| [787] | 1 | // This may look like C code, but it is really -*- C++ -*- | 
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|  | 2 | //      Base array class - Memory organisation management | 
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|  | 3 | //                     R. Ansari, C.Magneville   03/2000 | 
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|  | 4 |  | 
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|  | 5 | #ifndef BaseArray_SEEN | 
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|  | 6 | #define BaseArray_SEEN | 
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|  | 7 |  | 
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|  | 8 | #include "machdefs.h" | 
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|  | 9 | #include <math.h> | 
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|  | 10 | #include <iostream.h> | 
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|  | 11 | #include "anydataobj.h" | 
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|  | 12 | #include "dvlist.h" | 
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|  | 13 |  | 
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|  | 14 |  | 
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| [894] | 15 | //! Maximum number of dimensions for an array | 
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|  | 16 | /*! \anchor BASEARRAY_MAXNDIMS */ | 
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| [787] | 17 | #define BASEARRAY_MAXNDIMS  5 | 
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|  | 18 |  | 
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|  | 19 | namespace SOPHYA { | 
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|  | 20 |  | 
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|  | 21 | //   ------------ classe template Array ----------- | 
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| [890] | 22 | //! Base class for template arrays | 
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| [787] | 23 | class BaseArray : public AnyDataObj { | 
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|  | 24 | public: | 
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| [890] | 25 | //! To define Array or Matrix memory mapping | 
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|  | 26 | enum MemoryMapping { | 
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|  | 27 | AutoMemoryMapping = -1,  //!< define Auto Memory Mapping | 
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|  | 28 | SameMemoryMapping = 0,   //!< define Same Memory Mapping | 
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|  | 29 | CMemoryMapping = 1,      //!< define C Memory Mapping | 
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|  | 30 | FortranMemoryMapping = 2 //!< define Fortran Memory Mapping | 
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|  | 31 | }; | 
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|  | 32 | //! To define Vector type | 
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|  | 33 | enum VectorType { | 
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|  | 34 | AutoVectorType = -1,  //!< define Auto Vector Type | 
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|  | 35 | SameVectorType = 0,   //!< define Same Vector Type | 
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|  | 36 | ColumnVector = 1,     //!< define Column Vector Type | 
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|  | 37 | RowVector = 2         //!< define Row Vector Type | 
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|  | 38 | }; | 
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| [804] | 39 |  | 
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| [890] | 40 | // threshold for parallel routine call | 
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| [813] | 41 | static void    SetOpenMPSizeThreshold(uint_8 thr=200000); | 
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| [890] | 42 | //! Get Size threshold for parallel routine call | 
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| [813] | 43 | static inline uint_8 GetOpenMPSizeThreshold() { return openmp_size_threshold; } | 
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| [890] | 44 |  | 
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| [813] | 45 | static void    SetMaxPrint(uint_4 nprt=50, uint_4 lev=0); | 
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| [890] | 46 | //! Get maximum number of printed elements | 
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| [813] | 47 | static inline uint_4 GetMaxPrint() { return max_nprt_; } | 
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| [890] | 48 | //! Maximum number of printed elements arint level | 
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| [813] | 49 | static inline uint_4 GetPrintLevel() { return prt_lev_; } | 
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|  | 50 |  | 
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| [804] | 51 | static short   SetDefaultMemoryMapping(short mm=CMemoryMapping); | 
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| [890] | 52 | //! Get Default Memory Mapping | 
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| [804] | 53 | static inline short GetDefaultMemoryMapping() { return default_memory_mapping; } | 
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| [813] | 54 | static short   SetDefaultVectorType(short vt=ColumnVector); | 
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| [890] | 55 | //! Get Default Vector Type | 
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| [813] | 56 | static inline short GetDefaultVectorType() { return default_vector_type; } | 
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| [804] | 57 |  | 
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| [890] | 58 | // Creator / destructor | 
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| [787] | 59 | BaseArray(); | 
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|  | 60 | virtual ~BaseArray(); | 
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|  | 61 |  | 
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|  | 62 | // Returns true if ndim and sizes are equal | 
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|  | 63 | virtual bool CompareSizes(const BaseArray& a); | 
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|  | 64 |  | 
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| [890] | 65 | // Compacts \b size=1 array dimensions | 
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|  | 66 | virtual void CompactAllDim(); // suppresses all size==1 dimensions | 
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|  | 67 | virtual void CompactTrailingDim(); // suppresses size==1 dimensions after the last size>1 dimension | 
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| [787] | 68 |  | 
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|  | 69 | // Array dimensions | 
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| [890] | 70 | //! Return number of dimensions | 
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| [787] | 71 | inline uint_4 NbDimensions() const { return( ndim_ ); } | 
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|  | 72 |  | 
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| [890] | 73 | //! Return total size of the array | 
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| [787] | 74 | inline uint_8 Size() const { return(totsize_); } | 
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| [890] | 75 | //! Return size along the first dimension | 
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| [787] | 76 | inline uint_4 SizeX() const { return(size_[0]); } | 
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| [890] | 77 | //! Return size along the second dimension | 
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| [787] | 78 | inline uint_4 SizeY() const { return(size_[1]); } | 
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| [890] | 79 | //! Return size along the third dimension | 
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| [787] | 80 | inline uint_4 SizeZ() const { return(size_[2]); } | 
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| [890] | 81 | //! Return size along the \b ka th dimension | 
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| [787] | 82 | inline uint_4 Size(int ka) const { return(size_[CheckDI(ka,1)]); } | 
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|  | 83 |  | 
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|  | 84 | uint_4 MaxSizeKA() const ; | 
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|  | 85 |  | 
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| [890] | 86 | //! Get memory organization | 
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|  | 87 | inline short GetMemoryMapping() const | 
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|  | 88 | { return ( (marowi_ == 1) ? CMemoryMapping : FortranMemoryMapping) ; } | 
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|  | 89 | //! line index dimension | 
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|  | 90 | inline uint_4 RowsKA() const {return marowi_; } | 
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|  | 91 | //! line column dimension | 
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|  | 92 | inline uint_4 ColsKA() const {return macoli_; } | 
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|  | 93 | //! Index dimension of the elements of a vector | 
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|  | 94 | inline uint_4 VectKA() const {return veceli_; } | 
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| [813] | 95 | void          SetMemoryMapping(short mm=AutoMemoryMapping); | 
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| [804] | 96 |  | 
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| [890] | 97 | //! Get Vector type ( \b Line or \b Column vector ) | 
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| [813] | 98 | inline short  GetVectorType() const | 
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|  | 99 | { return((marowi_ == veceli_) ? ColumnVector : RowVector); } | 
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| [890] | 100 | void SetVectorType(short vt=AutoVectorType); | 
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| [813] | 101 |  | 
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| [890] | 102 | // memory organisation - packing information | 
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|  | 103 | //! return true if array is packed in memory | 
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| [787] | 104 | inline bool   IsPacked() const { return(moystep_ == 1); } | 
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| [890] | 105 | //! return true if array is packed along the first dimension | 
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| [787] | 106 | inline bool   IsPackedX() const { return(step_[0] == 1); } | 
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| [890] | 107 | //! return true if array is packed along the second dimension | 
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| [787] | 108 | inline bool   IsPackedY() const { return(step_[1] == 1); } | 
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| [890] | 109 | //! return true if array is packed along the third dimension | 
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| [787] | 110 | inline bool   IsPackedZ() const { return(step_[2] == 1); } | 
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| [890] | 111 | //! return true if array is packed along the \b ka th dimension | 
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| [787] | 112 | inline bool   IsPacked(int ka) const { return(step_[CheckDI(ka,2)] == 1); } | 
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|  | 113 |  | 
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| [890] | 114 | //! return the minimum step value along all the dimensions | 
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| [787] | 115 | inline uint_4 MinStep() const  { return(minstep_); } | 
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| [890] | 116 | //! return the average step value along all the dimensions | 
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| [787] | 117 | inline uint_4 AvgStep() const  { return(moystep_); } | 
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| [890] | 118 | //! return the step along the first dimension | 
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| [787] | 119 | inline uint_4 StepX() const { return(step_[0]); } | 
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| [890] | 120 | //! return the step along the second dimension | 
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| [787] | 121 | inline uint_4 StepY() const { return(step_[1]); } | 
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| [890] | 122 | //! return the step along the third dimension | 
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| [787] | 123 | inline uint_4 StepZ() const { return(step_[2]); } | 
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| [890] | 124 | //! return the step along the \b ka th dimension | 
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| [787] | 125 | inline uint_4 Step(int ka) const { return(step_[CheckDI(ka,3)]); } | 
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|  | 126 |  | 
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|  | 127 | uint_4 MinStepKA() const ; | 
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|  | 128 |  | 
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| [813] | 129 | // Offset of element ip | 
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| [787] | 130 | uint_8 Offset(uint_8 ip=0) const ; | 
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| [813] | 131 | // Offset of the i'th vector along axe ka | 
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|  | 132 | uint_8  Offset(uint_4 ka, uint_8 i) const ; | 
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| [787] | 133 | inline uint_8  Offset(uint_4 ix, uint_4 iy, uint_4 iz, uint_4 it=0, uint_4 iu=0) const; | 
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|  | 134 |  | 
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| [890] | 135 | // an abstract element acces methode | 
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| [787] | 136 | virtual double ValueAtPosition(uint_8 ip) const = 0; | 
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|  | 137 |  | 
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| [890] | 138 | // Impression, I/O, ... | 
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| [804] | 139 | void           Show(ostream& os, bool si=false) const; | 
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| [890] | 140 | //! Show information on \b cout | 
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| [804] | 141 | inline void    Show() const { Show(cout); } | 
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| [813] | 142 | virtual string InfoString() const; | 
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| [787] | 143 |  | 
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| [894] | 144 | // DVList info Object | 
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|  | 145 | DVList& Info(); | 
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| [787] | 146 |  | 
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|  | 147 | protected: | 
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|  | 148 | inline int CheckDI(int ka, int msg) const ; | 
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| [956] | 149 | inline void CheckBound(uint_4 ix, uint_4 iy, uint_4 iz, uint_4 it, uint_4 iu, int msg) const ; | 
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| [787] | 150 | // Changing Sizes/NDim ... return true if OK | 
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|  | 151 | bool UpdateSizes(uint_4 ndim, const uint_4 * siz, uint_4 step, uint_8 offset, string & exmsg); | 
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|  | 152 | bool UpdateSizes(uint_4 ndim, const uint_4 * siz, const uint_4 * step, uint_8 offset, string & exmsg); | 
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|  | 153 | bool UpdateSizes(const BaseArray& a, string & exmsg); | 
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| [804] | 154 | static uint_8 ComputeTotalSize(uint_4 ndim, const uint_4 * siz, uint_4 step, uint_8 offset) ; | 
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|  | 155 | //  Organisation memoire | 
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|  | 156 | static short SelectMemoryMapping(short mm); | 
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| [813] | 157 | static short SelectVectorType(short vt); | 
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|  | 158 | void UpdateMemoryMapping(short mm); | 
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| [804] | 159 | void UpdateMemoryMapping(BaseArray const & a, short mm); | 
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| [787] | 160 |  | 
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| [804] | 161 | // Pour Extraction de sous-tableau | 
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|  | 162 | virtual void UpdateSubArraySizes(BaseArray & ra, uint_4 ndim, uint_4 * siz, uint_4 * pos, uint_4 * step) const; | 
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|  | 163 |  | 
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| [894] | 164 | uint_4 ndim_; //!< number of dimensions of array | 
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|  | 165 | uint_4 size_[BASEARRAY_MAXNDIMS]; //!< array of the size in each dimension | 
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|  | 166 | uint_8 totsize_; //!< Total number of elements | 
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| [890] | 167 | //! two consecutive elements distance in a given dimension | 
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|  | 168 | uint_4 step_[BASEARRAY_MAXNDIMS]; | 
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| [894] | 169 | uint_4 minstep_; //!< minimal step (in any axes) | 
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|  | 170 | uint_4 moystep_; //!< mean step, if == 0 --\> non regular steps | 
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|  | 171 | uint_8 offset_;  //!< global offset -\> position of elem[0] in DataBlock | 
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|  | 172 | uint_4 marowi_; //!< For matrices, Row index in dimensions | 
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|  | 173 | uint_4 macoli_; //!< For matrices, Column index in dimensions | 
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|  | 174 | uint_4 veceli_; //!< For vectors, dimension index = marowi_/macoli_ (Row/Col vectors) | 
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|  | 175 | bool ck_memo_vt_; //!< if true, check MemoryOrg./VectorType for CompareSize | 
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|  | 176 | DVList* mInfo;    //!< Infos (variables) attached to the array | 
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| [787] | 177 |  | 
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| [894] | 178 | static char * ck_op_msg_[6]; //!< Operation messages for CheckDI() CheckBound() | 
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|  | 179 | static uint_4 max_nprt_; //!< maximum number of printed elements | 
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|  | 180 | static uint_4 prt_lev_;  //!< Print level | 
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|  | 181 | static short default_memory_mapping; //!< Default memory mapping | 
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|  | 182 | static short default_vector_type;    //!< Default vector type Row/Column | 
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|  | 183 | static uint_8 openmp_size_threshold; //!< Size limit for parallel routine calls | 
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| [787] | 184 | }; | 
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|  | 185 |  | 
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|  | 186 | // -------------------------------------------------- | 
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|  | 187 | //        Methodes inline de verification | 
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|  | 188 | // -------------------------------------------------- | 
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| [890] | 189 | //! to verify the compatibility of the dimension index | 
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| [787] | 190 | inline int BaseArray::CheckDI(int ka, int msg)  const | 
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|  | 191 | { | 
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| [956] | 192 | if ( (ka < 0) || ((uint_4) ka >= ndim_) ) { | 
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| [787] | 193 | string txt = "BaseArray::CheckDimensionIndex/Error ";   txt += ck_op_msg_[msg]; | 
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| [813] | 194 | throw(RangeCheckError(txt)); | 
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| [787] | 195 | } | 
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|  | 196 | return(ka); | 
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|  | 197 | } | 
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|  | 198 |  | 
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| [890] | 199 | //! to verify the compatibility of the indexes in all dimensions | 
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| [956] | 200 | inline void BaseArray::CheckBound(uint_4 ix, uint_4 iy, uint_4 iz, uint_4 it, uint_4 iu, int msg)  const | 
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| [787] | 201 | { | 
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|  | 202 | if ( (ix >= size_[0]) || (iy >= size_[1]) || (iz > size_[2]) || | 
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|  | 203 | (it >= size_[3]) || (iu >= size_[4]) ) { | 
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|  | 204 | string txt = "BaseArray::CheckArrayBound/Error ";   txt += ck_op_msg_[msg]; | 
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| [813] | 205 | throw(RangeCheckError(txt)); | 
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| [787] | 206 | } | 
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|  | 207 | return; | 
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|  | 208 | } | 
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|  | 209 |  | 
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|  | 210 |  | 
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| [813] | 211 |  | 
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| [787] | 212 | // -------------------------------------------------- | 
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|  | 213 | //        Position d'un element | 
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|  | 214 | // -------------------------------------------------- | 
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| [890] | 215 | //! Offset of element (ix,iy,iz,it,iu) | 
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| [787] | 216 | inline uint_8 BaseArray::Offset(uint_4 ix, uint_4 iy, uint_4 iz, uint_4 it, uint_4 iu) const | 
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|  | 217 | { | 
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|  | 218 | #ifdef SO_BOUNDCHECKING | 
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|  | 219 | CheckBound(ix, iy, iz, it, iu, 4); | 
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|  | 220 | #endif | 
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|  | 221 | return ( offset_+  ix*step_[0] + iy*step_[1] + iz*step_[2] + | 
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|  | 222 | it*step_[3] + iu*step_[4] ); | 
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|  | 223 | } | 
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|  | 224 |  | 
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|  | 225 |  | 
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|  | 226 | } // Fin du namespace | 
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|  | 227 |  | 
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|  | 228 | #endif | 
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