1 | #ifndef FITSFILE_H
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2 | #define FITSFILE_H
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3 |
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4 | #include "ndatablock.h"
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5 | #include "dvlist.h"
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6 | #include "FitsIO/fitsio.h"
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7 |
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8 | #define OPENFILE 0
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9 | #define CREATEFILE 1
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10 | #define LEN_KEYWORD 9
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11 |
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12 | namespace SOPHYA {
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13 |
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14 | //
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15 | //! Virtual Class for managing Interface for SOPHYA objects to FITS Format Files (uses cfitsio lib)
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16 |
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17 | /*!
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18 |
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19 | Each SOPHYA object XXX is associated with a object of class FITS_XXX
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20 | (inheriting from FitsFile), to which input/output operations with FITS
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21 | files are delegated. A typical example of use is the following :
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22 |
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23 | \verbatim
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24 | int m=... ;
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25 | SphereHEALPix<r_8> sphere1(m); // definition of the SOPHYA object
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26 | .... fill the sphere ....
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27 |
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28 | FITS_SphereHEALPix<r_8> fits_sph1(sphere1);
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29 | // delegated object
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30 | fits_sph.Write("myfile.fits"); // writing on FITS file
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31 |
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32 | FITS_SphereHEALPix<r_8> fits_sph2("myfile.fits");
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33 | // load a delegated object
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34 | // from FITS file
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35 | SphereHEALPix<r_8> sphere2=(SphereHEALPix<r_8>)fits_sph2;
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36 | // casting the delegated object
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37 | // into a SOPHYA object
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38 | \endverbatim
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39 |
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40 | */
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41 | class FitsFile
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42 | {
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43 |
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44 | public:
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45 |
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46 | FitsFile();
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47 | virtual ~FitsFile();
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48 | static int NbBlocks(char flnm[]);
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49 | static void getBlockType(char flnm[], int hdunum, string& typeOfExtension, int& naxis, vector<int>& naxisn, string& dataType, DVList& dvl );
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50 | /*! return true if the current header corresponds to a FITS image extension */
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51 | inline bool IsFitsImage() const { return (hdutype_ == IMAGE_HDU);}
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52 |
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53 | /*! return true if the current header corresponds to a FITS ASCII or BINTABLE extension */
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54 | inline bool IsFitsTable() const {return (hdutype_ == ASCII_TBL || hdutype_ == BINARY_TBL);}
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55 |
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56 | /*!
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57 | this method is called from inherited objects :
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58 |
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59 | moves to header 'hdunum' on file 'flnm'
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60 |
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61 | gets parameters in header
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62 |
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63 | calls the method 'ReadFromFits' from the inherited delegated object
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64 |
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65 | */
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66 | void ReadF(char flnm[],int hdunum= 0);
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67 |
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68 | /*!
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69 | this method is called from inherited objects :
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70 |
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71 | opens a file 'flnm'
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72 |
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73 | gets parameters in header
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74 |
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75 | calls the method 'ReadFromFits' from the inherited delegated object
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76 |
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77 | */
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78 | void WriteF(char flnm[],int hdunum= 0);
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79 |
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80 |
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81 | /*!
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82 | fill the array 'map' with double data from the current extension on FITS file.
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83 | If the extension is BINTABLE, the first column is provided.
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84 |
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85 | \param <nentries> number of data to be read
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86 | */
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87 | void GetSingleColumn(double* map, int nentries) const;
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88 |
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89 | /*! same as above with float data */
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90 | void GetSingleColumn(float* map, int nentries) const;
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91 |
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92 | /*! same as above with int data */
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93 | void GetSingleColumn(int* map, int nentries) const;
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94 |
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95 | /*! number of dimensions of an image extension : NAXIS parameter (in FITS notations)
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96 | */
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97 | inline int nbDimOfImage() const {return naxis_;}
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98 |
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99 | /*!
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100 | total number of data in the current IMAGE extension
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101 | */
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102 | inline int nbOfImageData() const { return nbData_; }
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103 |
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104 | /*! a reference on a vector containing sizes of the NAXIS dimensions : NAXIS1, NAXIS2, NAXIS3 wtc.
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105 | */
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106 | inline const vector<int>& dimOfImageAxes() const { return naxisn_;}
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107 |
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108 | /*! return number of columns (return 1 if IMAGE) */
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109 | int NbColsFromFits() const;
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110 |
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111 | /*! return a character denoting data type of column number 'nocol' in a BINTABLE :
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112 |
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113 | D : double
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114 |
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115 | E : float
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116 |
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117 | I : integer
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118 |
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119 | S : character string
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120 |
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121 | */
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122 | char ColTypeFromFits(int nocol) const;
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123 |
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124 | /*! number of data in the current IMAGE extension on FITS file, or number
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125 | of data of column number 'nocol' of the current BINTABLE extension
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126 | */
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127 | int NentriesFromFits(int nocol) const;
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128 |
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129 | /*! name of the column number 'nocol' of the current BINTABLE extension
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130 | */
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131 | string ColNameFromFits(int nocol) const;
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132 |
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133 |
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134 | /*! number of characters of each data for the column number 'nocol' (if char* typed) of the current BINTABLE extension
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135 | */
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136 | int ColStringLengthFromFits(int nocol) const;
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137 |
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138 | /*! return a reference on a DVList containing the keywords from FITS file
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139 | */
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140 | inline const DVList& DVListFromFits() const { return dvl_;}
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141 |
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142 |
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143 | /*!
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144 | fill the array 'valeurs' with double data from the current BINTABLE extension on FITS file, from column number 'NoCol'
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145 |
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146 | \param <nentries> number of data to be read
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147 | */
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148 | void GetBinTabFCol(double* valeurs, int nentries, int NoCol) const;
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149 |
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150 | /*! same as previous method with float data */
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151 | void GetBinTabFCol(float* valeurs, int nentries, int NoCol) const;
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152 | /*! same as previous method with int data */
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153 | void GetBinTabFCol(int* valeurs, int nentries, int NoCol) const;
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154 | /*! same as previous method with char* data */
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155 | void GetBinTabFCol(char** valeurs,int nentries, int NoCol) const;
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156 | // Write elements into the FITS data array
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157 |
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158 | /*! write double data from array 'map'on an IMAGE extension
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159 | \param <nbData> number of data to be written
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160 |
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161 | */
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162 | void putImageToFits( int nbData, double* map) const;
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163 |
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164 | /*! same as previous method with float data */
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165 | void putImageToFits(int nbData, float* map ) const;
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166 |
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167 | /*! same as previous method with int data */
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168 | void putImageToFits(int nbData, int* map) const;
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169 |
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170 | /*! write double data from array 'donnees ' on column number 'nocol' of a BINTABLE extension.
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171 | \param <nentries> number of data to be written
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172 |
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173 | */
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174 | void putColToFits(int nocol, int nentries, double* donnees) const;
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175 |
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176 | /*! same as previous method with float data */
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177 | void putColToFits(int nocol, int nentries, float* donnees) const;
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178 |
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179 | /*! same as previous method with int data */
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180 | void putColToFits(int nocol, int nentries, int* donnees) const;
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181 |
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182 | /*! same as previous method with char* data */
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183 | void putColToFits(int nocol, int nentries, char** donnees) const;
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184 |
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185 | /*! create an IMAGE header on FITS file.
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186 | \param <type> type of data (see method ColTypeFromFits)
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187 | \param <nbdim> number of dimensions : 1D, 2D, 3D etc. = NAXIS
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188 | \param <naxisn> array containind sizes of the different dimensions
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189 | */
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190 | void makeHeaderImageOnFits(char type, int nbdim, int* naxisn) const;
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191 |
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192 | /*! create an BINTABLE header on FITS file.
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193 | \param <fieldType> array containing characters denoting types of the different column (see method ColTypeFromFits)
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194 | \param <Noms> array of the names of columns
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195 | \param <nentries> number of data of each column
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196 | \param <tfields> number of columns
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197 | \param <dvl> a SOPHYA DVList containing keywords to be appended
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198 | \param <extname> keyword EXTNAME for FITS file
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199 | \param <taille_des_chaines> vector containing the number of characters of data for each char* typed column, with order of appearance in 'fieldType'
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200 | */
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201 | void makeHeaderBntblOnFits ( char* fieldType, char** Noms, int nentries, int tfields, DVList &dvl, char* extname, vector<int> taille_des_chaines) const;
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202 |
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203 | void readheader();
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204 | static void printerror(int&) ;
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205 | static void printerror(int&,char* texte) ;
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206 | protected:
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207 | virtual void ReadFromFits(const FitsFile& ff)=0;
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208 | virtual void WriteToFits(const FitsFile& ff)=0;
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209 | private:
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210 |
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211 | static void GetImageParameters (fitsfile* fileptr,int& bitpix,int& naxis,vector<int>& naxisn);
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212 | static void GetBinTabParameters(fitsfile* fileptr, int& nbcols, int& nrows,
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213 | vector<int>& repeat,
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214 | vector<string>& noms,
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215 | vector<char>& types,
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216 | vector<int>& taille_des_chaines);
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217 | static void KeywordsIntoDVList(fitsfile* fileptr, DVList& dvl);
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218 | void writeSignatureOnFits() const;
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219 |
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220 | //! pointer to the FITS file, defined in fitsio.h
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221 | fitsfile *fptr_;
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222 |
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223 | //! image or bintable ?
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224 | int hdutype_;
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225 |
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226 | //! index of header to be read/written
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227 | int hdunum_;
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228 |
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229 |
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230 | //! fits-Image parameter
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231 | int bitpix_;
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232 |
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233 | //! fits-Image parameter
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234 | int naxis_;
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235 |
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236 | //! fits-Image parameters : sizes of dimensions
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237 | vector<int> naxisn_;
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238 |
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239 | //! fits-Image parameter: number of data
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240 | int nbData_;
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241 |
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242 | //! Bintable parameter
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243 | int nrows_;
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244 |
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245 | //! Bintable parameter
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246 | vector<int> repeat_;
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247 |
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248 | //! Bintable parameter
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249 | int nbcols_;
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250 |
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251 | //! Bintable parameter: column names
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252 | vector<string> noms_;
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253 |
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254 | //! Bintable parameters: types of columns (D: double, E: float, I: integers, A: char*)
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255 | vector<char> types_;
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256 |
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257 | //! Bintable parameters: length of the char* variables
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258 | vector<int> taille_des_chaines_;
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259 |
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260 | //! DVList for transferring keywords
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261 | DVList dvl_;
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262 | };
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263 |
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264 |
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265 | } // Fin du namespace
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266 |
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267 |
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268 | #endif
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