | /////////////////////////////////////////////////////////////
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| 105 | // methods for managing FITS IMAGE extension
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| 106 | ///////////////////////////////////////////////////
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| 107 |
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| 108 |
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| 109 | //read
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| 110 | //----
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| 111 |
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| 112 | /*! return true if the current header corresponds to a FITS image extension */
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| 113 | inline bool IsFitsImage() const { return (hdutype_ == IMAGE_HDU);}
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| 114 |
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| 115 | /*! number of dimensions of an image extension : NAXIS parameter (in FITS notations)
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| 116 | */
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| 117 | inline int nbDimOfImage() const {return naxis_;}
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| 118 | /*! a reference on a vector containing sizes of the NAXIS dimensions : NAXIS1, NAXIS2, NAXIS3 wtc.
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| 119 | */
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| 120 | inline const vector<int>& dimOfImageAxes() const { return naxisn_;}
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| 121 | /*!
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| 122 | total number of data in the current IMAGE extension
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| 123 | */
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| 124 | inline int nbOfImageData() const { return nbData_; }
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| 125 |
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| 126 |
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| 127 | //write
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| 128 | //-----
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| 129 |
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| 130 |
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| 131 | /*! create an IMAGE header on FITS file.
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| 132 | \param <type> type of data (see method ColTypeFromFits)
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| 133 | \param <nbdim> number of dimensions : 1D, 2D, 3D etc. = NAXIS
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| 134 | \param <naxisn> array containind sizes of the different dimensions
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| 135 | */
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| 136 | void makeHeaderImageOnFits(char type, int nbdim, int* naxisn) ;
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| 137 |
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| 138 | /*! write double data from array 'map'on an IMAGE extension
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| 139 | \param <nbData> number of data to be written
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| 140 |
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| 141 | */
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| 142 | void putImageToFits( int nbData, double* map) const;
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| 143 |
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| 144 | /*! same as previous method with float data */
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| 145 | void putImageToFits(int nbData, float* map ) const;
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| 146 |
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| 147 | /*! same as previous method with int data */
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| 148 | void putImageToFits(int nbData, int* map) const;
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| 149 |
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| 150 |
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| 151 |
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| 152 | //////////////////////////////////////////////////////////////////////////
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| 153 | // methods for managing FITS BINARY TABLE or ASCII TABLE extension
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| 154 | ////////////////////////////////////////////////////////////////////////
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| 155 |
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| 156 |
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| 157 |
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| 158 | // read
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| 159 | //-----
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| 160 |
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| 161 | /*! return true if the current header corresponds to a FITS ASCII or BINTABLE extension */
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| 162 | inline bool IsFitsTable() const {return (hdutype_ == ASCII_TBL || hdutype_ == BINARY_TBL);}
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| 163 | /*! return number of columns (return 1 if IMAGE) */
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| 164 | int NbColsFromFits() const;
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| 165 | /*! number of data in the current IMAGE extension on FITS file, or number
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| 166 | of data of column number 'nocol' of the current BINTABLE extension
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| 167 | */
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| 168 | int NentriesFromFits(int nocol) const;
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| 169 | /*! return a character denoting data type of column number 'nocol' in a BINTABLE :
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| 170 |
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| 171 | D : double
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| 172 |
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| 173 | E : float
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| 174 |
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| 175 | I : integer
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| 176 |
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| 177 | S : character string
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| 178 |
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| 179 | */
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| 180 | char ColTypeFromFits(int nocol) const;
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| 181 | /*! name of the column number 'nocol' of the current BINTABLE extension
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| 182 | */
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| 183 | string ColNameFromFits(int nocol) const;
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| 184 |
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| 185 | /*! number of characters of each data for the column number 'nocol' (if char* typed) of the current BINTABLE extension
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| 186 | */
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| 187 | int ColStringLengthFromFits(int nocol) const;
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| 188 |
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| 189 |
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| 190 |
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| 191 | /*!
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| 192 | get the NoLine-th 'line' from the current BINTABLE extension on FITS file,
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| 193 | */
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| 194 | void GetBinTabLine(int NoLine, double* ddata, float* fdata, int* idata, char
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| 195 | ** cdata) ;
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| 196 |
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| 197 | /*!
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| 198 | get the NoLine-th 'line' from the current BINTABLE extension on FITS file,
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| 199 | */
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| 200 | void GetBinTabLine(int NoLine, float* fdata) ;
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| 201 |
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| 202 |
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| 203 |
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| 204 |
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| 205 |
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| 206 | /*!
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| 207 | fill the array 'valeurs' with double data from the current BINTABLE extension on FITS file, from column number 'NoCol'
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| 208 |
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| 209 | \param <nentries> number of data to be read
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| 210 | */
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| 211 | void GetBinTabFCol(double* valeurs, int nentries, int NoCol) const;
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| 212 |
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| 213 | /*! same as previous method with float data */
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| 214 | void GetBinTabFCol(float* valeurs, int nentries, int NoCol) const;
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| 215 | /*! same as previous method with int data */
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| 216 | void GetBinTabFCol(int* valeurs, int nentries, int NoCol) const;
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| 217 | /*! same as previous method with char* data */
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| 218 | void GetBinTabFCol(char** valeurs,int nentries, int NoCol) const;
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| 219 | // Write elements into the FITS data array
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| 220 |
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| 221 |
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| 222 |
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| 223 | //write
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| 224 | //-----
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| 225 |
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| 226 | /*! create an BINTABLE header on FITS file.
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| 227 | \param <fieldType> array containing characters denoting types of the different column (see method ColTypeFromFits)
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| 228 | \param <Noms> array of the names of columns
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| 229 | \param <nentries> number of data of each column
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| 230 | \param <tfields> number of columns
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| 231 | \param <dvl> a SOPHYA DVList containing keywords to be appended
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| 232 | \param <extname> keyword EXTNAME for FITS file
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| 233 | \param <taille_des_chaines> vector containing the number of characters of data for each char* typed column, with order of appearance in 'fieldType'
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| 234 | */
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| 235 | void makeHeaderBntblOnFits ( char* fieldType, char** Noms, int nentries, int tfields, DVList &dvl, char* extname, vector<int> taille_des_chaines) ;
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| 236 |
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| 237 | /*! write double data from array 'donnees ' on column number 'nocol' of a BINTABLE extension.
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| 238 | \param <nentries> number of data to be written
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| 239 |
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| 240 | */
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| 241 | void putColToFits(int nocol, int nentries, double* donnees) const;
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| 242 |
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| 243 | /*! same as previous method with float data */
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| 244 | void putColToFits(int nocol, int nentries, float* donnees) const;
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| 245 |
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| 246 | /*! same as previous method with int data */
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| 247 | void putColToFits(int nocol, int nentries, int* donnees) const;
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| 248 |
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| 249 | /*! same as previous method with char* data */
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| 250 | void putColToFits(int nocol, int nentries, char** donnees) const;
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| 251 |
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| 252 |
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| 253 | /////////////////////////////////////////////////////////////
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| 254 | // methods for managing any type of FITS extension
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| 255 | ////////////////////////////////////////////////////////
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| 256 |
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| 257 |
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| 258 | /*!
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| 259 | fill the array 'map' with double data from the current extension on FITS file.
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| 260 | If the extension is BINTABLE, the first column is provided.
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| 261 |
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| 262 | \param <nentries> number of data to be read
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| 263 | */
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| 264 | void GetSingleColumn(double* map, int nentries) const;
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| 265 |
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| 266 | /*! same as above with float data */
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| 267 | void GetSingleColumn(float* map, int nentries) const;
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| 268 |
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| 269 | /*! same as above with int data */
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| 270 | void GetSingleColumn(int* map, int nentries) const;
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| 271 |
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| 272 |
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| 273 |
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| 274 | private:
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| 275 |
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| 276 | void InitNull();
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| 277 | void ResetStatus(int& status) ;
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| 278 | static void printerror(int&) ;
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| 279 | static void printerror(int&,char* texte) ;
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| 280 |
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| 281 | static void GetImageParameters (fitsfile* fileptr,int& bitpix,int& naxis,vector<int>& naxisn);
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| 282 | static void GetBinTabParameters(fitsfile* fileptr, int& nbcols, int& nrows,
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| 283 | vector<int>& repeat,
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| 284 | vector<string>& noms,
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| 285 | vector<char>& types,
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| 286 | vector<int>& taille_des_chaines);
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| 287 | static void KeywordsIntoDVList(fitsfile* fileptr, DVList& dvl, int hdunum);
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| 288 | void writeSignatureOnFits() const;
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| 289 |
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| 290 | //! pointer to the FITS file, defined in fitsio.h
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| 291 | fitsfile *fptr_;
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| 292 |
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| 293 | //! image or bintable ?
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| 294 | int hdutype_;
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| 295 |
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| 296 | //! index of header to be read/written
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| 297 | int hdunum_;
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| 298 |
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| 299 |
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| 300 | //! fits-Image parameter
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| 301 | int bitpix_;
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| 302 |
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| 303 | //! fits-Image parameter
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| 304 | int naxis_;
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| 305 |
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| 306 | //! fits-Image parameters : sizes of dimensions
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| 307 | vector<int> naxisn_;
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| 308 |
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| 309 | //! fits-Image parameter: number of data
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| 310 | int nbData_;
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| 311 |
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| 312 | //! Bintable parameter
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| 313 | int nrows_;
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| 314 |
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| 315 | //! Bintable parameter
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| 316 | vector<int> repeat_;
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| 317 |
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| 318 | //! Bintable parameter
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| 319 | int nbcols_;
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| 320 |
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| 321 | //! Bintable parameter: column names
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| 322 | vector<string> noms_;
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| 323 |
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| 324 | //! Bintable parameters: types of columns (D: double, E: float, I: integers, A: char*)
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| 325 | vector<char> types_;
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| 326 |
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| 327 | //! Bintable parameters: length of the char* variables
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| 328 | vector<int> taille_des_chaines_;
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| 329 |
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| 330 | //! DVList for transferring keywords
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| 331 | DVList dvl_;
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| 332 |
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| 333 |
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| 334 |
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| 335 | //! last status returned by fitsio library. updated only by several methods
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| 336 | int fits_status_;
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| 337 | };
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| 338 |
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| 339 |
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| 340 | } // Fin du namespace
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| 341 |
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| 342 |
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| 343 | #endif
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