source: ZHANGProjects/ICOSIM/CPP/trunk/script/runwithfluka.sh.sample @ 2

#!/bin/bash

#Script to run ICOSIM++ with Fluka collimators
#Warning: do not forget to do: 'chmod +rx run.sh' the first time before running the script!!

PROJECT_PATH=/afs/cern.ch/user/j/jclivaz/private/ICOSIM++svn/icosimplusplus/trunk
FLUKASERVER_PATH=/afs/cern.ch/user/j/jclivaz/private/ICOSIM++
FLUKA_TEST_PATH=./trunk/samples
FLUKA_PATH=/afs/cern.ch/user/j/jclivaz/private/fluka
FLUKA_EXE=$FLUKASERVER_PATH/fluka-icosim++/fluka/flukaserver
COUPLING_PATH=$FLUKASERVER_PATH/fluka-icosim++
SRC_PATH=$PROJECT_PATH/source
SAMPLE_PATH=$PROJECT_PATH/sample
OUTPUT_PATH=$PROJECT_PATH/outputs
QUEUE=long

TMPDIR=
FLUKAFLAGS="-e ${FLUKA_EXE} -M 1"
RFIRST=1
RLAST=1
RUN_IN_CURRENT=false
CURRENT=$PWD

die() {
  echo >&2 "$1"
  exit $E_BADARGS
}



INFILE=$COUPLING_PATH/tools/$1.inp

if [ ! -f $INFILE ]; then
  die "The first argument must be the input file name (without .inp)"
fi

#if [ ! -d $TRACKER_PATH/build ]; then
 # die "Tracker build not found, please run make on the tracker folder"
#fi

if [ ! -f $FLUKA_EXE ]; then
  die "Fluka build not found, please run make on the fluka folder"
fi

PROJECT_NAME=$(echo $(basename $INFILE) | cut -d\- -f1 | cut -d\. -f1)


if [ $RFIRST -lt 1 ]; then
  echo "first dir < 1 !"
  exit 1
fi

if [ $RLAST -gt 100 ]; then
  echo "last dir > 99 !"
  exit 1
fi

cd $OUTPUT_PATH

if $RUN_IN_CURRENT ; then
  RUNDIR=$CURRENT
else
  RUNDIR=$(mktemp -d -p $OUTPUT_PATH ${1}.XXX) || exit 1
  cd $RUNDIR
fi


echo
echo " ** Running tracker simulation under directory:"
echo "    $RUNDIR"
echo
echo "    Cycles: $RFIRST - $RLAST"
echo


for ((  i = $RFIRST ;  i <= $RLAST;  i++  ))
do
  # numerical directory:
  mkdir $i || exit 1

  cd $i

  cp $SAMPLE_PATH/collimatorfile_${2}.csv collimatorfile_${2}.csv
  cp $SAMPLE_PATH/opticsfile_${2}.csv opticsfile_${2}.csv
  cp $SAMPLE_PATH/initial.dat initial.dat
  cp $SAMPLE_PATH/crystalinfo.csv crystalinfo.csv
  cp $SAMPLE_PATH/infoPlotLossSpectra.csv infoPlotLossSpectra.csv

 # Copy input file and replace the Random seed by the "cycle" number ($i)
  sed 's/^\(RANDOMIZ *\).*$/\1'"$i"'.0/' $INFILE > $(basename $INFILE)

  NAME=$(basename $RUNDIR).$i

cd $RUNDIR/$i

echo " ** Host: \$HOST" > $RUNDIR/server_$i.log
echo " ** Original directory: $RUNDIR/$i" >> $RUNDIR/server_$i.log

echo " \$HOST" > network.nfo

echo Running ICOSIM++ with Fluka

#Run ServerTestin background
echo " - Running Fluka in background..." >> $RUNDIR/server_$i.log
$FLUPRO/flutil/rfluka ${1} ${FLUKAFLAGS}  >> $RUNDIR/server_$i.log 2>&1 &

echo $i > seed.txt

#TMPDIR=\$(mktemp -d /tmp/tracker.XXXXXX) || exit 1

echo " ** Host: \$HOST" > $RUNDIR/tracker_$i.log
echo " ** Original directory: $RUNDIR/$i" >> $RUNDIR/tracker_$i.log
echo " ** Running in: \$TMPDIR" >> $RUNDIR/tracker_$i.log

#echo " - Moving tracker to temporary directory..." >> $RUNDIR/tracker_$i.log
#cp -R -L $RUNDIR/tracker/* \$TMPDIR/
#ln -s \$TMPDIR tracker


# Wait until FLUKA is initialized
while [ ! -f network.nfo ]; do
 echo "Fluka still not running, waiting..."
 sleep 10
done

#Fluka job started, wait until completely initialized
sleep 10

cd $SRC_PATH

#Run ICOSIM++ in foreground
echo " - Running the Tracker..." >> $RUNDIR/tracker_$i.log
./icosim++ $SAMPLE_PATH/collimatorfile_${2}.csv $RUNDIR >> $RUNDIR/tracker_$i.log 2>&1

cd $RUNDIR/$i

rm -rf \$TMPDIR

  cd $PROJECT_PATH
done

pkill flukaserver

echo End of the run

exit 0