| 1 | //
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| 2 | // ********************************************************************
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| 3 | // * License and Disclaimer *
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| 4 | // * *
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| 5 | // * The Geant4 software is copyright of the Copyright Holders of *
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| 6 | // * the Geant4 Collaboration. It is provided under the terms and *
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| 7 | // * conditions of the Geant4 Software License, included in the file *
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| 8 | // * LICENSE and available at http://cern.ch/geant4/license . These *
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| 9 | // * include a list of copyright holders. *
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| 10 | // * *
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| 11 | // * Neither the authors of this software system, nor their employing *
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| 12 | // * institutes,nor the agencies providing financial support for this *
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| 13 | // * work make any representation or warranty, express or implied, *
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| 14 | // * regarding this software system or assume any liability for its *
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| 15 | // * use. Please see the license in the file LICENSE and URL above *
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| 16 | // * for the full disclaimer and the limitation of liability. *
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| 17 | // * *
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| 18 | // * This code implementation is the result of the scientific and *
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| 19 | // * technical work of the GEANT4 collaboration. *
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| 20 | // * By using, copying, modifying or distributing the software (or *
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| 21 | // * any work based on the software) you agree to acknowledge its *
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| 22 | // * use in resulting scientific publications, and indicate your *
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| 23 | // * acceptance of all terms of the Geant4 Software license. *
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| 24 | // ********************************************************************
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| 25 | //
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| 26 | // $Id: G4DNAEmfietzoglouExcitationModel.cc,v 1.8 2009/08/13 11:32:47 sincerti Exp $
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| 27 | // GEANT4 tag $Name: geant4-09-03-cand-01 $
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| 28 | //
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| 29 |
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| 30 | #include "G4DNAEmfietzoglouExcitationModel.hh"
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| 31 |
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| 32 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
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| 33 |
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| 34 | using namespace std;
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| 35 |
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| 36 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
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| 37 |
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| 38 | G4DNAEmfietzoglouExcitationModel::G4DNAEmfietzoglouExcitationModel(const G4ParticleDefinition*,
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| 39 | const G4String& nam)
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| 40 | :G4VEmModel(nam),isInitialised(false)
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| 41 | {
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| 42 |
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| 43 | lowEnergyLimit = 8.23 * eV;
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| 44 | highEnergyLimit = 10 * MeV;
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| 45 | SetLowEnergyLimit(lowEnergyLimit);
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| 46 | SetHighEnergyLimit(highEnergyLimit);
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| 47 |
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| 48 | verboseLevel= 0;
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| 49 | // Verbosity scale:
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| 50 | // 0 = nothing
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| 51 | // 1 = warning for energy non-conservation
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| 52 | // 2 = details of energy budget
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| 53 | // 3 = calculation of cross sections, file openings, sampling of atoms
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| 54 | // 4 = entering in methods
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| 55 |
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| 56 | if (verboseLevel > 3)
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| 57 |
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| 58 | if( verboseLevel>0 )
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| 59 | {
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| 60 | G4cout << "Emfietzoglou Excitation model is constructed " << G4endl
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| 61 | << "Energy range: "
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| 62 | << lowEnergyLimit / eV << " eV - "
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| 63 | << highEnergyLimit / MeV << " MeV"
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| 64 | << G4endl;
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| 65 | }
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| 66 | }
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| 67 |
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| 68 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
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| 69 |
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| 70 | G4DNAEmfietzoglouExcitationModel::~G4DNAEmfietzoglouExcitationModel()
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| 71 | {}
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| 72 |
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| 73 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
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| 74 |
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| 75 | void G4DNAEmfietzoglouExcitationModel::Initialise(const G4ParticleDefinition* /*particle*/,
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| 76 | const G4DataVector& /*cuts*/)
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| 77 | {
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| 78 |
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| 79 | if (verboseLevel > 3)
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| 80 | G4cout << "Calling G4DNAEmfietzoglouExcitationModel::Initialise()" << G4endl;
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| 81 |
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| 82 | // Energy limits
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| 83 |
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| 84 | if (LowEnergyLimit() < lowEnergyLimit)
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| 85 | {
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| 86 | G4cout << "G4DNAEmfietzoglouExcitationModel: low energy limit increased from " <<
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| 87 | LowEnergyLimit()/eV << " eV to " << lowEnergyLimit/eV << " eV" << G4endl;
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| 88 | SetLowEnergyLimit(lowEnergyLimit);
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| 89 | }
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| 90 |
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| 91 | if (HighEnergyLimit() > highEnergyLimit)
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| 92 | {
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| 93 | G4cout << "G4DNAEmfietzoglouExcitationModel: high energy limit decreased from " <<
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| 94 | HighEnergyLimit()/MeV << " MeV to " << highEnergyLimit/MeV << " MeV" << G4endl;
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| 95 | SetHighEnergyLimit(highEnergyLimit);
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| 96 | }
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| 97 |
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| 98 | //
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| 99 |
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| 100 | nLevels = waterExcitation.NumberOfLevels();
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| 101 |
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| 102 | //
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| 103 | if( verboseLevel>0 )
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| 104 | {
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| 105 | G4cout << "Emfietzoglou Excitation model is initialized " << G4endl
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| 106 | << "Energy range: "
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| 107 | << LowEnergyLimit() / eV << " eV - "
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| 108 | << HighEnergyLimit() / MeV << " MeV"
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| 109 | << G4endl;
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| 110 | }
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| 111 |
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| 112 | if(!isInitialised)
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| 113 | {
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| 114 | isInitialised = true;
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| 115 |
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| 116 | if(pParticleChange)
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| 117 | fParticleChangeForGamma = reinterpret_cast<G4ParticleChangeForGamma*>(pParticleChange);
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| 118 | else
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| 119 | fParticleChangeForGamma = new G4ParticleChangeForGamma();
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| 120 | }
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| 121 |
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| 122 | // InitialiseElementSelectors(particle,cuts);
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| 123 |
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| 124 | // Test if water material
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| 125 |
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| 126 | flagMaterialIsWater= false;
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| 127 | densityWater = 0;
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| 128 |
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| 129 | const G4ProductionCutsTable* theCoupleTable = G4ProductionCutsTable::GetProductionCutsTable();
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| 130 |
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| 131 | if(theCoupleTable)
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| 132 | {
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| 133 | G4int numOfCouples = theCoupleTable->GetTableSize();
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| 134 |
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| 135 | if(numOfCouples>0)
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| 136 | {
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| 137 | for (G4int i=0; i<numOfCouples; i++)
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| 138 | {
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| 139 | const G4MaterialCutsCouple* couple = theCoupleTable->GetMaterialCutsCouple(i);
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| 140 | const G4Material* material = couple->GetMaterial();
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| 141 |
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| 142 | if (material->GetName() == "G4_WATER")
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| 143 | {
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| 144 | G4double density = material->GetAtomicNumDensityVector()[1];
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| 145 | flagMaterialIsWater = true;
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| 146 | densityWater = density;
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| 147 |
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| 148 | if (verboseLevel > 3)
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| 149 | G4cout << "****** Water material is found with density(cm^-3)=" << density/(cm*cm*cm) << G4endl;
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| 150 | }
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| 151 |
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| 152 | }
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| 153 |
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| 154 | } // if(numOfCouples>0)
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| 155 |
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| 156 | } // if (theCoupleTable)
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| 157 |
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| 158 | }
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| 159 |
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| 160 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
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| 161 |
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| 162 | G4double G4DNAEmfietzoglouExcitationModel::CrossSectionPerVolume(const G4Material*,
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| 163 | const G4ParticleDefinition* particleDefinition,
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| 164 | G4double ekin,
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| 165 | G4double,
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| 166 | G4double)
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| 167 | {
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| 168 | if (verboseLevel > 3)
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| 169 | G4cout << "Calling CrossSectionPerVolume() of G4DNAEmfietzoglouExcitationModel" << G4endl;
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| 170 |
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| 171 | // Calculate total cross section for model
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| 172 |
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| 173 | G4double sigma=0;
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| 174 |
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| 175 | if (flagMaterialIsWater)
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| 176 | {
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| 177 |
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| 178 | if (particleDefinition == G4Electron::ElectronDefinition())
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| 179 | {
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| 180 | if (ekin >= lowEnergyLimit && ekin < highEnergyLimit)
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| 181 | {
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| 182 | sigma = Sum(ekin);
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| 183 | }
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| 184 | }
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| 185 |
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| 186 | if (verboseLevel > 3)
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| 187 | {
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| 188 | G4cout << "---> Kinetic energy(eV)=" << ekin/eV << G4endl;
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| 189 | G4cout << " - Cross section per water molecule (cm^2)=" << sigma/cm/cm << G4endl;
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| 190 | G4cout << " - Cross section per water molecule (cm^-1)=" << sigma*densityWater/(1./cm) << G4endl;
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| 191 | }
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| 192 |
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| 193 | } // if (flagMaterialIsWater)
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| 194 |
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| 195 | return sigma*densityWater;
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| 196 | }
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| 197 |
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| 198 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
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| 199 |
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| 200 | void G4DNAEmfietzoglouExcitationModel::SampleSecondaries(std::vector<G4DynamicParticle*>* /*fvect*/,
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| 201 | const G4MaterialCutsCouple* /*couple*/,
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| 202 | const G4DynamicParticle* aDynamicElectron,
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| 203 | G4double,
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| 204 | G4double)
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| 205 | {
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| 206 |
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| 207 | if (verboseLevel > 3)
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| 208 | G4cout << "Calling SampleSecondaries() of G4DNAEmfietzoglouExcitationModel" << G4endl;
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| 209 |
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| 210 | G4double electronEnergy0 = aDynamicElectron->GetKineticEnergy();
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| 211 |
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| 212 | G4int level = RandomSelect(electronEnergy0);
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| 213 |
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| 214 | G4double excitationEnergy = waterExcitation.ExcitationEnergy(level);
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| 215 | G4double newEnergy = electronEnergy0 - excitationEnergy;
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| 216 |
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| 217 | if (electronEnergy0 < highEnergyLimit)
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| 218 | {
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| 219 | if (newEnergy >= lowEnergyLimit)
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| 220 | {
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| 221 | fParticleChangeForGamma->ProposeMomentumDirection(aDynamicElectron->GetMomentumDirection());
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| 222 | fParticleChangeForGamma->SetProposedKineticEnergy(newEnergy);
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| 223 | fParticleChangeForGamma->ProposeLocalEnergyDeposit(excitationEnergy);
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| 224 | }
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| 225 |
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| 226 | else
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| 227 | {
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| 228 | fParticleChangeForGamma->ProposeTrackStatus(fStopAndKill);
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| 229 | fParticleChangeForGamma->ProposeLocalEnergyDeposit(electronEnergy0);
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| 230 | }
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| 231 | }
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| 232 | }
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| 233 |
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| 234 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
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| 235 |
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| 236 | G4double G4DNAEmfietzoglouExcitationModel::PartialCrossSection(G4double t, G4int level)
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| 237 | {
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| 238 | // Aj T
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| 239 | // Sigma(T) = ------------- (Bj / T) ln(Cj ---) [1 - Bj / T]^Pj
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| 240 | // 2 pi alpha0 R
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| 241 | //
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| 242 | // Sigma is the macroscopic cross section = N sigma, where N = number of target particles per unit volume
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| 243 | // and sigma is the microscopic cross section
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| 244 | // T is the incoming electron kinetic energy
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| 245 | // alpha0 is the Bohr Radius (Bohr_radius)
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| 246 | // Aj, Bj, Cj & Pj are parameters that can be found in Emfietzoglou's papers
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| 247 | //
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| 248 | // From Phys. Med. Biol. 48 (2003) 2355-2371, D.Emfietzoglou,
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| 249 | // Monte Carlo Simulation of the energy loss of low energy electrons in liquid Water
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| 250 | //
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| 251 | // Scaling for macroscopic cross section: number of water moleculs per unit volume
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| 252 | // const G4double sigma0 = (10. / 3.343e22) * cm2;
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| 253 |
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| 254 | const G4double density = 3.34192e+19 * mm3;
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| 255 |
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| 256 | const G4double aj[]={0.0205, 0.0209, 0.0130, 0.0026, 0.0025};
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| 257 | const G4double cj[]={4.9801, 3.3850, 2.8095, 1.9242, 3.4624};
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| 258 | const G4double pj[]={0.4757, 0.3483, 0.4443, 0.3429, 0.4379};
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| 259 | const G4double r = 13.6 * eV;
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| 260 |
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| 261 | G4double sigma = 0.;
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| 262 |
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| 263 | G4double exc = waterExcitation.ExcitationEnergy(level);
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| 264 |
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| 265 | if (t >= exc)
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| 266 | {
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| 267 | G4double excitationSigma = ( aj[level] / (2.*pi*Bohr_radius))
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| 268 | * (exc / t)
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| 269 | * std::log(cj[level]*(t/r))
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| 270 | * std::pow((1.- (exc/t)), pj[level]);
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| 271 | sigma = excitationSigma / density;
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| 272 | }
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| 273 | return sigma;
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| 274 | }
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| 275 |
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| 276 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
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| 277 |
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| 278 | G4int G4DNAEmfietzoglouExcitationModel::RandomSelect(G4double k)
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| 279 | {
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| 280 | G4int i = nLevels;
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| 281 | G4double value = 0.;
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| 282 | std::deque<double> values;
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| 283 |
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| 284 | while (i > 0)
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| 285 | {
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| 286 | i--;
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| 287 | G4double partial = PartialCrossSection(k,i);
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| 288 | values.push_front(partial);
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| 289 | value += partial;
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| 290 | }
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| 291 |
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| 292 | value *= G4UniformRand();
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| 293 |
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| 294 | i = nLevels;
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| 295 |
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| 296 | while (i > 0)
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| 297 | {
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| 298 | i--;
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| 299 | if (values[i] > value) return i;
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| 300 | value -= values[i];
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| 301 | }
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| 302 |
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| 303 | return 0;
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| 304 | }
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| 305 |
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| 306 | //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
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| 307 |
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| 308 | G4double G4DNAEmfietzoglouExcitationModel::Sum(G4double k)
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| 309 | {
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| 310 | G4double totalCrossSection = 0.;
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| 311 |
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| 312 | for (G4int i=0; i<nLevels; i++)
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| 313 | {
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| 314 | totalCrossSection += PartialCrossSection(k,i);
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| 315 | }
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| 316 | return totalCrossSection;
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| 317 | }
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| 318 |
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