1 | #include "sopnamsp.h"
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2 | #include "machdefs.h"
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3 | #include "segdatablock.h"
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4 | #include "fitsinoutfile.h"
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5 | #include <stdio.h>
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6 | #include <string.h>
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7 | #include <iostream>
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8 |
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9 |
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10 | /*!
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11 | \class SOPHYA::FitsInOutFile
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12 | \ingroup FitsIOServer
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13 | \brief Wrapper class for cfitsio library functions
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14 | */
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15 |
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16 | /*-- Methode --*/
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17 | //! Default constructor - The file should be opened subsequently using Open
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18 | FitsInOutFile::FitsInOutFile()
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19 | {
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20 | fptr_ = NULL;
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21 | SetDef_BinTable();
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22 | }
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23 |
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24 | /*-- Methode --*/
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25 | //! Constructor with specification of file name and access mode
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26 | FitsInOutFile::FitsInOutFile(string const & name, FitsIOMode mode)
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27 | {
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28 | // cout << " DBG - FitsInOutFile(string name= " << name << ")" << endl;
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29 | fptr_ = NULL;
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30 | SetDef_BinTable();
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31 | Open(name.c_str(), mode);
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32 | }
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33 |
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34 | /*-- Methode --*/
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35 | //! Constructor with specification of file name and access mode
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36 | FitsInOutFile::FitsInOutFile(const char * name, FitsIOMode mode)
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37 | {
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38 | // cout << " DBG - FitsInOutFile(char* name= " << name << ")" << endl;
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39 | fptr_ = NULL;
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40 | SetDef_BinTable();
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41 | Open(name, mode);
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42 | }
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43 |
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44 | /* -- Fonction utilitaire pour verifier fichier ouvert (pointeur non null) -- */
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45 | static inline void CheckFitsPtr(fitsfile* fptr) {
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46 | if (fptr == NULL) throw FitsIOException("FitsInOutFile/Error - NULL fitsfile pointer ");
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47 | return;
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48 | }
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49 | /* -- Fonction utilitaire pour verifier le code d'erreur fitsio -- */
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50 | static inline bool FitsCheckStatus(int st, char * emsg = NULL) {
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51 | if (st) {
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52 | fits_report_error(stderr, st);
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53 | if (emsg) {
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54 | char buff[FLEN_ERRMSG];
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55 | fits_get_errstatus(st, buff);
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56 | string msg = emsg;
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57 | msg += buff;
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58 | throw FitsIOException(msg);
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59 | }
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60 | else return true;
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61 | }
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62 | else return false;
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63 | }
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64 |
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65 | /*-- Methode --*/
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66 | //! Destructor - Closes the fits file (if opened)
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67 | FitsInOutFile::~FitsInOutFile()
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68 | {
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69 | Close();
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70 | }
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71 |
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72 | /*-- Methode --*/
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73 | //! Opens the named fits file (see cfitsio routines fits_open_file and fits_create_file)
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74 | void FitsInOutFile::Open(const char* name, FitsIOMode mode)
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75 | {
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76 | if (fptr_ != NULL)
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77 | throw FitsIOException("FitsInOutFile::Open() /Error - file already opened ");
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78 | int status = 0;
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79 | fptr_ = NULL;
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80 | switch ( mode ) {
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81 | case Fits_RO :
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82 | fits_open_file(&fptr_, name, READONLY, &status);
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83 | break;
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84 | case Fits_RW :
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85 | fits_open_file(&fptr_, name, READWRITE, &status);
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86 | break;
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87 | case Fits_Create :
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88 | fits_create_file(&fptr_, name, &status);
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89 | break;
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90 | }
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91 | FitsCheckStatus(status, "FitsInOutFile::Open() Error: ");
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92 | fname_ = name;
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93 | mode_ = mode;
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94 | return;
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95 | }
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96 |
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97 | /*-- Methode --*/
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98 | //! Opens the named fits file (see cfitsio routines fits_open_file and fits_create_file)
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99 | void FitsInOutFile::Close()
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100 | {
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101 | if (fptr_ == NULL) return;
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102 | int status = 0;
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103 | if (mode_ == Fits_Create) {
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104 | status = 0;
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105 | int hdutyp;
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106 | fits_movabs_hdu(FitsPtr() , 1, &hdutyp, &status);
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107 | status = 0;
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108 | float sfv = 2.0;
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109 | fits_write_key(FitsPtr(), TFLOAT, "SOPHYAFV", &sfv,
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110 | "SOPHYA FitsIOServer module version", &status);
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111 | fits_write_date(FitsPtr(), &status);
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112 | status = 0;
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113 | fits_write_comment(FitsPtr(), "------------- SOPHYA (http://www.sophya.org) -------------", &status);
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114 | fits_write_comment(FitsPtr(), " (C) LAL/IN2P3-CNRS Orsay , (C) DAPNIA/CEA Saclay (FRANCE)", &status);
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115 | fits_write_comment(FitsPtr(), "-----------------------------------------------------------", &status);
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116 | }
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117 | MoveAbsToHDU(1);
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118 | status = 0;
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119 | if (fptr_) fits_close_file(fptr_, &status);
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120 | if (status) {
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121 | cerr << " FitsInOutFile::Close - Error closing fits file !" << endl;
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122 | fits_report_error(stderr, status);
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123 | }
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124 | }
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125 |
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126 |
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127 | /*-- Methode --*/
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128 | float FitsInOutFile::cfitsioVersion()
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129 | {
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130 | float ver;
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131 | fits_get_version(&ver);
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132 | return ver;
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133 | }
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134 |
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135 | /*-- Methode --*/
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136 | int FitsInOutFile::NbHDUs() const
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137 | {
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138 | int status = 0;
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139 | int nbhdu = 0;
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140 | fits_get_num_hdus(FitsPtr() , &nbhdu, &status);
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141 | FitsCheckStatus(status, "FitsInOutFile::NbHDUs() Error: ");
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142 | return nbhdu;
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143 | }
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144 |
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145 | /*-- Methode --*/
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146 | int FitsInOutFile::CurrentHDU() const
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147 | {
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148 | int status = 0;
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149 | int curhdu = 0;
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150 | fits_get_hdu_num(FitsPtr() , &curhdu);
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151 | return curhdu;
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152 | }
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153 |
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154 | /*-- Methode --*/
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155 | int FitsInOutFile::CurrentHDUType() const
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156 | {
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157 | int status = 0;
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158 | int hdutyp = 0;
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159 | fits_get_hdu_type(FitsPtr() , &hdutyp, &status);
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160 | FitsCheckStatus(status, "FitsInOutFile::CurrentHDUType() Error: ");
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161 | return hdutyp;
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162 | }
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163 |
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164 | /*-- Methode --*/
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165 | string FitsInOutFile::CurrentHDUTypeStr() const
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166 | {
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167 | int status = 0;
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168 | int hdutyp = 0;
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169 | fits_get_hdu_type(FitsPtr() , &hdutyp, &status);
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170 | if ( FitsCheckStatus(status, "FitsInOutFile::CurrentHDUTypeStr() Error: ") )
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171 | return "Unknown";
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172 | else {
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173 | if (hdutyp == IMAGE_HDU) return "IMAGE_HDU";
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174 | else if (hdutyp == BINARY_TBL) return "BINARY_TBL";
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175 | else if (hdutyp == ASCII_TBL) return "ASCII_TBL";
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176 | else return "Unknown";
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177 | }
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178 | }
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179 |
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180 | /*-- Methode --*/
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181 | int FitsInOutFile::MoveAbsToHDU(int hdunum)
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182 | {
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183 | int status = 0;
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184 | int hdutyp = 0;
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185 | fits_movabs_hdu(FitsPtr() , hdunum, &hdutyp, &status);
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186 | FitsCheckStatus(status, "FitsInOutFile::MoveAbsToHDU Error: ");
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187 | return hdutyp;
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188 | }
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189 |
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190 | /*-- Methode --*/
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191 | int FitsInOutFile::MoveRelToHDU(int hdunum)
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192 | {
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193 | int status = 0;
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194 | int hdutyp = 0;
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195 | fits_movrel_hdu(FitsPtr() , hdunum, &hdutyp, &status);
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196 | FitsCheckStatus(status, "FitsInOutFile::MoveRelToHDU Error: ");
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197 | return hdutyp;
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198 | }
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199 |
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200 | /*-- Methode --*/
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201 | int FitsInOutFile::MoveToNextHDU()
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202 | {
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203 | if (CurrentHDU() < NbHDUs())
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204 | return MoveRelToHDU(1);
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205 | else return -1;
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206 | }
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207 |
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208 | /*-- Methode --*/
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209 | void FitsInOutFile::CreateImageHDU(int bitpix, int naxis, long* naxes)
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210 | {
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211 | int status = 0;
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212 | fits_create_img(fptr_, bitpix, naxis, naxes, &status);
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213 | FitsCheckStatus(status,"FitsInOutFile::CreateImageHDU() Error: ");
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214 | return;
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215 | }
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216 |
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217 | /*-- Methode --*/
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218 | /*!
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219 | See cfitsio function fits_get_img_param() for more information
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220 | naxis : input=max naxes dimension / out=image dimension
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221 | Rc : return the image type (bitpix)
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222 | */
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223 | int FitsInOutFile::GetImageHDUInfo(int& naxis, long* naxes) const
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224 | {
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225 | int status = 0;
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226 | int maxdim = naxis;
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227 | int bitpix = 0;
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228 | fits_get_img_param(fptr_, maxdim, &bitpix, &naxis, naxes, &status);
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229 | FitsCheckStatus(status, "FitsInOutFile::GetImageHDUInfo() Error: ");
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230 | return bitpix;
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231 | }
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232 |
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233 | /*-- Methode --*/
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234 | long FitsInOutFile::GetNbRows() const
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235 | {
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236 | int status = 0;
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237 | long nbrow = 0;
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238 | fits_get_num_rows(FitsPtr() , &nbrow, &status);
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239 | FitsCheckStatus(status, "FitsInOutFile::GetNbRows() Error: " );
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240 | return nbrow;
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241 | }
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242 |
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243 | /*-- Methode --*/
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244 | int FitsInOutFile::GetNbCols() const
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245 | {
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246 | int status = 0;
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247 | int nbcol = 0;
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248 | fits_get_num_cols(FitsPtr() , &nbcol, &status);
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249 | FitsCheckStatus(status, "FitsInOutFile::GetNbCols() Error: ");
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250 | return nbcol;
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251 | }
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252 |
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253 | /*-- Methode --*/
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254 | /*!
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255 | Create a binary or ascii table - See cfitsio routine fits_create_tbl for more information.
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256 | \param extname : extension name. NextExtensionName() will be used if extname == NULL or extname == "".
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257 | \param ncols : Number of columns
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258 | \param ttype : Column names
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259 | \param tform : Column data types J / V / K / E / D ...
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260 | \param tunit : Column units
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261 | */
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262 | void FitsInOutFile::CreateTable(int tbltyp, const char * extname, int ncols,
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263 | char * ttype[], char * tform[],
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264 | char * tunit[], long ininr)
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265 | {
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266 | int status = 0;
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267 |
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268 | char * extn;
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269 | if ( (extname != NULL) && (extname[0] != '\0') ) extn = const_cast<char *>(extname);
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270 | else extn = const_cast<char *>(next_extname_.c_str());
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271 |
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272 | fits_create_tbl(FitsPtr(), tbltyp, ininr, ncols, ttype,
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273 | tform, tunit, extn, &status);
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274 | next_extname_ = "";
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275 | FitsCheckStatus(status, "FitsInOutFile::CreateTable() Error: ");
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276 | return;
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277 | }
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278 |
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279 | /*-- Methode --*/
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280 | /*!
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281 | Create a binary or ascii table - See cfitsio routine fits_create_tbl for more information.
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282 | number of columns specified by colnames.size()
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283 | \param extname : extension name
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284 | \param colnames : Column names
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285 | \param tform : Column data types J / V / K / E / D ...
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286 | \param tunit : Column units
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287 | */
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288 | void FitsInOutFile::CreateTable(int tbltyp, const string & extname,
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289 | const vector<string> & colnames,
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290 | const vector<string> & tform,
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291 | const vector<string> & tunit,
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292 | long ininr)
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293 | {
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294 | if ( (colnames.size() != tform.size() ) ||
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295 | (colnames.size() != tunit.size() ) )
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296 | throw SzMismatchError("FitsInOutFile::CreateTable(): different sizes for colnames,tform,tunit");
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297 |
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298 | // On utilise les SegDataBlock<T> pour eviter d'avoir a gerer les new/delete
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299 | // en plus avec les exceptions ...
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300 | size_t kk;
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301 | int ncols = colnames.size();
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302 |
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303 | SegDataBlock<const char *> colnm(colnames.size(), 1);
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304 | for(kk=0; kk<colnames.size(); kk++) colnm[kk] = colnames[kk].c_str();
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305 | SegDataBlock<const char *> tfm(tform.size(), 1);
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306 | for(kk=0; kk<tform.size(); kk++) tfm[kk] = tform[kk].c_str();
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307 | SegDataBlock<const char *> tun(tunit.size(), 1);
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308 | for(kk=0; kk<tunit.size(); kk++) tun[kk] = tunit[kk].c_str();
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309 |
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310 | CreateTable(tbltyp, const_cast<char *>(extname.c_str()), ncols,
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311 | const_cast<char **>(colnm.GetSegment(0)),
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312 | const_cast<char **>(tfm.GetSegment(0)),
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313 | const_cast<char **>(tun.GetSegment(0)),
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314 | ininr);
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315 | }
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316 |
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317 | /*-- Methode --*/
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318 | /*!
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319 | Return number of columns in table (See fits_get_colname and fits_get_coltype for more information)
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320 | \param colnames : Column names
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321 | \param coltypes : Column data types ( TSTRING / TSHORT / TFLOAT / ... )
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322 | \param repcnt : Repeat count (for columns with vector data)
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323 | \param width : The width (in bytes) of a single element in a column
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324 |
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325 | */
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326 | long FitsInOutFile::GetColInfo(vector<string> & colnames,
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327 | vector<int> & coltypes,
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328 | vector<long> & repcnt,
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329 | vector<long> & width)
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330 | {
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331 |
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332 | int status = 0;
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333 |
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334 | colnames.clear();
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335 | coltypes.clear();
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336 | width.clear();
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337 | repcnt.clear();
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338 |
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339 | int colnum, typecode;
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340 | long repeat, colw;
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341 | int ncols = 0;
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342 | char colname[128]; // longueur max d'un nom de colonne
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343 |
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344 | while (status != COL_NOT_FOUND) {
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345 | fits_get_colname(FitsPtr(), CASEINSEN, "*", colname, &colnum, &status);
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346 | if (status == COL_NOT_FOUND) break;
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347 | if (status != COL_NOT_UNIQUE) {
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348 | char buff[32];
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349 | fits_get_errstatus(status, buff);
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350 | string msg = "FitsInOutFile::GetColInfo() Error(1): " ;
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351 | msg += buff;
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352 | throw FitsIOException(msg);
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353 | }
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354 | int sta2 = 0;
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355 | fits_get_coltype(FitsPtr(), colnum, &typecode, &repeat, &colw, &sta2);
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356 | FitsCheckStatus(sta2, "FitsInOutFile::GetColInfo() Error(2): ");
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357 |
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358 | colnames.push_back(colname);
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359 | coltypes.push_back(typecode);
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360 | repcnt.push_back(repeat);
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361 | width.push_back(colw);
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362 | }
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363 | return colnames.size();
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364 | }
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365 |
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366 | /*-- Methode --*/
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367 | void FitsInOutFile::InsertColumn(int numcol, const char* colname, const char* fmt)
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368 | {
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369 | int status = 0;
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370 | fits_insert_col(FitsPtr(), numcol, const_cast<char *>(colname),
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371 | const_cast<char *>(fmt), &status);
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372 | FitsCheckStatus(status, "FitsInOutFile::AddColumn() Error: ");
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373 |
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374 | return;
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375 | }
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376 |
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377 | /*-- Methode --*/
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378 | string FitsInOutFile::KeyValue(string const & key)
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379 | {
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380 | int status = 0;
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381 | char value[FLEN_VALUE], comm[FLEN_COMMENT];
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382 | fits_read_key(FitsPtr(), TSTRING, const_cast<char *>(key.c_str()), value, comm, &status);
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383 | FitsCheckStatus(status, "FitsInOutFile::KeyValue() Error: ");
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384 | return value;
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385 | }
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386 |
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387 | /*-- Methode --*/
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388 | int FitsInOutFile::GetHeaderRecords(DVList& dvl)
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389 | {
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390 | int status = 0;
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391 | int nkeys = 0;
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392 | fits_get_hdrspace(FitsPtr(), &nkeys, NULL, &status);
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393 | FitsCheckStatus(status, "FitsInOutFile::GetHeaderRecords() Error(1): ");
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394 |
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395 | char record[FLEN_CARD], value[FLEN_VALUE], comm[FLEN_COMMENT];
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396 | string comment;
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397 | int nok = 0;
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398 | for(int kk=1; kk<=nkeys; kk++) {
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399 | status = 0;
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400 | fits_read_record(FitsPtr(), kk, record, &status);
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401 | FitsCheckStatus(status, "FitsInOutFile::GetHeaderRecords() Error(2): ");
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402 | int kclas = fits_get_keyclass(record);
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403 | if ( (kclas == TYP_STRUC_KEY) || (kclas == TYP_NULL_KEY) ) continue;
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404 | int len = 0;
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405 | status = 0;
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406 | fits_get_keyname(record, value, &len, &status);
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407 | if (status) continue;
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408 | string keyname = value;
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409 | status = 0;
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410 | fits_parse_value(record, value, comm, &status);
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411 | if (status) continue;
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412 | if (kclas == TYP_COMM_KEY) {
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413 | if (comment.length() > 0) comment += '\n';
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414 | comment += value;
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415 | continue;
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416 | }
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417 | char ktyp;
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418 | status = 0;
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419 | fits_get_keytype(value, &ktyp, &status);
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420 | if (status) continue;
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421 | switch (ktyp) {
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422 | case 'C' :
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423 | case 'L' : // Il faudra traiter le cas des nb complexes
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424 | case 'X' : // idem pour les valeurs logiques
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425 | dvl.SetS(keyname, value);
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426 | break;
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427 | case 'I' :
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428 | dvl.SetI(keyname, atoi(value));
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429 | break;
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430 | case 'F' :
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431 | dvl.SetD(keyname, atof(value));
|
---|
432 | break;
|
---|
433 | }
|
---|
434 | if (strlen(comm) > 0) {
|
---|
435 | string scom = comm;
|
---|
436 | dvl.SetComment(keyname, scom);
|
---|
437 | }
|
---|
438 | nok++;
|
---|
439 | }
|
---|
440 | if (comment.length() > 0) dvl.Comment() = comment;
|
---|
441 | return nok;
|
---|
442 | }
|
---|
443 |
|
---|
444 | /*-- Methode --*/
|
---|
445 | void FitsInOutFile::WriteKey(const char * kname, MuTyV const & mtv,
|
---|
446 | const char *comment)
|
---|
447 | {
|
---|
448 | CheckFitsPtr(FitsPtr());
|
---|
449 | char keyname[FLEN_KEYWORD], comm[FLEN_COMMENT], sval[FLEN_VALUE];
|
---|
450 | long lval;
|
---|
451 | double dval;
|
---|
452 | string s;
|
---|
453 |
|
---|
454 | keyname[0] = '\0';
|
---|
455 | strncpy(keyname, kname, FLEN_KEYWORD); keyname[FLEN_KEYWORD-1] = '\0';
|
---|
456 | comm[0] = '\0';
|
---|
457 | if (comm != NULL)
|
---|
458 | strncpy(comm, comment, FLEN_COMMENT); comm[FLEN_COMMENT-1] = '\0';
|
---|
459 | int status = 0;
|
---|
460 | switch (mtv.Type()) {
|
---|
461 | case MuTyV::MTVInteger :
|
---|
462 | lval = mtv.GetIntPart();
|
---|
463 | fits_write_key(FitsPtr(), TLONG, keyname, &lval, comm, &status);
|
---|
464 | break;
|
---|
465 | case MuTyV::MTVFloat :
|
---|
466 | dval = mtv.GetRealPart();
|
---|
467 | fits_write_key(FitsPtr(), TDOUBLE, keyname, &dval, comm, &status);
|
---|
468 | break;
|
---|
469 | case MuTyV::MTVString :
|
---|
470 | strncpy(sval, mtv.GetStringPointer()->c_str(), FLEN_VALUE);
|
---|
471 | keyname[FLEN_VALUE-1] = '\0';
|
---|
472 | fits_write_key(FitsPtr(), TSTRING, keyname, sval, comm, &status);
|
---|
473 | break;
|
---|
474 | default :
|
---|
475 | s = (string)mtv;
|
---|
476 | strncpy(sval, s.c_str(), FLEN_VALUE);
|
---|
477 | keyname[FLEN_VALUE-1] = '\0';
|
---|
478 | fits_write_key(FitsPtr(), TSTRING, keyname, sval, comm, &status);
|
---|
479 | break;
|
---|
480 | }
|
---|
481 | FitsCheckStatus(status, "FitsInOutFile::WriteKey() Error: ");
|
---|
482 | return;
|
---|
483 | }
|
---|
484 |
|
---|
485 | /*-- Methode --*/
|
---|
486 | int FitsInOutFile::WriteHeaderRecords(DVList & dvl)
|
---|
487 | {
|
---|
488 |
|
---|
489 | CheckFitsPtr(FitsPtr());
|
---|
490 | int status = 0;
|
---|
491 | DVList::ValList::const_iterator it;
|
---|
492 | for(it = dvl.Begin(); it != dvl.End(); it++)
|
---|
493 | WriteKey( (*it).first, (*it).second.elval, (*it).second.elcomm);
|
---|
494 | // Ecriture commentaires
|
---|
495 | return 0;
|
---|
496 |
|
---|
497 | }
|
---|
498 |
|
---|
499 | /*-- Methode --*/
|
---|
500 | void FitsInOutFile::Print(ostream& os, int lev) const
|
---|
501 | {
|
---|
502 | string mode;
|
---|
503 | if (mode_ == Fits_Create) mode = "Create";
|
---|
504 | else if (mode_ == Fits_RO) mode = "ReadOnly";
|
---|
505 | else mode = "ReadWrite";
|
---|
506 | os << " FitsInOutFile(FileName= " << fname_ << " Mode="
|
---|
507 | << mode << ") fitsioVers= " << cfitsioVersion() << endl;
|
---|
508 | os << " TotalNumberHDU= " << NbHDUs() << " CurrentHDU: Num= "
|
---|
509 | << CurrentHDU() << " Type= " << CurrentHDUTypeStr() << endl;
|
---|
510 |
|
---|
511 | return;
|
---|
512 | }
|
---|
513 |
|
---|
514 |
|
---|