[507] | 1 | // |
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| 2 | // Analyse of Amas@Nancay runs by J.E Campagne (LAL) |
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| 3 | // Version 0: 1/6/2011 |
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| 4 | //----------------------------- |
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| 5 | |
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| 6 | // Utilisation de SOPHYA pour faciliter les tests ... |
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| 7 | #include "sopnamsp.h" |
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| 8 | #include "machdefs.h" |
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| 9 | |
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| 10 | #include <stdlib.h> |
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| 11 | #include <dirent.h> |
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[524] | 12 | #include <matharr.h> |
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[507] | 13 | |
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| 14 | // include standard c/c++ |
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| 15 | #include <iostream> |
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| 16 | #include <fstream> |
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| 17 | #include <string> |
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| 18 | #include <vector> |
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| 19 | #include <map> |
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| 20 | #include <functional> |
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| 21 | #include <algorithm> |
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| 22 | #include <numeric> |
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| 23 | #include <list> |
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| 24 | #include <exception> |
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| 25 | |
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| 26 | // include sophya mesure ressource CPU/memoire ... |
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| 27 | #include "resusage.h" |
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| 28 | #include "ctimer.h" |
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| 29 | #include "timing.h" |
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| 30 | #include "timestamp.h" |
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| 31 | #include "strutilxx.h" |
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| 32 | #include "ntuple.h" |
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| 33 | #include "fioarr.h" |
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| 34 | #include "tarrinit.h" |
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| 35 | #include "histinit.h" |
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| 36 | #include "fitsioserver.h" |
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| 37 | #include "fiosinit.h" |
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| 38 | #include "ppersist.h" |
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| 39 | |
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| 40 | |
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[598] | 41 | //~/private/work/AmasNancay/Objs/analyse -act redMeanONOFF -source Abell85 -date 20110428 -sca sca151675.sum.trans -specdir meancycle -specname mspecmtx -sigmaname sigspecmtx -npaq 25000 -numcycle 1,11 -debug 100 > & redMean.log |
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| 42 | |
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| 43 | |
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| 44 | |
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[507] | 45 | const sa_size_t NUMBER_OF_CHANNELS = 2; |
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| 46 | const sa_size_t NUMBER_OF_FREQ = 8192; |
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| 47 | const r_4 LOWER_FREQUENCY = 1250.0; //MHz |
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| 48 | const r_4 TOTAL_BANDWIDTH = 250.0; //MHz |
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| 49 | |
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| 50 | //decalration of non class members functions |
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| 51 | extern "C" { |
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| 52 | int Usage(bool); |
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| 53 | } |
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| 54 | |
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| 55 | |
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| 56 | //---------------------------------------------------------- |
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| 57 | //Utility fonctions |
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[595] | 58 | class median_of_empty_list_exception:public std::exception{ |
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| 59 | virtual const char* what() const throw() { |
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| 60 | return "Attempt to take the median of an empty list of numbers. " |
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| 61 | "The median of an empty list is undefined."; |
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| 62 | } |
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| 63 | }; |
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| 64 | template<class RandAccessIter> |
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| 65 | double median(RandAccessIter begin, RandAccessIter end) |
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| 66 | throw(median_of_empty_list_exception){ |
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| 67 | if(begin == end){ throw median_of_empty_list_exception(); } |
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| 68 | std::size_t size = end - begin; |
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| 69 | std::size_t middleIdx = size/2; |
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| 70 | RandAccessIter target = begin + middleIdx; |
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| 71 | std::nth_element(begin, target, end); |
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| 72 | |
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| 73 | if(size % 2 != 0){ //Odd number of elements |
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| 74 | return *target; |
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| 75 | }else{ //Even number of elements |
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| 76 | double a = *target; |
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| 77 | RandAccessIter targetNeighbor= target-1; |
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| 78 | std::nth_element(begin, targetNeighbor, end); |
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| 79 | return (a+*targetNeighbor)/2.0; |
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| 80 | } |
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| 81 | } |
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| 82 | |
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| 83 | //------------- |
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| 84 | |
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[507] | 85 | // Function for deleting pointers in map. |
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| 86 | template<class A, class B> |
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| 87 | struct DeleteMapFntor |
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| 88 | { |
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| 89 | // Overloaded () operator. |
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| 90 | // This will be called by for_each() function. |
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| 91 | bool operator()(pair<A,B> x) const |
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| 92 | { |
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| 93 | // Assuming the second item of map is to be |
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| 94 | // deleted. Change as you wish. |
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| 95 | delete x.second; |
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| 96 | return true; |
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| 97 | } |
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| 98 | }; |
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| 99 | //----- |
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| 100 | bool compare(const pair<string,r_4>& i, const pair<string,r_4>& j) { |
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| 101 | return i.second < j.second; |
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| 102 | } |
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| 103 | //----- |
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| 104 | sa_size_t round_sa(r_4 r) { |
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| 105 | return static_cast<sa_size_t>((r > 0.0) ? (r + 0.5) : (r - 0.5)); |
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| 106 | } |
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| 107 | //----- |
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| 108 | string StringToLower(string strToConvert){ |
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| 109 | //change each element of the string to lower case |
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| 110 | for(unsigned int i=0;i<strToConvert.length();i++) { |
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| 111 | strToConvert[i] = tolower(strToConvert[i]); |
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| 112 | } |
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| 113 | return strToConvert;//return the converted string |
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| 114 | } |
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| 115 | //----- |
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[523] | 116 | //JEC 22/9/11 comparison, not case sensitive to sort File liste START |
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| 117 | bool stringCompare( const string &left, const string &right ){ |
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| 118 | if( left.size() < right.size() ) |
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| 119 | return true; |
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[540] | 120 | ////////////POSSIBLY A BUG return false; |
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[523] | 121 | for( string::const_iterator lit = left.begin(), rit = right.begin(); lit != left.end() && rit != right.end(); ++lit, ++rit ) |
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| 122 | if( tolower( *lit ) < tolower( *rit ) ) |
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| 123 | return true; |
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| 124 | else if( tolower( *lit ) > tolower( *rit ) ) |
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| 125 | return false; |
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[540] | 126 | return false; ///////TO BE FIXED |
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[523] | 127 | }//JEC 22/9/11 comparison, not case sensitive to sort File liste END |
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| 128 | //----- |
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[507] | 129 | list<string> ListOfFileInDir(string dir, string filePettern) throw(string) { |
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| 130 | list<string> theList; |
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| 131 | |
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| 132 | |
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| 133 | DIR *dip; |
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| 134 | struct dirent *dit; |
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[523] | 135 | string msg; string fileName; |
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[507] | 136 | string fullFileName; |
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| 137 | size_t found; |
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| 138 | |
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| 139 | if ((dip=opendir(dir.c_str())) == NULL ) { |
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| 140 | msg = "opendir failed on directory "+dir; |
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| 141 | throw msg; |
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| 142 | } |
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| 143 | while ( (dit = readdir(dip)) != NULL ) { |
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| 144 | fileName = dit->d_name; |
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| 145 | found=fileName.find(filePettern); |
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| 146 | if (found != string::npos) { |
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| 147 | fullFileName = dir + "/"; |
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| 148 | fullFileName += fileName; |
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| 149 | theList.push_back(fullFileName); |
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| 150 | } |
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| 151 | }//eo while |
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| 152 | if (closedir(dip) == -1) { |
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| 153 | msg = "closedir failed on directory "+dir; |
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| 154 | throw msg; |
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| 155 | } |
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[523] | 156 | |
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| 157 | //JEC 22/9/11 START |
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| 158 | theList.sort(stringCompare); |
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| 159 | //JEC 22/9/11 END |
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| 160 | |
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[507] | 161 | return theList; |
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| 162 | } |
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| 163 | |
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| 164 | |
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| 165 | //Declaration of local classes |
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| 166 | //---------------------------------------------- |
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| 167 | //Process Interface |
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| 168 | class IProcess { |
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| 169 | public: |
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| 170 | IProcess() {} |
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| 171 | virtual ~IProcess() {} |
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| 172 | virtual int processCmd() throw(string) =0; |
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| 173 | }; |
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| 174 | //------------ |
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| 175 | //Common Process |
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| 176 | class ProcessBase : public IProcess { |
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| 177 | public: |
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| 178 | ProcessBase(); |
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| 179 | virtual ~ProcessBase(); |
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| 180 | void SetInputPath(const string& inputPath) {inputPath_ = inputPath;} |
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| 181 | void SetOutputPath(const string& outputPath) {outputPath_ = outputPath;} |
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| 182 | void SetSourceName(const string& sourceName) {sourceName_ = sourceName;} |
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| 183 | void SetDateOfRun(const string& dateOfRun) {dateOfRun_ = dateOfRun;} |
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| 184 | void SetSpectraDirectory(const string& spectraDirectory) {spectraDirectory_ = spectraDirectory;} |
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| 185 | void SetTypeOfFile(const string& typeOfFile) { typeOfFile_ = typeOfFile; } |
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| 186 | void SetNumCycle(const string& numcycle) {numcycle_ = numcycle; } |
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| 187 | void SetScaFileName(const string& scaFileName) { scaFileName_ =scaFileName; } |
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| 188 | |
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| 189 | void SetDebugLevel(const string& debuglev) { |
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| 190 | debuglev_ = atoi(debuglev.c_str()); |
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| 191 | } |
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| 192 | |
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| 193 | virtual int processCmd() throw(string); |
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| 194 | |
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| 195 | protected: |
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| 196 | string inputPath_; |
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| 197 | string outputPath_; |
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| 198 | string sourceName_; |
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| 199 | string dateOfRun_; |
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| 200 | string spectraDirectory_; |
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| 201 | string typeOfFile_; |
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| 202 | |
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| 203 | string numcycle_; //cycle numbers format="first,last" |
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| 204 | sa_size_t ifirstCycle_; |
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| 205 | sa_size_t ilastCycle_; |
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| 206 | |
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| 207 | |
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| 208 | uint_4 debuglev_; |
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| 209 | string scaFileName_; |
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| 210 | NTuple* scaTuple_; |
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| 211 | map<sa_size_t,sa_size_t> idCycleInTuple_; |
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| 212 | }; |
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| 213 | ProcessBase::ProcessBase() { |
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| 214 | scaTuple_ = 0; |
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| 215 | } |
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| 216 | ProcessBase::~ProcessBase() { |
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| 217 | if (scaTuple_) delete scaTuple_; |
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| 218 | scaTuple_ = 0; |
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| 219 | } |
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| 220 | //------------ |
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| 221 | //Process ON/OFF data |
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| 222 | //------------ |
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| 223 | class ProcessONOFFData : public ProcessBase { |
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| 224 | protected: |
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| 225 | string freqBAOCalibration_;//string MHz |
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| 226 | public: |
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| 227 | ProcessONOFFData(){} |
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| 228 | virtual ~ProcessONOFFData(){} |
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| 229 | |
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| 230 | void SetFreqBAOCalibration(const string& freqBAOCalibration) { |
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| 231 | freqBAOCalibration_ = freqBAOCalibration; |
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| 232 | } |
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| 233 | |
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| 234 | virtual int processCmd() throw(string); |
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| 235 | }; |
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[524] | 236 | |
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[593] | 237 | |
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[507] | 238 | //------------ |
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[524] | 239 | //Process ON/OFF Raw data |
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| 240 | //------------ |
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| 241 | class ProcessONOFFRawData : public ProcessBase { |
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| 242 | |
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| 243 | public: |
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| 244 | ProcessONOFFRawData(){} |
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| 245 | virtual ~ProcessONOFFRawData(){} |
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| 246 | |
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| 247 | virtual int processCmd() throw(string); |
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| 248 | }; |
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| 249 | |
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| 250 | //------------ |
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[593] | 251 | //Process ON/OFF data treated with the mspec (specmfib) => no filtering at all: paquets & freq. |
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| 252 | //------------ |
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| 253 | class ProcessONOFFMeanData : public ProcessBase { |
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| 254 | |
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| 255 | public: |
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| 256 | ProcessONOFFMeanData(){} |
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| 257 | virtual ~ProcessONOFFMeanData(){} |
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| 258 | |
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| 259 | virtual int processCmd() throw(string); |
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| 260 | }; |
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| 261 | |
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[598] | 262 | //------------ |
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| 263 | //Process ON/OFF data treated with the mspec (specmfib) => no filtering at all: paquets & freq. |
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| 264 | //------------ |
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| 265 | class ProcessONOFFReducedMeanData : public ProcessBase { |
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| 266 | protected: |
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| 267 | string sigma2FileName_; //name of the file which contains the sigma2 |
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| 268 | string nPaqPerWin_; // number of paquets used for mean and sigma2 computations 'cf. proc_specmfib' |
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| 269 | r_4 valNPaqPerWin_; // value |
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[593] | 270 | |
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[598] | 271 | public: |
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| 272 | ProcessONOFFReducedMeanData(){} |
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| 273 | virtual ~ProcessONOFFReducedMeanData(){} |
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| 274 | |
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| 275 | void SetSigma2FileName(const string& val) {sigma2FileName_ = val;} |
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| 276 | void SetNPaqPerWin(const string& val) { |
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| 277 | nPaqPerWin_ = val; |
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| 278 | valNPaqPerWin_ = atof(val.c_str()); |
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| 279 | } |
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| 280 | |
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| 281 | virtual int processCmd() throw(string); |
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| 282 | }; |
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| 283 | |
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| 284 | |
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[593] | 285 | //------------ |
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[598] | 286 | //Process ON/OFF data treated with the gain (specmfib) => filtering paquets only by default |
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| 287 | //------------ |
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| 288 | class ProcessONOFFReducedMedianData : public ProcessBase { |
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| 289 | protected: |
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| 290 | string nPaqPerWin_; // number of paquets used for mean and sigma2 computations 'cf. proc_specmfib' |
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| 291 | r_4 valNPaqPerWin_; // value |
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| 292 | |
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| 293 | public: |
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| 294 | ProcessONOFFReducedMedianData(){} |
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| 295 | virtual ~ProcessONOFFReducedMedianData(){} |
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| 296 | |
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| 297 | void SetNPaqPerWin(const string& val) { |
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| 298 | nPaqPerWin_ = val; |
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| 299 | valNPaqPerWin_ = atof(val.c_str()); |
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| 300 | } |
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| 301 | |
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| 302 | virtual int processCmd() throw(string); |
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| 303 | }; |
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| 304 | |
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| 305 | |
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| 306 | //------------ |
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[507] | 307 | //Process Gain |
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| 308 | //------------ |
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| 309 | class ProcessGain : public ProcessBase { |
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| 310 | protected: |
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| 311 | string mode_; //mode of data taken for gain computation On || Off |
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| 312 | public: |
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| 313 | ProcessGain(){} |
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| 314 | virtual ~ProcessGain(){} |
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| 315 | |
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| 316 | void SetMode(const string& mode) {mode_ = mode;} |
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| 317 | |
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| 318 | virtual int processCmd() throw(string); |
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| 319 | }; |
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| 320 | //------------ |
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| 321 | //Process Calibration |
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| 322 | //------------ |
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| 323 | class ProcessCalibration : public ProcessBase { |
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| 324 | protected: |
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| 325 | string option_; //option of calibration procedure |
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| 326 | string freqBAOCalibration_;//string MHz |
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| 327 | r_4 valfreqBAOCalibration_; //value MHz |
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| 328 | string bandWidthBAOCalibration_;//string MHz |
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| 329 | r_4 valbandWidthBAOCalibration_;//value MHz |
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| 330 | |
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| 331 | sa_size_t lowerFreqBin_; |
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| 332 | sa_size_t upperFreqBin_; |
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| 333 | |
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| 334 | public: |
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| 335 | ProcessCalibration() {} |
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| 336 | virtual ~ProcessCalibration(){} |
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| 337 | |
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| 338 | void SetOption(const string& option) {option_ = option;} |
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| 339 | void SetFreqBAOCalibration(const string& freqBAOCalibration) { |
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| 340 | freqBAOCalibration_ = freqBAOCalibration; |
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| 341 | valfreqBAOCalibration_ = atof(freqBAOCalibration_.c_str()); |
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| 342 | } |
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| 343 | void SetBandWidthBAOCalibration(const string& bandWidthBAOCalibration) { |
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| 344 | bandWidthBAOCalibration_ = bandWidthBAOCalibration; |
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| 345 | valbandWidthBAOCalibration_ = atof(bandWidthBAOCalibration_.c_str()); |
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| 346 | } |
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| 347 | |
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| 348 | void ComputeLowerUpperFreqBin(); |
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| 349 | |
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| 350 | virtual int processCmd() throw(string); |
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| 351 | }; |
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| 352 | void ProcessCalibration::ComputeLowerUpperFreqBin() { |
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| 353 | sa_size_t c0 = round_sa(NUMBER_OF_FREQ*(valfreqBAOCalibration_-LOWER_FREQUENCY)/TOTAL_BANDWIDTH); |
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| 354 | sa_size_t dc = round_sa(NUMBER_OF_FREQ*valbandWidthBAOCalibration_/TOTAL_BANDWIDTH); |
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| 355 | lowerFreqBin_ = c0-dc/2; |
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| 356 | upperFreqBin_ = c0+dc/2; |
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| 357 | } |
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| 358 | //---------------------------------------------------- |
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| 359 | int main(int narg, char* arg[]) |
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| 360 | { |
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| 361 | |
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| 362 | //Init process types |
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| 363 | map<string,IProcess*> process; |
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[598] | 364 | process["redMedianONOFF"] = new ProcessONOFFReducedMedianData(); //JEC 8/11/11 |
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| 365 | process["redMeanONOFF"] = new ProcessONOFFReducedMeanData(); //JEC 8/11/11 |
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[593] | 366 | process["meanONOFF"] = new ProcessONOFFMeanData(); //JEC 27/10/11 |
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| 367 | process["rawOnOff"] = new ProcessONOFFRawData(); |
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[507] | 368 | process["dataOnOff"] = new ProcessONOFFData(); |
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| 369 | process["gain"] = new ProcessGain(); |
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| 370 | process["calib"] = new ProcessCalibration(); |
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| 371 | |
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| 372 | //Init Sophya related modules |
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| 373 | // SophyaInit(); |
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| 374 | TArrayInitiator _inia; //nneded for TArray persistancy |
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| 375 | FitsIOServerInit(); //needed for input file |
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| 376 | |
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| 377 | //message used in Exceptions |
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| 378 | string msg; |
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| 379 | |
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| 380 | //Return code |
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| 381 | int rc = 0; |
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| 382 | |
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| 383 | //Arguments managements |
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| 384 | if ((narg>1)&&(strcmp(arg[1],"-h")==0)) return Usage(false); |
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| 385 | if (narg<11) return Usage(true); |
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| 386 | |
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| 387 | string action; |
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| 388 | string inputPath = "."; |
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| 389 | string outputPath = "."; |
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| 390 | string sourceName; |
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| 391 | string scaFile; |
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| 392 | string dateOfRun; |
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| 393 | string spectraDirectory; |
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| 394 | string freqBAOCalib = ""; |
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| 395 | string bandWidthBAOCalib = ""; |
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| 396 | string debuglev = "0"; |
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| 397 | string mode = ""; |
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| 398 | string numcycle; |
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| 399 | string calibrationOpt = ""; |
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[598] | 400 | string nPaqPerWin = ""; |
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[507] | 401 | |
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| 402 | string typeOfFile="medfiltmtx"; |
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[598] | 403 | string secondTypeOfFile=""; //valid for ProcessONOFFReducedMeanData JEC 8/11/11 |
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[507] | 404 | |
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| 405 | // bool okarg=false; |
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| 406 | int ka=1; |
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| 407 | while (ka<(narg-1)) { |
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[584] | 408 | cout << "Debug arglist: <" << arg[ka] <<">" << endl; |
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[507] | 409 | if (strcmp(arg[ka],"-debug")==0) { |
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| 410 | debuglev=arg[ka+1]; |
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| 411 | ka+=2; |
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| 412 | } |
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[523] | 413 | else if (strcmp(arg[ka],"-act")==0) { |
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[507] | 414 | action=arg[ka+1]; |
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| 415 | ka+=2; |
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| 416 | } |
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[523] | 417 | else if (strcmp(arg[ka],"-inPath")==0) { |
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[507] | 418 | inputPath=arg[ka+1]; |
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| 419 | ka+=2; |
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| 420 | } |
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[523] | 421 | else if (strcmp(arg[ka],"-outPath")==0) { |
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[507] | 422 | outputPath=arg[ka+1]; |
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| 423 | ka+=2; |
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| 424 | } |
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| 425 | else if (strcmp(arg[ka],"-source")==0) { |
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| 426 | sourceName=arg[ka+1]; |
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| 427 | ka+=2; |
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| 428 | } |
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| 429 | else if (strcmp(arg[ka],"-sca")==0) { |
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| 430 | scaFile=arg[ka+1]; |
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| 431 | ka+=2; |
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| 432 | } |
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| 433 | else if (strcmp(arg[ka],"-date")==0) { |
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| 434 | dateOfRun=arg[ka+1]; |
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| 435 | ka+=2; |
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| 436 | } |
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| 437 | else if (strcmp(arg[ka],"-specdir")==0) { |
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| 438 | spectraDirectory=arg[ka+1]; |
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| 439 | ka+=2; |
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| 440 | } |
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| 441 | else if (strcmp(arg[ka],"-specname")==0) { |
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| 442 | typeOfFile=arg[ka+1]; |
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| 443 | ka+=2; |
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| 444 | } |
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[598] | 445 | else if (strcmp(arg[ka],"-sigmaname")==0) { |
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| 446 | secondTypeOfFile=arg[ka+1]; |
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| 447 | ka+=2; |
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| 448 | } |
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| 449 | else if (strcmp(arg[ka],"-npaq")==0) { |
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| 450 | nPaqPerWin=arg[ka+1]; |
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| 451 | ka+=2; |
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| 452 | } |
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[507] | 453 | else if (strcmp(arg[ka],"-freqBAOCalib")==0) { |
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| 454 | freqBAOCalib = arg[ka+1]; |
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| 455 | ka+=2; |
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| 456 | } |
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| 457 | else if (strcmp(arg[ka],"-bwBAOCalib")==0) { |
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| 458 | bandWidthBAOCalib = arg[ka+1]; |
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| 459 | ka+=2; |
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| 460 | } |
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| 461 | else if (strcmp(arg[ka],"-mode")==0) { |
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| 462 | mode =arg[ka+1]; |
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| 463 | ka+=2; |
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| 464 | } |
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| 465 | else if (strcmp(arg[ka],"-numcycle")==0) { |
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| 466 | numcycle =arg[ka+1]; |
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| 467 | ka+=2; |
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| 468 | } |
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| 469 | else if (strcmp(arg[ka],"-calibopt")==0) { |
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| 470 | calibrationOpt =arg[ka+1]; |
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| 471 | ka+=2; |
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| 472 | } |
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| 473 | else ka++; |
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| 474 | }//eo while |
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| 475 | |
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| 476 | |
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[523] | 477 | //JEC 21/9/11 Give the input parameters START |
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[524] | 478 | cout << "Dump Iiitial parameters ............" << endl; |
---|
| 479 | cout << " action = " << action << "\n" |
---|
[523] | 480 | << " inputPath = " << inputPath << "\n" |
---|
| 481 | << " outputPath = " << outputPath << "\n" |
---|
| 482 | << " sourceName = " << sourceName << "\n" |
---|
| 483 | << " scaFile = " << scaFile << "\n" |
---|
| 484 | << " dateOfRun = " << dateOfRun << "\n" |
---|
| 485 | << " spectraDirectory = " << spectraDirectory << "\n" |
---|
[593] | 486 | << " spectraName = " << typeOfFile << "\n" |
---|
[598] | 487 | << " sigmaName = " << secondTypeOfFile << "\n" |
---|
| 488 | << " nPaqPerWin = " << nPaqPerWin << "\n" |
---|
[523] | 489 | << " freqBAOCalib = " << freqBAOCalib << "\n" |
---|
| 490 | << " bandWidthBAOCalib = " << bandWidthBAOCalib << "\n" |
---|
[598] | 491 | << " debug = " << debuglev << "\n" |
---|
[523] | 492 | << " mode = " << mode << "\n" |
---|
| 493 | << " numcycle = " << numcycle << "\n" |
---|
| 494 | << " calibrationOpt = " << calibrationOpt << endl; |
---|
[524] | 495 | cout << "...................................." << endl; |
---|
[523] | 496 | //JEC 21/9/11 Give the input parameters END |
---|
[507] | 497 | |
---|
[523] | 498 | |
---|
[507] | 499 | try { |
---|
| 500 | //verification of action |
---|
| 501 | if(process.find(action) == process.end()) { |
---|
| 502 | msg = "action "; |
---|
| 503 | msg += action + " not valid... FATAL"; |
---|
| 504 | rc = 999; |
---|
| 505 | throw msg; |
---|
| 506 | } |
---|
| 507 | |
---|
| 508 | |
---|
| 509 | // |
---|
| 510 | //Process initialisation... |
---|
| 511 | // |
---|
| 512 | try { |
---|
| 513 | ProcessBase* procbase = dynamic_cast<ProcessBase*>(process[action]); |
---|
| 514 | if (procbase == 0) { |
---|
| 515 | msg= "action "; |
---|
| 516 | msg += action + "Not a <process base> type...FATAL"; |
---|
| 517 | rc = 999; |
---|
| 518 | throw msg; |
---|
| 519 | } |
---|
| 520 | procbase->SetInputPath(inputPath); |
---|
| 521 | procbase->SetOutputPath(outputPath); |
---|
| 522 | |
---|
| 523 | if ("" == sourceName) { |
---|
| 524 | msg = "(FATAL) missingsourceName for action " + action; |
---|
| 525 | Usage(true); |
---|
| 526 | throw msg; |
---|
| 527 | } |
---|
| 528 | procbase->SetSourceName(sourceName); |
---|
| 529 | |
---|
| 530 | if ("" == dateOfRun) { |
---|
| 531 | msg = "(FATAL) missing dateOfRun for action " + action; |
---|
| 532 | Usage(true); |
---|
| 533 | throw msg; |
---|
| 534 | } |
---|
| 535 | procbase->SetDateOfRun(dateOfRun); |
---|
| 536 | |
---|
| 537 | |
---|
| 538 | if ("" == spectraDirectory) { |
---|
| 539 | msg = "(FATAL) missing spectraDirectory for action " + action; |
---|
| 540 | Usage(true); |
---|
| 541 | throw msg; |
---|
| 542 | } |
---|
| 543 | procbase->SetSpectraDirectory(spectraDirectory); |
---|
| 544 | |
---|
| 545 | if ("" == scaFile) { |
---|
| 546 | msg = "(FATAL) missing scaFile for action " + action; |
---|
| 547 | Usage(true); |
---|
| 548 | throw msg; |
---|
| 549 | } |
---|
| 550 | procbase->SetScaFileName(scaFile); |
---|
| 551 | |
---|
| 552 | if ("" == numcycle) { |
---|
| 553 | msg = "(FATAL) missing cycle number for action " + action; |
---|
| 554 | Usage(true); |
---|
| 555 | throw msg; |
---|
| 556 | } |
---|
| 557 | procbase->SetNumCycle(numcycle); |
---|
| 558 | |
---|
| 559 | |
---|
| 560 | procbase->SetTypeOfFile(typeOfFile); |
---|
| 561 | |
---|
| 562 | procbase->SetDebugLevel(debuglev); |
---|
| 563 | } |
---|
| 564 | catch(exception& e){ |
---|
| 565 | throw e.what(); |
---|
| 566 | } |
---|
| 567 | |
---|
[524] | 568 | //JEC 22/9/11 Make ON-OFF analysis WO any calibration START |
---|
| 569 | // try { |
---|
| 570 | // ProcessONOFFRawData* procRawdata = dynamic_cast<ProcessONOFFRawData*>(process[action]); |
---|
| 571 | // } |
---|
| 572 | // catch(exception& e){ |
---|
| 573 | // throw e.what(); |
---|
| 574 | // } |
---|
| 575 | //JEC 22/9/11 Make ON-OFF analysis WO any calibration END |
---|
| 576 | |
---|
[598] | 577 | //JEC 8/11/11 Start |
---|
| 578 | try { |
---|
| 579 | ProcessONOFFReducedMeanData* procdata=dynamic_cast<ProcessONOFFReducedMeanData*>(process[action]); |
---|
| 580 | if (procdata) { |
---|
| 581 | if (secondTypeOfFile == ""){ |
---|
| 582 | msg = "(FATAL) missing file of the sigmas for action " + action; |
---|
| 583 | Usage(true); |
---|
| 584 | throw msg; |
---|
| 585 | } |
---|
| 586 | if (nPaqPerWin == ""){ |
---|
| 587 | msg = "(FATAL) missing number of paquets per window for action " + action; |
---|
| 588 | Usage(true); |
---|
| 589 | throw msg; |
---|
| 590 | } |
---|
| 591 | procdata->SetSigma2FileName(secondTypeOfFile); |
---|
| 592 | procdata->SetNPaqPerWin(nPaqPerWin); |
---|
| 593 | } |
---|
| 594 | } |
---|
| 595 | catch(exception& e){ |
---|
| 596 | throw e.what(); |
---|
| 597 | } |
---|
| 598 | //JEC 8/11/11 End |
---|
[524] | 599 | |
---|
[598] | 600 | //JEC 8/11/11 Start |
---|
[507] | 601 | try { |
---|
[598] | 602 | ProcessONOFFReducedMedianData* procdata=dynamic_cast<ProcessONOFFReducedMedianData*>(process[action]); |
---|
| 603 | if (procdata) { |
---|
| 604 | if (nPaqPerWin == ""){ |
---|
| 605 | msg = "(FATAL) missing number of paquets per window for action " + action; |
---|
| 606 | Usage(true); |
---|
| 607 | throw msg; |
---|
| 608 | } |
---|
| 609 | procdata->SetNPaqPerWin(nPaqPerWin); |
---|
| 610 | } |
---|
| 611 | } |
---|
| 612 | catch(exception& e){ |
---|
| 613 | throw e.what(); |
---|
| 614 | } |
---|
| 615 | //JEC 8/11/11 End |
---|
| 616 | |
---|
| 617 | |
---|
| 618 | |
---|
| 619 | try { |
---|
[507] | 620 | ProcessONOFFData* procdata = dynamic_cast<ProcessONOFFData*>(process[action]); |
---|
| 621 | if (procdata) { |
---|
| 622 | if (freqBAOCalib == "") { |
---|
| 623 | msg = "(FATAL) missing calibration BAO frequency for action " + action; |
---|
| 624 | Usage(true); |
---|
| 625 | throw msg; |
---|
| 626 | } |
---|
| 627 | procdata->SetFreqBAOCalibration(freqBAOCalib); |
---|
| 628 | } |
---|
| 629 | } |
---|
| 630 | catch(exception& e){ |
---|
| 631 | throw e.what(); |
---|
| 632 | } |
---|
| 633 | |
---|
| 634 | |
---|
| 635 | try { |
---|
| 636 | ProcessGain* procgain = dynamic_cast<ProcessGain*>(process[action]); |
---|
| 637 | if(procgain) { |
---|
| 638 | if (mode == "") { |
---|
| 639 | msg = "(FATAL) missing mode-type for action " + action; |
---|
| 640 | Usage(true); |
---|
| 641 | throw msg; |
---|
| 642 | } |
---|
| 643 | procgain->SetMode(mode); |
---|
| 644 | } |
---|
| 645 | } |
---|
| 646 | catch(exception& e){ |
---|
| 647 | throw e.what(); |
---|
| 648 | } |
---|
| 649 | |
---|
| 650 | try { |
---|
| 651 | ProcessCalibration* proccalib = dynamic_cast<ProcessCalibration*>(process[action]); |
---|
| 652 | if(proccalib) { |
---|
| 653 | if (calibrationOpt == "") { |
---|
| 654 | msg = "(FATAL) missing calibration option"; |
---|
| 655 | Usage(true); |
---|
| 656 | throw msg; |
---|
| 657 | } |
---|
| 658 | if (freqBAOCalib == "") { |
---|
| 659 | msg = "(FATAL) missing calibration BAO frequency for action " + action; |
---|
| 660 | Usage(true); |
---|
| 661 | throw msg; |
---|
| 662 | } |
---|
| 663 | if (bandWidthBAOCalib == "") { |
---|
| 664 | msg = "(FATAL) missing calibration BAO frequency band width for action " + action; |
---|
| 665 | Usage(true); |
---|
| 666 | throw msg; |
---|
| 667 | } |
---|
| 668 | proccalib->SetOption(calibrationOpt); |
---|
| 669 | proccalib->SetFreqBAOCalibration(freqBAOCalib); |
---|
| 670 | proccalib->SetBandWidthBAOCalibration(bandWidthBAOCalib); |
---|
| 671 | proccalib->ComputeLowerUpperFreqBin(); |
---|
| 672 | } |
---|
| 673 | } |
---|
| 674 | catch(exception& e){ |
---|
| 675 | throw e.what(); |
---|
| 676 | } |
---|
| 677 | |
---|
| 678 | // |
---|
| 679 | //execute command |
---|
| 680 | // |
---|
| 681 | rc = process[action]->processCmd(); |
---|
| 682 | |
---|
| 683 | } |
---|
| 684 | catch (std::exception& sex) { |
---|
| 685 | cerr << "\n analyse.cc std::exception :" << (string)typeid(sex).name() |
---|
| 686 | << "\n msg= " << sex.what() << endl; |
---|
| 687 | rc = 78; |
---|
| 688 | } |
---|
| 689 | catch ( string str ) { |
---|
| 690 | cerr << "analyse.cc Exception raised: " << str << endl; |
---|
| 691 | } |
---|
| 692 | catch (...) { |
---|
| 693 | cerr << " analyse.cc catched unknown (...) exception " << endl; |
---|
| 694 | rc = 79; |
---|
| 695 | } |
---|
| 696 | |
---|
| 697 | |
---|
| 698 | |
---|
| 699 | |
---|
| 700 | cout << ">>>> analyse.cc ------- END ----------- RC=" << rc << endl; |
---|
| 701 | |
---|
| 702 | //Delete processes |
---|
| 703 | for_each(process.begin(),process.end(), DeleteMapFntor<string,IProcess*>()); |
---|
| 704 | |
---|
| 705 | return rc; |
---|
| 706 | } |
---|
| 707 | |
---|
| 708 | //--------------------------------------------------- |
---|
| 709 | int Usage(bool flag) { |
---|
| 710 | cout << "Analyse.cc usage...." << endl; |
---|
[598] | 711 | cout << "analyse -act <action_type>: redMeanONOFF, meanONOFF,dataOnOff, rawOnOff, gain, calib\n" |
---|
[507] | 712 | << " -inPath <path for input files: default='.'>\n" |
---|
| 713 | << " -outPath <path for output files: default='.'>\n" |
---|
| 714 | << " -source <source name> \n" |
---|
| 715 | << " -date <YYYYMMDD>\n" |
---|
| 716 | << " -sca <file name scaXYZ.sum.trans>\n" |
---|
| 717 | << " -specdir <generic directory name of spectra fits files>\n" |
---|
| 718 | << " -specname <generic name of spectra fits files>\n" |
---|
[598] | 719 | << " -sigmaname <generic name of the sigma2 fits files>\n" |
---|
| 720 | << " valid for redMeanONOFF\n" |
---|
| 721 | << " -npaq <number of paquest per windows for mean&sigma2 computaion (brproc)>\n" |
---|
| 722 | << " valid for redMeanONOFF\n" |
---|
[507] | 723 | << " -freqBAOCalib <freq in MHZ> freq. of calibration BAO\n" |
---|
[514] | 724 | << " valid for act=dataOnOff\n" |
---|
[507] | 725 | << " -bwBAOCalib <band width MHz> band width arround central freq. for calibration BAO\n" |
---|
| 726 | << " valid for act=calib\n" |
---|
| 727 | << " -mode <mode_type>:\n" |
---|
| 728 | << " valid for act=gain, mode_type: On, Off\n" |
---|
| 729 | << " -numcycle <number>,<number>:\n" |
---|
| 730 | << " valid for all actions" |
---|
| 731 | << " -calibopt <option>:\n" |
---|
| 732 | << " valid for act=calib: indiv OR mean (NOT USED)" |
---|
[593] | 733 | << " -debug <number> [0=default]\n" |
---|
[507] | 734 | << " 1: normal print\n" |
---|
| 735 | << " 2: save intermediate spectra\n" |
---|
| 736 | << endl; |
---|
| 737 | if (flag) { |
---|
| 738 | cout << "use <path>/analyse -h for detailed instructions" << endl; |
---|
| 739 | return 5; |
---|
| 740 | } |
---|
| 741 | return 1; |
---|
| 742 | } |
---|
| 743 | |
---|
| 744 | int ProcessBase::processCmd() throw(string) { |
---|
| 745 | int rc =0; |
---|
| 746 | string msg; |
---|
| 747 | if(debuglev_>0)cout << "Process Base" << endl; |
---|
| 748 | //------------------------ |
---|
| 749 | //Use the sca file informations |
---|
| 750 | //------------------------ |
---|
| 751 | // string scaFullPathName = "./"; |
---|
| 752 | //TOBE FIXED scaFullPathName += sourceName_+"/"+dateOfRun_ + StringToLower(sourceName_)+"/"; |
---|
| 753 | string scaFullPathName = inputPath_ + "/" |
---|
| 754 | + sourceName_+ "/" +dateOfRun_ + StringToLower(sourceName_)+ "/" + scaFileName_; |
---|
| 755 | char* scaTupleColumnName[9] = {"cycle","stcalOn","spcalOn","stOn","spOn","stcalOff","spcalOff","stOff","spOff"}; |
---|
| 756 | scaTuple_ = new NTuple(9,scaTupleColumnName); |
---|
| 757 | int n = scaTuple_->FillFromASCIIFile(scaFullPathName); |
---|
| 758 | if(n<0){ //Error |
---|
| 759 | msg = "(FATAL) NTuple error loading "+ scaFullPathName; |
---|
| 760 | rc = 999; |
---|
| 761 | throw msg; |
---|
| 762 | } |
---|
| 763 | |
---|
| 764 | if(debuglev_>1){ |
---|
| 765 | cout << "ProcessBase::processCmd: dump tuple in " << scaFullPathName << endl; |
---|
| 766 | scaTuple_->Show(cout); |
---|
| 767 | } |
---|
| 768 | |
---|
| 769 | |
---|
| 770 | //Get the cycles (here consider consecutive cycles) |
---|
| 771 | //The SCA file cannot be used as the DAQ can miss some cycles... |
---|
| 772 | // r_8 firstCycle, lastCycle; |
---|
| 773 | // scaTuple_->GetMinMax("cycle",firstCycle,lastCycle); |
---|
| 774 | // ifirstCycle_ = (sa_size_t)firstCycle; |
---|
| 775 | // ilastCycle_ = (sa_size_t)lastCycle; |
---|
| 776 | //Analyse the string given by -numcycle command line |
---|
| 777 | int ai1=0,ai2=0; |
---|
| 778 | sscanf(numcycle_.c_str(),"%d,%d",&ai1,&ai2); |
---|
| 779 | ifirstCycle_ = (sa_size_t)ai1; |
---|
| 780 | ilastCycle_ = (sa_size_t)ai2; |
---|
| 781 | |
---|
| 782 | |
---|
| 783 | //associate cycle number to index line in tuple |
---|
| 784 | sa_size_t nLines = scaTuple_->NbLines(); |
---|
| 785 | for(sa_size_t iL=0; iL<nLines; ++iL){ |
---|
| 786 | idCycleInTuple_[(sa_size_t)scaTuple_->GetCell(iL,"cycle")]=iL; |
---|
| 787 | } |
---|
| 788 | |
---|
| 789 | |
---|
| 790 | return rc; |
---|
| 791 | } |
---|
[593] | 792 | //---------------------------------------------- |
---|
| 793 | //JEC 27/10/11 |
---|
| 794 | //Process the files that are output of the specmfib -act = mspec (mean+sigma of signal files) |
---|
| 795 | //---------------------------------------------- |
---|
| 796 | int ProcessONOFFMeanData::processCmd() throw(string) { |
---|
| 797 | int rc = 0; |
---|
| 798 | try { |
---|
| 799 | rc = ProcessBase::processCmd(); |
---|
| 800 | } |
---|
| 801 | catch (string s) { |
---|
| 802 | throw s; |
---|
| 803 | } |
---|
| 804 | |
---|
| 805 | if(debuglev_>0)cout << "Process Data" << endl; |
---|
| 806 | vector<string> modeList; |
---|
| 807 | modeList.push_back("On"); |
---|
| 808 | modeList.push_back("Off"); |
---|
| 809 | vector<string>::const_iterator iMode; |
---|
| 810 | |
---|
| 811 | uint_4 id; |
---|
| 812 | string tag; |
---|
| 813 | |
---|
[598] | 814 | map< pair<string, sa_size_t>, TMatrix<r_4> > meanCollect; |
---|
| 815 | map< pair<string, sa_size_t>, TMatrix<r_4> > sigma2Collect; |
---|
[593] | 816 | map< pair<string, sa_size_t>, TMatrix<r_4> >::iterator iSpectre, iSpectreEnd; |
---|
| 817 | |
---|
| 818 | for (iMode = modeList.begin(); iMode != modeList.end(); ++iMode) { |
---|
| 819 | string mode = *iMode; |
---|
| 820 | if(debuglev_>0)cout << "Process Mean-mspec Mode " << mode << endl; |
---|
| 821 | |
---|
| 822 | //------------------------------------------ |
---|
| 823 | //Produce mean of the mean spectra per cycle |
---|
| 824 | //------------------------------------------ |
---|
| 825 | |
---|
| 826 | string directoryName; |
---|
| 827 | list<string> listOfSpecFiles; |
---|
| 828 | list<string>::const_iterator iFile, iFileEnd; |
---|
| 829 | |
---|
| 830 | |
---|
| 831 | // |
---|
| 832 | //loop on cycles |
---|
| 833 | // |
---|
| 834 | for (sa_size_t icycle = ifirstCycle_; icycle <= ilastCycle_; icycle++) { |
---|
| 835 | directoryName = inputPath_ + "/" |
---|
| 836 | + sourceName_ + "/" + dateOfRun_ + StringToLower(sourceName_) + "/" |
---|
| 837 | + mode + "/"; |
---|
| 838 | stringstream sicycle; |
---|
| 839 | sicycle << icycle; |
---|
| 840 | directoryName += spectraDirectory_ + sicycle.str() + "/"; |
---|
| 841 | |
---|
| 842 | //read directory |
---|
| 843 | listOfSpecFiles = ListOfFileInDir(directoryName,typeOfFile_); |
---|
| 844 | |
---|
| 845 | |
---|
| 846 | //compute mean of spectra created in a cycle |
---|
| 847 | if(debuglev_>0)cout << "compute mean for cycle " << icycle << endl; |
---|
| 848 | TMatrix<r_4> spectreMean(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //implicit init to 0 |
---|
[598] | 849 | TMatrix<r_4> spectreSigma2(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //implicit init to 0 |
---|
[593] | 850 | iFileEnd = listOfSpecFiles.end(); |
---|
| 851 | r_4 nSpectres = 0; |
---|
| 852 | for (iFile = listOfSpecFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
| 853 | FitsInOutFile aSpectrum(*iFile,FitsInOutFile::Fits_RO); |
---|
| 854 | TMatrix<r_4> spectre(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 855 | aSpectrum >> spectre; |
---|
[598] | 856 | spectreMean += spectre; |
---|
| 857 | spectreSigma2 += spectre && spectre; |
---|
[593] | 858 | nSpectres++; |
---|
| 859 | }// end of for files |
---|
[598] | 860 | if(nSpectres>0) { |
---|
| 861 | spectreMean /= nSpectres; |
---|
| 862 | spectreSigma2 /= nSpectres; |
---|
| 863 | spectreSigma2 -= spectreMean && spectreMean; |
---|
| 864 | } |
---|
[593] | 865 | |
---|
| 866 | //save mean spectrum |
---|
[598] | 867 | meanCollect.insert( pair< pair<string,sa_size_t>, TMatrix<r_4> >(make_pair(mode,icycle),TMatrix<r_4>(spectreMean,false) )); |
---|
| 868 | sigma2Collect.insert( pair< pair<string,sa_size_t>, TMatrix<r_4> >(make_pair(mode,icycle),TMatrix<r_4>(spectreSigma2,false) )); |
---|
[593] | 869 | }//end of for cycles |
---|
| 870 | }//end loop on mode for raw preocess |
---|
| 871 | |
---|
| 872 | if(debuglev_>1) {//save mean spectra on file |
---|
| 873 | cout << "Save mean spectra" << endl; |
---|
| 874 | string fileName; |
---|
| 875 | |
---|
[598] | 876 | fileName = "./dataMeanSigma2_" + dateOfRun_ + "_" + StringToLower(sourceName_) + ".ppf"; |
---|
[593] | 877 | |
---|
| 878 | POutPersist fos(fileName); |
---|
| 879 | id=0; |
---|
[598] | 880 | iSpectreEnd = meanCollect.end(); |
---|
| 881 | for (iSpectre = meanCollect.begin(); |
---|
[593] | 882 | iSpectre != iSpectreEnd ; ++iSpectre, ++id) { |
---|
| 883 | tag = "specMean"; |
---|
| 884 | |
---|
| 885 | tag += (iSpectre->first).first; |
---|
| 886 | stringstream sid; |
---|
| 887 | sid << (iSpectre->first).second; |
---|
| 888 | tag += sid.str(); |
---|
| 889 | if(debuglev_>9) { |
---|
| 890 | cout << "save tag<" << tag << ">" << endl; |
---|
| 891 | } |
---|
[598] | 892 | fos << PPFNameTag(tag) << iSpectre->second; |
---|
| 893 | } |
---|
[593] | 894 | |
---|
[598] | 895 | |
---|
| 896 | id=0; |
---|
| 897 | iSpectreEnd = sigma2Collect.end(); |
---|
| 898 | for (iSpectre = sigma2Collect.begin(); |
---|
| 899 | iSpectre != iSpectreEnd ; ++iSpectre, ++id) { |
---|
| 900 | tag = "specSigma2"; |
---|
| 901 | |
---|
| 902 | tag += (iSpectre->first).first; |
---|
| 903 | stringstream sid; |
---|
| 904 | sid << (iSpectre->first).second; |
---|
| 905 | tag += sid.str(); |
---|
| 906 | if(debuglev_>9) { |
---|
| 907 | cout << "save tag<" << tag << ">" << endl; |
---|
| 908 | } |
---|
[593] | 909 | fos << PPFNameTag(tag) << iSpectre->second; |
---|
| 910 | } |
---|
[598] | 911 | |
---|
[593] | 912 | }//end of save fits |
---|
| 913 | |
---|
| 914 | |
---|
| 915 | |
---|
| 916 | |
---|
| 917 | |
---|
| 918 | cout << "OK ProcessONOFFMeanData finished" <<endl; |
---|
| 919 | return rc; |
---|
| 920 | } |
---|
| 921 | //---------------------------------------------- |
---|
[598] | 922 | //---------------------------------------------- |
---|
| 923 | //JEC 8/11/11 |
---|
| 924 | //Process the files that are output of the specmfib -act = mspec (mean+sigma of signal files) |
---|
| 925 | //Compute the reduced variables r_i = (m_i - <m_i>)/(sig_i/sqrt(Npaq.)) |
---|
| 926 | //---------------------------------------------- |
---|
| 927 | int ProcessONOFFReducedMeanData::processCmd() throw(string) { |
---|
| 928 | int rc = 0; |
---|
| 929 | try { |
---|
| 930 | rc = ProcessBase::processCmd(); |
---|
| 931 | } |
---|
| 932 | catch (string s) { |
---|
| 933 | throw s; |
---|
| 934 | } |
---|
[593] | 935 | |
---|
[598] | 936 | if(debuglev_>0)cout << "Process Data" << endl; |
---|
| 937 | vector<string> modeList; |
---|
| 938 | modeList.push_back("On"); |
---|
| 939 | modeList.push_back("Off"); |
---|
| 940 | vector<string>::const_iterator iMode; |
---|
| 941 | |
---|
| 942 | uint_4 id; |
---|
| 943 | string tag; |
---|
| 944 | |
---|
| 945 | map<string, TMatrix<r_4> > meanSigmaRedRatioCollect; |
---|
| 946 | map<string, TMatrix<r_4> >::iterator iMeanSigmaRed, iMeanSigmaRedEnd; |
---|
| 947 | |
---|
| 948 | map< pair<string, sa_size_t>, TMatrix<r_4> > reducedRatioCollect; |
---|
| 949 | map< pair<string, sa_size_t>, TMatrix<r_4> >::iterator iReduced, iReducedEnd; |
---|
| 950 | |
---|
| 951 | map< sa_size_t, TMatrix<r_4> > meanCollect; |
---|
| 952 | map< sa_size_t, TMatrix<r_4> >::iterator iMean, iMeanEnd; |
---|
| 953 | |
---|
| 954 | map< sa_size_t, TMatrix<r_4> > sigmaCollect; |
---|
| 955 | map< sa_size_t, TMatrix<r_4> >::iterator iSigma, iSigmaEnd; |
---|
| 956 | |
---|
| 957 | // |
---|
| 958 | //loop on modes |
---|
| 959 | // |
---|
| 960 | for (iMode = modeList.begin(); iMode != modeList.end(); ++iMode) { |
---|
| 961 | string mode = *iMode; |
---|
| 962 | if(debuglev_>0)cout << "Process Mean-mspec Mode " << mode << endl; |
---|
| 963 | |
---|
| 964 | |
---|
| 965 | string directoryName; |
---|
| 966 | list<string> listOfMeanFiles; |
---|
| 967 | list<string> listOfSigma2Files; |
---|
| 968 | |
---|
| 969 | if (listOfMeanFiles.size() != listOfSigma2Files.size()) { |
---|
| 970 | throw "ProcessONOFFReducedMeanData: FATAL: length (1) missmatch"; |
---|
| 971 | } |
---|
| 972 | |
---|
| 973 | list<string>::const_iterator iFile, iFileEnd; |
---|
| 974 | //Mean of all Means (one per Mode) |
---|
| 975 | TMatrix<r_4> spectreMean(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //implicit init to 0 |
---|
| 976 | uint_4 nMeans = 0; |
---|
| 977 | uint_4 nSigma2s = 0; |
---|
| 978 | // |
---|
| 979 | //loop on cycles |
---|
| 980 | // |
---|
| 981 | for (sa_size_t icycle = ifirstCycle_; icycle <= ilastCycle_; icycle++) { |
---|
| 982 | directoryName = inputPath_ + "/" |
---|
| 983 | + sourceName_ + "/" + dateOfRun_ + StringToLower(sourceName_) + "/" |
---|
| 984 | + mode + "/"; |
---|
| 985 | stringstream sicycle; |
---|
| 986 | sicycle << icycle; |
---|
| 987 | directoryName += spectraDirectory_ + sicycle.str() + "/"; |
---|
| 988 | |
---|
| 989 | //read directory |
---|
| 990 | listOfMeanFiles = ListOfFileInDir(directoryName,typeOfFile_); //the means |
---|
| 991 | listOfSigma2Files = ListOfFileInDir(directoryName,sigma2FileName_); //the sigma2s |
---|
| 992 | |
---|
| 993 | //get a mean spectra per file |
---|
| 994 | iFileEnd = listOfMeanFiles.end(); |
---|
| 995 | for (iFile = listOfMeanFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
| 996 | // if(debuglev_>10){ |
---|
| 997 | // cout << "read file <" << *iFile << ">:"; |
---|
| 998 | // } |
---|
| 999 | FitsInOutFile aSpectrum(*iFile,FitsInOutFile::Fits_RO); |
---|
| 1000 | TMatrix<r_4> spectre(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 1001 | aSpectrum >> spectre; |
---|
| 1002 | // if(debuglev_>10){ |
---|
| 1003 | // cout << " mean of spectre = " << Mean(spectre) << endl; |
---|
| 1004 | // } |
---|
| 1005 | //update mean |
---|
| 1006 | spectreMean += spectre; |
---|
| 1007 | //save spectrum |
---|
| 1008 | meanCollect.insert( pair< sa_size_t, TMatrix<r_4> >(nMeans,TMatrix<r_4>(spectre,false) )); |
---|
| 1009 | |
---|
| 1010 | nMeans++; |
---|
| 1011 | }// end of for files |
---|
| 1012 | |
---|
| 1013 | //get a sigma2 spectra per file and store the sigma |
---|
| 1014 | iFileEnd = listOfSigma2Files.end(); |
---|
| 1015 | for (iFile = listOfSigma2Files.begin(); iFile != iFileEnd; ++iFile) { |
---|
| 1016 | // if(debuglev_>10){ |
---|
| 1017 | // cout << "read file <" << *iFile << ">:"; |
---|
| 1018 | // } |
---|
| 1019 | FitsInOutFile aSpectrum(*iFile,FitsInOutFile::Fits_RO); |
---|
| 1020 | TMatrix<r_4> spectre(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 1021 | aSpectrum >> spectre; |
---|
| 1022 | // if(debuglev_>10){ |
---|
| 1023 | // cout << " mean of spectre = " << Mean(Sqrt(spectre)) << endl; |
---|
| 1024 | // } |
---|
| 1025 | //save sigma = Sqrt(sigma2) |
---|
| 1026 | sigmaCollect.insert( pair< sa_size_t, TMatrix<r_4> >(nSigma2s,TMatrix<r_4>(Sqrt(spectre),false) )); |
---|
| 1027 | |
---|
| 1028 | nSigma2s++; |
---|
| 1029 | }// end of for files |
---|
| 1030 | |
---|
| 1031 | }//end of for cycles |
---|
| 1032 | |
---|
| 1033 | |
---|
| 1034 | //finalize mean of means |
---|
| 1035 | if(nMeans>0) { |
---|
| 1036 | spectreMean /= (r_4)nMeans; |
---|
| 1037 | // if(debuglev_>10){ |
---|
| 1038 | // cout << "Mean mode [" << mode << "]: " << Mean(spectreMean) <<endl; |
---|
| 1039 | // } |
---|
| 1040 | } else { |
---|
| 1041 | throw "ProcessONOFFReducedMeanData: FATAL: nMeans=0 !!!"; |
---|
| 1042 | } |
---|
| 1043 | |
---|
| 1044 | if ( nMeans != nSigma2s ) { |
---|
| 1045 | cout << "ProcessONOFFReducedMeanData: nMeans, nSigma2s " |
---|
| 1046 | << nMeans << " " <<nSigma2s |
---|
| 1047 | << endl; |
---|
| 1048 | throw "ProcessONOFFReducedMeanData: FATAL: nMeans <> nSigma2s !!!"; |
---|
| 1049 | } |
---|
| 1050 | |
---|
| 1051 | //from here nMeans == nSigma2s |
---|
| 1052 | iMeanEnd = meanCollect.end(); |
---|
| 1053 | iSigmaEnd = sigmaCollect.end(); |
---|
| 1054 | TMatrix<r_4> meanReducedRatio(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //implicit init to 0 |
---|
| 1055 | TMatrix<r_4> sigma2ReducedRatio(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //implicit init to 0 |
---|
| 1056 | for (id=0,iMean = meanCollect.begin(), iSigma=sigmaCollect.begin(); |
---|
| 1057 | id<nMeans; |
---|
| 1058 | ++id, ++iMean, ++iSigma) { |
---|
| 1059 | TMatrix<r_4> reducedRatio(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 1060 | // if(debuglev_>10){ |
---|
| 1061 | // cout << "reduced Mean [" << mode << "," << id << "]: " |
---|
| 1062 | // << Mean(iMean->second) << " " |
---|
| 1063 | // << Mean(spectreMean) << " " |
---|
| 1064 | // << Mean(iSigma->second) << " " |
---|
| 1065 | // << sqrt(valNPaqPerWin_) |
---|
| 1066 | // << endl; |
---|
| 1067 | // } |
---|
| 1068 | |
---|
| 1069 | reducedRatio = iMean->second - spectreMean; |
---|
| 1070 | reducedRatio.Div(iSigma->second); |
---|
| 1071 | reducedRatio *= sqrt(valNPaqPerWin_); |
---|
| 1072 | |
---|
| 1073 | meanReducedRatio += reducedRatio; |
---|
| 1074 | sigma2ReducedRatio += reducedRatio&&reducedRatio; |
---|
| 1075 | |
---|
| 1076 | // if(debuglev_>10){ |
---|
| 1077 | // cout << "reduced Mean [" << mode << "," << id << "]: " << Mean(reducedRatio) <<endl; |
---|
| 1078 | // } |
---|
| 1079 | |
---|
| 1080 | reducedRatioCollect.insert( pair< pair<string,sa_size_t>, TMatrix<r_4> >(make_pair(mode,id),TMatrix<r_4>(reducedRatio,false) )); |
---|
| 1081 | } |
---|
| 1082 | |
---|
| 1083 | if(debuglev_>10) cout << "number of Means used: " << nMeans << "( =" << nSigma2s << ")" << endl; |
---|
| 1084 | meanReducedRatio /= (r_4)nMeans; |
---|
| 1085 | sigma2ReducedRatio /= (r_4)nMeans; |
---|
| 1086 | sigma2ReducedRatio -= meanReducedRatio&&meanReducedRatio; |
---|
| 1087 | TMatrix<r_4> sigmaReducedRatio(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 1088 | sigmaReducedRatio = Sqrt(sigma2ReducedRatio); |
---|
| 1089 | |
---|
| 1090 | |
---|
| 1091 | meanSigmaRedRatioCollect.insert( pair< string, TMatrix<r_4> >(mode+"Mean",TMatrix<r_4>(meanReducedRatio,false)) ); |
---|
| 1092 | meanSigmaRedRatioCollect.insert( pair< string, TMatrix<r_4> >(mode+"Sigma",TMatrix<r_4>(sigmaReducedRatio,false)) ); |
---|
| 1093 | |
---|
| 1094 | |
---|
| 1095 | }//end loop on mode for raw preocess |
---|
| 1096 | |
---|
| 1097 | cout << "Save reduced variable based on Means/Sigmas" << endl; |
---|
| 1098 | string fileName; |
---|
| 1099 | |
---|
| 1100 | fileName = "./reducedMean_" + dateOfRun_ + "_" + StringToLower(sourceName_) + ".ppf"; |
---|
| 1101 | |
---|
| 1102 | POutPersist fos(fileName); |
---|
| 1103 | id=0; |
---|
| 1104 | iReducedEnd = reducedRatioCollect.end(); |
---|
| 1105 | for (iReduced = reducedRatioCollect.begin(); |
---|
| 1106 | iReduced != iReducedEnd ; ++iReduced, ++id) { |
---|
| 1107 | tag = "redMean"; |
---|
| 1108 | |
---|
| 1109 | tag += (iReduced->first).first; |
---|
| 1110 | stringstream sid; |
---|
| 1111 | sid << (iReduced->first).second; |
---|
| 1112 | tag += sid.str(); |
---|
| 1113 | if(debuglev_>9) { |
---|
| 1114 | cout << "save tag<" << tag << ">" << endl; |
---|
| 1115 | } |
---|
| 1116 | fos << PPFNameTag(tag) << iReduced->second; |
---|
| 1117 | } |
---|
| 1118 | |
---|
| 1119 | iMeanSigmaRedEnd = meanSigmaRedRatioCollect.end(); |
---|
| 1120 | for (iMeanSigmaRed = meanSigmaRedRatioCollect.begin(); |
---|
| 1121 | iMeanSigmaRed != iMeanSigmaRedEnd; |
---|
| 1122 | ++iMeanSigmaRed){ |
---|
| 1123 | tag = "redMean"; |
---|
| 1124 | tag += iMeanSigmaRed->first; |
---|
| 1125 | if(debuglev_>9) { |
---|
| 1126 | cout << "save tag<" << tag << ">" << endl; |
---|
| 1127 | } |
---|
| 1128 | fos << PPFNameTag(tag) << iMeanSigmaRed->second; |
---|
| 1129 | } |
---|
| 1130 | |
---|
| 1131 | cout << "OK ProcessONOFFReducedMeanData finished" <<endl; |
---|
| 1132 | return rc; |
---|
| 1133 | } |
---|
| 1134 | //---------------------------------------------- |
---|
| 1135 | |
---|
| 1136 | //---------------------------------------------- |
---|
| 1137 | //JEC 8/11/11 |
---|
| 1138 | //Process the files that are output of the specmfib -act = gain (median of signal files) |
---|
| 1139 | //Compute the reduced variables r_i = (med_i - <med_i>)/(med_i/(Ln(2)*sqrt(N)) |
---|
| 1140 | //---------------------------------------------- |
---|
| 1141 | int ProcessONOFFReducedMedianData::processCmd() throw(string) { |
---|
| 1142 | int rc = 0; |
---|
| 1143 | try { |
---|
| 1144 | rc = ProcessBase::processCmd(); |
---|
| 1145 | } |
---|
| 1146 | catch (string s) { |
---|
| 1147 | throw s; |
---|
| 1148 | } |
---|
| 1149 | |
---|
| 1150 | if(debuglev_>0)cout << "Process Data" << endl; |
---|
| 1151 | vector<string> modeList; |
---|
| 1152 | modeList.push_back("On"); |
---|
| 1153 | modeList.push_back("Off"); |
---|
| 1154 | vector<string>::const_iterator iMode; |
---|
| 1155 | |
---|
| 1156 | uint_4 id; |
---|
| 1157 | string tag; |
---|
| 1158 | |
---|
| 1159 | map<string, TMatrix<r_4> > meanSigmaRedRatioCollect; |
---|
| 1160 | map<string, TMatrix<r_4> >::iterator iMeanSigmaRed, iMeanSigmaRedEnd; |
---|
| 1161 | |
---|
| 1162 | map< pair<string, sa_size_t>, TMatrix<r_4> > reducedRatioCollect; |
---|
| 1163 | map< pair<string, sa_size_t>, TMatrix<r_4> >::iterator iReduced, iReducedEnd; |
---|
| 1164 | |
---|
| 1165 | map< sa_size_t, TMatrix<r_4> > medianCollect; |
---|
| 1166 | map< sa_size_t, TMatrix<r_4> >::iterator iMedian, iMedianEnd; |
---|
| 1167 | |
---|
| 1168 | map< sa_size_t, TMatrix<r_4> > sigmaCollect; |
---|
| 1169 | map< sa_size_t, TMatrix<r_4> >::iterator iSigma, iSigmaEnd; |
---|
| 1170 | |
---|
| 1171 | // |
---|
| 1172 | //loop on modes |
---|
| 1173 | // |
---|
| 1174 | for (iMode = modeList.begin(); iMode != modeList.end(); ++iMode) { |
---|
| 1175 | string mode = *iMode; |
---|
| 1176 | if(debuglev_>0)cout << "Process Mean-mspec Mode " << mode << endl; |
---|
| 1177 | |
---|
| 1178 | |
---|
| 1179 | string directoryName; |
---|
| 1180 | list<string> listOfMedianFiles; |
---|
| 1181 | |
---|
| 1182 | list<string>::const_iterator iFile, iFileEnd; |
---|
| 1183 | //Mean of all Medians (one per Mode) |
---|
| 1184 | TMatrix<r_4> spectreMean(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //implicit init to 0 |
---|
| 1185 | uint_4 nMedians = 0; |
---|
| 1186 | |
---|
| 1187 | // |
---|
| 1188 | //loop on cycles |
---|
| 1189 | // |
---|
| 1190 | for (sa_size_t icycle = ifirstCycle_; icycle <= ilastCycle_; icycle++) { |
---|
| 1191 | directoryName = inputPath_ + "/" |
---|
| 1192 | + sourceName_ + "/" + dateOfRun_ + StringToLower(sourceName_) + "/" |
---|
| 1193 | + mode + "/"; |
---|
| 1194 | stringstream sicycle; |
---|
| 1195 | sicycle << icycle; |
---|
| 1196 | directoryName += spectraDirectory_ + sicycle.str() + "/"; |
---|
| 1197 | |
---|
| 1198 | //read directory |
---|
| 1199 | listOfMedianFiles = ListOfFileInDir(directoryName,typeOfFile_); //the means |
---|
| 1200 | |
---|
| 1201 | //get a mean spectra per file |
---|
| 1202 | iFileEnd = listOfMedianFiles.end(); |
---|
| 1203 | for (iFile = listOfMedianFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
| 1204 | // if(debuglev_>10){ |
---|
| 1205 | // cout << "read file <" << *iFile << ">:"; |
---|
| 1206 | // } |
---|
| 1207 | FitsInOutFile aSpectrum(*iFile,FitsInOutFile::Fits_RO); |
---|
| 1208 | TMatrix<r_4> spectre(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 1209 | aSpectrum >> spectre; |
---|
| 1210 | // if(debuglev_>10){ |
---|
| 1211 | // cout << " mean of spectre = " << Mean(spectre) << endl; |
---|
| 1212 | // } |
---|
| 1213 | //update mean |
---|
| 1214 | spectreMean += spectre; |
---|
| 1215 | //save spectrum |
---|
| 1216 | medianCollect.insert( pair< sa_size_t, TMatrix<r_4> >(nMedians,TMatrix<r_4>(spectre,false) )); |
---|
| 1217 | sigmaCollect.insert( pair< sa_size_t, TMatrix<r_4> >(nMedians,TMatrix<r_4>(spectre,false) )); |
---|
| 1218 | |
---|
| 1219 | nMedians++; |
---|
| 1220 | }// end of for files |
---|
| 1221 | |
---|
| 1222 | }//end of for cycles |
---|
| 1223 | |
---|
| 1224 | |
---|
| 1225 | //finalize mean of means |
---|
| 1226 | if(nMedians>0) { |
---|
| 1227 | spectreMean /= (r_4)nMedians; |
---|
| 1228 | // if(debuglev_>10){ |
---|
| 1229 | // cout << "Mean mode [" << mode << "]: " << Mean(spectreMean) <<endl; |
---|
| 1230 | // } |
---|
| 1231 | } else { |
---|
| 1232 | throw "ProcessONOFFReducedMeanData: FATAL: nMedians=0 !!!"; |
---|
| 1233 | } |
---|
| 1234 | |
---|
| 1235 | iMedianEnd = medianCollect.end(); |
---|
| 1236 | iSigmaEnd = sigmaCollect.end(); |
---|
| 1237 | TMatrix<r_4> meanReducedRatio(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //implicit init to 0 |
---|
| 1238 | TMatrix<r_4> sigma2ReducedRatio(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //implicit init to 0 |
---|
| 1239 | for (id=0,iMedian = medianCollect.begin(), iSigma=sigmaCollect.begin(); |
---|
| 1240 | id<nMedians; |
---|
| 1241 | ++id, ++iMedian, ++iSigma) { |
---|
| 1242 | TMatrix<r_4> reducedRatio(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 1243 | // if(debuglev_>10){ |
---|
| 1244 | // cout << "reduced Mean [" << mode << "," << id << "]: " |
---|
| 1245 | // << Mean(iMedian->second) << " " |
---|
| 1246 | // << Mean(spectreMean) << " " |
---|
| 1247 | // << Mean(iSigma->second) << " " |
---|
| 1248 | // << sqrt(valNPaqPerWin_) |
---|
| 1249 | // << endl; |
---|
| 1250 | // } |
---|
| 1251 | |
---|
| 1252 | reducedRatio = iMedian->second - spectreMean; |
---|
| 1253 | reducedRatio.Div(iSigma->second); |
---|
| 1254 | reducedRatio *= sqrt(valNPaqPerWin_)*log(2.0); |
---|
| 1255 | |
---|
| 1256 | meanReducedRatio += reducedRatio; |
---|
| 1257 | sigma2ReducedRatio += reducedRatio&&reducedRatio; |
---|
| 1258 | |
---|
| 1259 | // if(debuglev_>10){ |
---|
| 1260 | // cout << "reduced Mean [" << mode << "," << id << "]: " << Mean(reducedRatio) <<endl; |
---|
| 1261 | // } |
---|
| 1262 | |
---|
| 1263 | reducedRatioCollect.insert( pair< pair<string,sa_size_t>, TMatrix<r_4> >(make_pair(mode,id),TMatrix<r_4>(reducedRatio,false) )); |
---|
| 1264 | } |
---|
| 1265 | |
---|
| 1266 | if(debuglev_>10) cout << "number of Means used: " << nMedians << endl; |
---|
| 1267 | meanReducedRatio /= (r_4)nMedians; |
---|
| 1268 | sigma2ReducedRatio /= (r_4)nMedians; |
---|
| 1269 | sigma2ReducedRatio -= meanReducedRatio&&meanReducedRatio; |
---|
| 1270 | TMatrix<r_4> sigmaReducedRatio(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 1271 | sigmaReducedRatio = Sqrt(sigma2ReducedRatio); |
---|
| 1272 | |
---|
| 1273 | |
---|
| 1274 | meanSigmaRedRatioCollect.insert( pair< string, TMatrix<r_4> >(mode+"Mean",TMatrix<r_4>(meanReducedRatio,false)) ); |
---|
| 1275 | meanSigmaRedRatioCollect.insert( pair< string, TMatrix<r_4> >(mode+"Sigma",TMatrix<r_4>(sigmaReducedRatio,false)) ); |
---|
| 1276 | |
---|
| 1277 | |
---|
| 1278 | }//end loop on mode for raw preocess |
---|
| 1279 | |
---|
| 1280 | cout << "Save reduced variable based on Means/Sigmas" << endl; |
---|
| 1281 | string fileName; |
---|
| 1282 | |
---|
| 1283 | fileName = "./reducedMedian_" + dateOfRun_ + "_" + StringToLower(sourceName_) + ".ppf"; |
---|
| 1284 | |
---|
| 1285 | POutPersist fos(fileName); |
---|
| 1286 | id=0; |
---|
| 1287 | iReducedEnd = reducedRatioCollect.end(); |
---|
| 1288 | for (iReduced = reducedRatioCollect.begin(); |
---|
| 1289 | iReduced != iReducedEnd ; ++iReduced, ++id) { |
---|
| 1290 | tag = "redMedian"; |
---|
| 1291 | |
---|
| 1292 | tag += (iReduced->first).first; |
---|
| 1293 | stringstream sid; |
---|
| 1294 | sid << (iReduced->first).second; |
---|
| 1295 | tag += sid.str(); |
---|
| 1296 | if(debuglev_>9) { |
---|
| 1297 | cout << "save tag<" << tag << ">" << endl; |
---|
| 1298 | } |
---|
| 1299 | fos << PPFNameTag(tag) << iReduced->second; |
---|
| 1300 | } |
---|
| 1301 | |
---|
| 1302 | iMeanSigmaRedEnd = meanSigmaRedRatioCollect.end(); |
---|
| 1303 | for (iMeanSigmaRed = meanSigmaRedRatioCollect.begin(); |
---|
| 1304 | iMeanSigmaRed != iMeanSigmaRedEnd; |
---|
| 1305 | ++iMeanSigmaRed){ |
---|
| 1306 | tag = "redMedian"; |
---|
| 1307 | tag += iMeanSigmaRed->first; |
---|
| 1308 | if(debuglev_>9) { |
---|
| 1309 | cout << "save tag<" << tag << ">" << endl; |
---|
| 1310 | } |
---|
| 1311 | fos << PPFNameTag(tag) << iMeanSigmaRed->second; |
---|
| 1312 | } |
---|
| 1313 | |
---|
| 1314 | cout << "OK ProcessONOFFReducedMedianData finished" <<endl; |
---|
| 1315 | return rc; |
---|
| 1316 | } |
---|
| 1317 | //---------------------------------------------- |
---|
| 1318 | |
---|
[524] | 1319 | //JEC 22/9/11 Make ON-OFF analysis WO any calibration START |
---|
[507] | 1320 | //---------------------------------------------- |
---|
[524] | 1321 | int ProcessONOFFRawData::processCmd() throw(string) { |
---|
| 1322 | int rc = 0; |
---|
| 1323 | try { |
---|
| 1324 | rc = ProcessBase::processCmd(); |
---|
| 1325 | } |
---|
| 1326 | catch (string s) { |
---|
| 1327 | throw s; |
---|
| 1328 | } |
---|
| 1329 | if(debuglev_>0)cout << "Process Raw Data ON OFF" << endl; |
---|
| 1330 | vector<string> modeList; |
---|
| 1331 | modeList.push_back("On"); |
---|
| 1332 | modeList.push_back("Off"); |
---|
| 1333 | vector<string>::const_iterator iMode; |
---|
| 1334 | |
---|
| 1335 | uint_4 id; |
---|
| 1336 | string tag; |
---|
| 1337 | |
---|
| 1338 | // |
---|
| 1339 | //Process to get sucessively |
---|
| 1340 | //Raw Spectra, |
---|
[595] | 1341 | //The processes are separated to allow intermediate save of results |
---|
[524] | 1342 | |
---|
| 1343 | map< pair<string, sa_size_t>, TMatrix<r_4> > spectreCollect; |
---|
| 1344 | map< pair<string, sa_size_t>, TMatrix<r_4> >::iterator iSpectre, iSpectreEnd; |
---|
| 1345 | |
---|
| 1346 | for (iMode = modeList.begin(); iMode != modeList.end(); ++iMode) { |
---|
| 1347 | string mode = *iMode; |
---|
| 1348 | if(debuglev_>0)cout << "Process RAW Mode " << mode << endl; |
---|
| 1349 | |
---|
| 1350 | //------------------------------------------ |
---|
| 1351 | //Produce Raw spectra per cycle |
---|
| 1352 | //------------------------------------------ |
---|
| 1353 | |
---|
| 1354 | string directoryName; |
---|
| 1355 | list<string> listOfSpecFiles; |
---|
| 1356 | list<string>::const_iterator iFile, iFileEnd; |
---|
| 1357 | |
---|
| 1358 | |
---|
| 1359 | // |
---|
| 1360 | //loop on cycles |
---|
| 1361 | // |
---|
| 1362 | for (sa_size_t icycle = ifirstCycle_; icycle <= ilastCycle_; icycle++) { |
---|
[593] | 1363 | directoryName = inputPath_ + "/" |
---|
| 1364 | + sourceName_ + "/" + dateOfRun_ + StringToLower(sourceName_) + "/" |
---|
| 1365 | + mode + "/"; |
---|
[524] | 1366 | stringstream sicycle; |
---|
| 1367 | sicycle << icycle; |
---|
| 1368 | directoryName += spectraDirectory_ + sicycle.str() + "/"; |
---|
| 1369 | |
---|
| 1370 | //read directory |
---|
| 1371 | listOfSpecFiles = ListOfFileInDir(directoryName,typeOfFile_); |
---|
| 1372 | |
---|
| 1373 | |
---|
| 1374 | //compute mean of spectra created in a cycle |
---|
| 1375 | if(debuglev_>0)cout << "compute mean for cycle " << icycle << endl; |
---|
| 1376 | TMatrix<r_4> spectreMean(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //implicit init to 0 |
---|
| 1377 | iFileEnd = listOfSpecFiles.end(); |
---|
| 1378 | r_4 nSpectres = 0; |
---|
| 1379 | for (iFile = listOfSpecFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
| 1380 | FitsInOutFile aSpectrum(*iFile,FitsInOutFile::Fits_RO); |
---|
| 1381 | TMatrix<r_4> spectre(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 1382 | aSpectrum >> spectre; |
---|
| 1383 | spectreMean += spectre; |
---|
| 1384 | nSpectres++; |
---|
| 1385 | }// end of for files |
---|
| 1386 | if(nSpectres>0) spectreMean /= nSpectres; |
---|
| 1387 | |
---|
| 1388 | //save mean spectrum |
---|
| 1389 | spectreCollect.insert( pair< pair<string,sa_size_t>, TMatrix<r_4> >(make_pair(mode,icycle),TMatrix<r_4>(spectreMean,false) )); |
---|
| 1390 | }//end of for cycles |
---|
| 1391 | }//end loop on mode for raw preocess |
---|
| 1392 | |
---|
[527] | 1393 | //JEC 23/9/11 DO IT |
---|
| 1394 | // if(debuglev_>1) {//save mean spectra on file |
---|
| 1395 | cout << "Save mean raw spectra" << endl; |
---|
| 1396 | string fileName; |
---|
| 1397 | fileName = "./dataRaw_" + dateOfRun_ + "_" + StringToLower(sourceName_) + ".ppf"; |
---|
[524] | 1398 | |
---|
[527] | 1399 | POutPersist fos(fileName); |
---|
| 1400 | id=0; |
---|
| 1401 | iSpectreEnd = spectreCollect.end(); |
---|
| 1402 | for (iSpectre = spectreCollect.begin(); |
---|
| 1403 | iSpectre != iSpectreEnd ; ++iSpectre, ++id) { |
---|
| 1404 | tag = "specRaw"; |
---|
| 1405 | tag += (iSpectre->first).first; |
---|
| 1406 | stringstream sid; |
---|
| 1407 | sid << (iSpectre->first).second; |
---|
| 1408 | tag += sid.str(); |
---|
| 1409 | if(debuglev_>9) { |
---|
| 1410 | cout << "save tag<" << tag << ">" << endl; |
---|
[524] | 1411 | } |
---|
[527] | 1412 | fos << PPFNameTag(tag) << iSpectre->second; |
---|
| 1413 | } |
---|
| 1414 | // }//end of save fits |
---|
[524] | 1415 | |
---|
| 1416 | |
---|
| 1417 | //------------------------------------------ |
---|
| 1418 | // Perform ON-OFF |
---|
| 1419 | //------------------------------------------ |
---|
| 1420 | |
---|
| 1421 | map< sa_size_t, TMatrix<r_4> > diffCollect; |
---|
| 1422 | map< sa_size_t, TMatrix<r_4> >::iterator iDiff, iDiffEnd; |
---|
| 1423 | |
---|
| 1424 | TMatrix<r_4> diffMeanOnOff(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //init zero |
---|
| 1425 | r_4 nCycles = 0; |
---|
| 1426 | for (sa_size_t icycle = ifirstCycle_; icycle <= ilastCycle_; icycle++) { |
---|
| 1427 | nCycles++; |
---|
| 1428 | TMatrix<r_4> specmtxOn(spectreCollect[make_pair(modeList[0],icycle)],false); //clone the memory |
---|
| 1429 | TMatrix<r_4> specmtxOff(spectreCollect[make_pair(modeList[1],icycle)],false); //clone the memory |
---|
| 1430 | TMatrix<r_4> diffOnOff = specmtxOn - specmtxOff; |
---|
| 1431 | diffCollect.insert(pair< sa_size_t,TMatrix<r_4> >(icycle,TMatrix<r_4>(diffOnOff,false) )); |
---|
| 1432 | diffMeanOnOff += diffOnOff; |
---|
| 1433 | }//end loop on cycle |
---|
| 1434 | if(nCycles>0) diffMeanOnOff/=nCycles; |
---|
| 1435 | |
---|
[595] | 1436 | //extract channels and do the mean |
---|
[524] | 1437 | TVector<r_4> meanOfChan(NUMBER_OF_FREQ); //implicitly init to 0 |
---|
| 1438 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh) { |
---|
| 1439 | meanOfChan += diffMeanOnOff.Row(iCh).Transpose(); |
---|
| 1440 | } |
---|
| 1441 | meanOfChan /= (r_4)NUMBER_OF_CHANNELS; |
---|
| 1442 | |
---|
| 1443 | |
---|
| 1444 | |
---|
| 1445 | {//save diff ON-OFF on Raw data |
---|
| 1446 | if(debuglev_>0)cout << "save ON-OFF RAW spectra" << endl; |
---|
| 1447 | string fileName; |
---|
| 1448 | fileName = "./diffOnOffRaw_" + dateOfRun_ + "_" + StringToLower(sourceName_) + ".ppf"; |
---|
| 1449 | POutPersist fos(fileName); |
---|
| 1450 | iDiffEnd = diffCollect.end(); |
---|
| 1451 | id = 0; |
---|
| 1452 | |
---|
| 1453 | //JEC 22/9/11 Mean & Sigma in 32-bins size START |
---|
| 1454 | sa_size_t nSliceFreq = 32; //TODO: put as an input parameter option ? |
---|
| 1455 | sa_size_t deltaFreq = NUMBER_OF_FREQ/nSliceFreq; |
---|
| 1456 | //JEC 22/9/11 Mean & Sigma in 32-bins size END |
---|
| 1457 | |
---|
| 1458 | for (iDiff = diffCollect.begin();iDiff != iDiffEnd ; ++iDiff, id++) { |
---|
| 1459 | tag = "specONOFFRaw"; |
---|
| 1460 | stringstream sid; |
---|
| 1461 | sid << iDiff->first; |
---|
| 1462 | tag += sid.str(); |
---|
| 1463 | fos << PPFNameTag(tag) << iDiff->second; |
---|
| 1464 | |
---|
| 1465 | //JEC 22/9/11 Mean & Sigma in 32-bins size START |
---|
| 1466 | if (debuglev_>9) { |
---|
| 1467 | cout << "Debug slicing: slice/delta " << nSliceFreq << " " << deltaFreq << endl; |
---|
| 1468 | } |
---|
| 1469 | TMatrix<r_4> reducedMeanDiffOnOff(NUMBER_OF_CHANNELS,nSliceFreq); //init 0 by default |
---|
| 1470 | TMatrix<r_4> reducedSigmaDiffOnOff(NUMBER_OF_CHANNELS,nSliceFreq); //init 0 by default |
---|
| 1471 | for (sa_size_t iSlice=0; iSlice<nSliceFreq; iSlice++){ |
---|
| 1472 | sa_size_t freqLow= iSlice*deltaFreq; |
---|
| 1473 | sa_size_t freqHigh= freqLow + deltaFreq -1; |
---|
| 1474 | if (debuglev_>9) { |
---|
| 1475 | cout << "Debug .......... slicing ["<< iSlice << "]: low/high freq" << freqLow << "/" << freqHigh << endl; |
---|
| 1476 | } |
---|
| 1477 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
| 1478 | if (debuglev_>9) { |
---|
| 1479 | cout << "Debug .......... Channel " << iCh; |
---|
| 1480 | } |
---|
| 1481 | TVector<r_4> reducedRow; |
---|
| 1482 | reducedRow = (iDiff->second).SubMatrix(Range(iCh),Range(freqLow,freqHigh)).CompactAllDimensions(); |
---|
| 1483 | double mean; |
---|
| 1484 | double sigma; |
---|
| 1485 | MeanSigma(reducedRow,mean,sigma); |
---|
| 1486 | if (debuglev_>9) { |
---|
[595] | 1487 | cout << "mean/sigma " << mean << "/" << sigma << endl; |
---|
[524] | 1488 | } |
---|
| 1489 | reducedMeanDiffOnOff(iCh,iSlice) = mean; |
---|
| 1490 | reducedSigmaDiffOnOff(iCh,iSlice) = sigma; |
---|
| 1491 | }//loop on Channel |
---|
| 1492 | }//loop on Freq. slice |
---|
| 1493 | tag = "redMeanONOFFRaw"; |
---|
| 1494 | tag += sid.str(); |
---|
| 1495 | fos << PPFNameTag(tag) << reducedMeanDiffOnOff; |
---|
| 1496 | tag = "redSigmaONOFFRaw"; |
---|
| 1497 | tag += sid.str(); |
---|
| 1498 | fos << PPFNameTag(tag) << reducedSigmaDiffOnOff; |
---|
| 1499 | //JEC 22/9/11 END |
---|
| 1500 | |
---|
| 1501 | }//loop on ON-OFF spectre |
---|
| 1502 | //save the mean also |
---|
| 1503 | fos << PPFNameTag("specONOFFRawMean") << diffMeanOnOff; |
---|
| 1504 | |
---|
| 1505 | //JEC 22/9/11 START |
---|
| 1506 | TMatrix<r_4> reducedMeanDiffOnOffAll(NUMBER_OF_CHANNELS,nSliceFreq); //init 0 by default |
---|
| 1507 | TMatrix<r_4> reducedSigmaDiffOnOffAll(NUMBER_OF_CHANNELS,nSliceFreq); //init 0 by default |
---|
| 1508 | for (sa_size_t iSlice=0; iSlice<nSliceFreq; iSlice++){ |
---|
| 1509 | sa_size_t freqLow= iSlice*deltaFreq; |
---|
| 1510 | sa_size_t freqHigh= freqLow + deltaFreq -1; |
---|
| 1511 | if (debuglev_>9) { |
---|
| 1512 | cout << "Debug .......... slicing ["<< iSlice << "]: low/high freq" << freqLow << "/" << freqHigh << endl; |
---|
| 1513 | } |
---|
| 1514 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh){ |
---|
| 1515 | if (debuglev_>9) { |
---|
| 1516 | cout << "Debug .......... Channel " << iCh; |
---|
| 1517 | } |
---|
| 1518 | TVector<r_4> reducedRow; |
---|
| 1519 | reducedRow = diffMeanOnOff.SubMatrix(Range(iCh),Range(freqLow,freqHigh)).CompactAllDimensions(); |
---|
| 1520 | double mean; |
---|
| 1521 | double sigma; |
---|
| 1522 | MeanSigma(reducedRow,mean,sigma); |
---|
| 1523 | if (debuglev_>9) { |
---|
| 1524 | cout << "mean/signa " << mean << "/" << sigma << endl; |
---|
| 1525 | } |
---|
| 1526 | reducedMeanDiffOnOffAll(iCh,iSlice) = mean; |
---|
| 1527 | reducedSigmaDiffOnOffAll(iCh,iSlice) = sigma; |
---|
| 1528 | }//loop on Channel |
---|
| 1529 | }//loop on Freq. slice |
---|
| 1530 | tag = "redMeanONOFFRawAll"; |
---|
| 1531 | fos << PPFNameTag(tag) << reducedMeanDiffOnOffAll; |
---|
| 1532 | tag = "redSigmaONOFFRawAll"; |
---|
| 1533 | fos << PPFNameTag(tag) << reducedSigmaDiffOnOffAll; |
---|
| 1534 | //JEC 22/9/11 END |
---|
| 1535 | |
---|
| 1536 | |
---|
| 1537 | |
---|
| 1538 | fos << PPFNameTag("specONOFFRaw2ChanMean") << meanOfChan; |
---|
| 1539 | }//end of save fits |
---|
| 1540 | |
---|
[527] | 1541 | |
---|
| 1542 | cout << "OK rawOnOff finished" <<endl; |
---|
[524] | 1543 | return rc; |
---|
| 1544 | } //ProcessONOFFRawData::processCmd |
---|
| 1545 | |
---|
| 1546 | //JEC 22/9/11 Make ON-OFF analysis WO any calibration END |
---|
| 1547 | //---------------------------------------------- |
---|
[507] | 1548 | int ProcessONOFFData::processCmd() throw(string) { |
---|
| 1549 | int rc = 0; |
---|
| 1550 | try { |
---|
| 1551 | rc = ProcessBase::processCmd(); |
---|
| 1552 | } |
---|
| 1553 | catch (string s) { |
---|
| 1554 | throw s; |
---|
| 1555 | } |
---|
[593] | 1556 | if(debuglev_>0)cout << "Process Data" << endl; |
---|
[507] | 1557 | vector<string> modeList; |
---|
| 1558 | modeList.push_back("On"); |
---|
| 1559 | modeList.push_back("Off"); |
---|
| 1560 | vector<string>::const_iterator iMode; |
---|
| 1561 | |
---|
| 1562 | uint_4 id; |
---|
| 1563 | string tag; |
---|
| 1564 | |
---|
| 1565 | // |
---|
| 1566 | //Process to get sucessively |
---|
| 1567 | //Raw Spectra, |
---|
| 1568 | //BAO Calibrated Spectra |
---|
| 1569 | //and RT Calibrated Spectra |
---|
| 1570 | //The pocesses are separated to allow intermediate save of results |
---|
| 1571 | |
---|
| 1572 | map< pair<string, sa_size_t>, TMatrix<r_4> > spectreCollect; |
---|
| 1573 | map< pair<string, sa_size_t>, TMatrix<r_4> >::iterator iSpectre, iSpectreEnd; |
---|
| 1574 | |
---|
| 1575 | for (iMode = modeList.begin(); iMode != modeList.end(); ++iMode) { |
---|
| 1576 | string mode = *iMode; |
---|
| 1577 | if(debuglev_>0)cout << "Process RAW Mode " << mode << endl; |
---|
| 1578 | |
---|
| 1579 | //------------------------------------------ |
---|
| 1580 | //Produce Raw spectra per cycle |
---|
| 1581 | //------------------------------------------ |
---|
| 1582 | |
---|
| 1583 | string directoryName; |
---|
| 1584 | list<string> listOfSpecFiles; |
---|
| 1585 | list<string>::const_iterator iFile, iFileEnd; |
---|
| 1586 | |
---|
| 1587 | |
---|
| 1588 | // |
---|
| 1589 | //loop on cycles |
---|
| 1590 | // |
---|
| 1591 | for (sa_size_t icycle = ifirstCycle_; icycle <= ilastCycle_; icycle++) { |
---|
| 1592 | //TOBE FIXED directoryName = "./" + sourceName_ + "/"+ dateOfRun_ + StringToLower(sourceName_) + "/" +mode + "/"; |
---|
| 1593 | directoryName = "./" + mode + "/"; |
---|
| 1594 | stringstream sicycle; |
---|
| 1595 | sicycle << icycle; |
---|
| 1596 | directoryName += spectraDirectory_ + sicycle.str() + "/"; |
---|
| 1597 | |
---|
| 1598 | //read directory |
---|
| 1599 | listOfSpecFiles = ListOfFileInDir(directoryName,typeOfFile_); |
---|
| 1600 | |
---|
| 1601 | |
---|
| 1602 | //compute mean of spectra created in a cycle |
---|
| 1603 | if(debuglev_>0)cout << "compute mean for cycle " << icycle << endl; |
---|
| 1604 | TMatrix<r_4> spectreMean(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //implicit init to 0 |
---|
| 1605 | iFileEnd = listOfSpecFiles.end(); |
---|
| 1606 | r_4 nSpectres = 0; |
---|
| 1607 | for (iFile = listOfSpecFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
| 1608 | FitsInOutFile aSpectrum(*iFile,FitsInOutFile::Fits_RO); |
---|
| 1609 | TMatrix<r_4> spectre(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 1610 | aSpectrum >> spectre; |
---|
| 1611 | spectreMean += spectre; |
---|
| 1612 | nSpectres++; |
---|
| 1613 | }// end of for files |
---|
| 1614 | if(nSpectres>0) spectreMean /= nSpectres; |
---|
| 1615 | |
---|
| 1616 | //save mean spectrum |
---|
| 1617 | spectreCollect.insert( pair< pair<string,sa_size_t>, TMatrix<r_4> >(make_pair(mode,icycle),TMatrix<r_4>(spectreMean,false) )); |
---|
| 1618 | }//end of for cycles |
---|
| 1619 | }//end loop on mode for raw preocess |
---|
| 1620 | |
---|
| 1621 | if(debuglev_>1) {//save mean spectra on file |
---|
| 1622 | cout << "Save mean raw spectra" << endl; |
---|
| 1623 | string fileName; |
---|
| 1624 | //TOBE FIXED fileName = "./" + sourceName_ + "/" + dateOfRun_ + "_" + StringToLower(sourceName_) + "_" + "dataRaw" + ".ppf"; |
---|
| 1625 | fileName = "./dataRaw_" + dateOfRun_ + "_" + StringToLower(sourceName_) + ".ppf"; |
---|
| 1626 | |
---|
| 1627 | POutPersist fos(fileName); |
---|
| 1628 | id=0; |
---|
| 1629 | iSpectreEnd = spectreCollect.end(); |
---|
| 1630 | for (iSpectre = spectreCollect.begin(); |
---|
| 1631 | iSpectre != iSpectreEnd ; ++iSpectre, ++id) { |
---|
| 1632 | tag = "specRaw"; |
---|
[523] | 1633 | |
---|
| 1634 | //JEC 20/9/11 modif tag to take into account Mode and Cycle number START |
---|
| 1635 | // stringstream sid; |
---|
| 1636 | // sid << id; |
---|
| 1637 | // tag += sid.str(); |
---|
| 1638 | tag += (iSpectre->first).first; |
---|
[507] | 1639 | stringstream sid; |
---|
[523] | 1640 | sid << (iSpectre->first).second; |
---|
[507] | 1641 | tag += sid.str(); |
---|
[523] | 1642 | if(debuglev_>9) { |
---|
| 1643 | cout << "save tag<" << tag << ">" << endl; |
---|
| 1644 | } |
---|
| 1645 | //JEC 20/9/11 modif tag to take into account Mode and Cycle number END |
---|
| 1646 | |
---|
[507] | 1647 | fos << PPFNameTag(tag) << iSpectre->second; |
---|
| 1648 | } |
---|
| 1649 | }//end of save fits |
---|
| 1650 | |
---|
| 1651 | |
---|
| 1652 | |
---|
| 1653 | for (iMode = modeList.begin(); iMode != modeList.end(); ++iMode) { |
---|
| 1654 | string mode = *iMode; |
---|
| 1655 | if(debuglev_>0)cout << "Process CALIB BAO Mode " << mode << endl; |
---|
| 1656 | //------------------------------------------ |
---|
| 1657 | // Correct Raw spectra for BAO calibration |
---|
| 1658 | //------------------------------------------ |
---|
| 1659 | //Read BAO calibration files |
---|
| 1660 | sa_size_t nr,nc; //values read |
---|
[523] | 1661 | |
---|
[556] | 1662 | //JEC 20/9/11 use mean calibration coeff upon all cycles START |
---|
[523] | 1663 | string calibFileName = inputPath_+ "/" |
---|
| 1664 | + sourceName_ + "/" + dateOfRun_ + StringToLower(sourceName_) |
---|
| 1665 | + "/calib_" + dateOfRun_ + "_" + StringToLower(sourceName_) + "_" |
---|
| 1666 | + mode + "_" + freqBAOCalibration_ + "MHz-All.txt"; |
---|
[507] | 1667 | |
---|
[523] | 1668 | if(debuglev_>0) cout << "Read file " << calibFileName << endl; |
---|
| 1669 | ifstream ifs(calibFileName.c_str()); |
---|
| 1670 | if ( ! ifs.is_open() ) { |
---|
| 1671 | rc = 999; |
---|
| 1672 | throw calibFileName + " cannot be opened..."; |
---|
| 1673 | } |
---|
| 1674 | TVector<r_4> calibBAOfactors; |
---|
| 1675 | if(debuglev_>9) cout << "Debug 1" << endl; |
---|
| 1676 | calibBAOfactors.ReadASCII(ifs,nr,nc); |
---|
| 1677 | if(debuglev_>9){ |
---|
| 1678 | cout << "Debug 2: (nr,nc): "<< nr << "," << nc << endl; |
---|
| 1679 | calibBAOfactors.Print(cout); |
---|
| 1680 | } |
---|
[507] | 1681 | |
---|
[556] | 1682 | //JEC 20/9/11 use mean calibration coeff upon all cycles END |
---|
[523] | 1683 | |
---|
[507] | 1684 | // |
---|
| 1685 | //spectra corrected by BAO calibration factor |
---|
[523] | 1686 | //-----make it different on Channels and Cycles (1/06/2011) OBSOLETE |
---|
| 1687 | //use mean calibration coeff upon all cycles (20/6/11) |
---|
[507] | 1688 | //warning cycles are numbered from 1,...,N |
---|
| 1689 | // |
---|
| 1690 | if(debuglev_>0)cout << "do calibration..." << endl; |
---|
| 1691 | for (sa_size_t icycle = ifirstCycle_; icycle <= ilastCycle_; icycle++) { |
---|
| 1692 | TMatrix<r_4> specmtx(spectreCollect[make_pair(mode,icycle)],true); //share the memory |
---|
| 1693 | |
---|
| 1694 | for (sa_size_t iCh=0;iCh<NUMBER_OF_CHANNELS;++iCh){ |
---|
[523] | 1695 | //JEC 20/9/11 use mean calibration coeff upon all cycles START |
---|
| 1696 | |
---|
| 1697 | // specmtx( Range(iCh), Range::all() ) /= calibBAOfactors(iCh,icycle-1); |
---|
| 1698 | specmtx( Range(iCh), Range::all() ) /= calibBAOfactors(iCh); |
---|
| 1699 | //JEC 20/9/11 use mean calibration coeff upon all cycles END |
---|
[507] | 1700 | } |
---|
| 1701 | } |
---|
| 1702 | } //end loop mode for BAO calib |
---|
| 1703 | |
---|
[556] | 1704 | cout << "save calibrated BAO spectra" << endl; |
---|
| 1705 | string fileName; |
---|
| 1706 | //TO BE FIXED fileName = "./" + sourceName_ + "/" + dateOfRun_ + "_" + StringToLower(sourceName_) + "_" + "dataBAOCalib" + ".ppf"; |
---|
| 1707 | fileName = "./dataBAOCalib_" + dateOfRun_ + "_" + StringToLower(sourceName_) + ".ppf"; |
---|
| 1708 | |
---|
| 1709 | POutPersist fos(fileName); |
---|
| 1710 | iSpectreEnd = spectreCollect.end(); |
---|
| 1711 | id=0; |
---|
| 1712 | for (iSpectre = spectreCollect.begin();iSpectre != iSpectreEnd ; ++iSpectre, ++id) { |
---|
| 1713 | |
---|
| 1714 | tag = "specBAOCalib"; |
---|
| 1715 | //JEC 20/9/11 modif tag to take into account Mode and Cycle number START |
---|
| 1716 | // stringstream sid; |
---|
| 1717 | // sid << id; |
---|
| 1718 | // tag += sid.str(); |
---|
| 1719 | tag += (iSpectre->first).first; |
---|
| 1720 | stringstream sid; |
---|
| 1721 | sid << (iSpectre->first).second; |
---|
| 1722 | tag += sid.str(); |
---|
| 1723 | if(debuglev_>9) { |
---|
| 1724 | cout << "save tag<" << tag << ">" << endl; |
---|
[507] | 1725 | } |
---|
[556] | 1726 | //JEC 20/9/11 modif tag to take into account Mode and Cycle number END |
---|
| 1727 | |
---|
| 1728 | fos << PPFNameTag(tag) << iSpectre->second; |
---|
| 1729 | } |
---|
[507] | 1730 | |
---|
| 1731 | for (iMode = modeList.begin(); iMode != modeList.end(); ++iMode) { |
---|
| 1732 | string mode = *iMode; |
---|
| 1733 | if(debuglev_>0)cout << "Process CALIB RT Mode " << mode << endl; |
---|
| 1734 | //------------------------------------------ |
---|
| 1735 | // Correct BAO calib spectra for RT calibration |
---|
| 1736 | //------------------------------------------ |
---|
| 1737 | //Very Preliminary May-June 11 |
---|
| 1738 | //coef RT @ 1346MHz Ouest - Est associees a Ch 0 et 1 |
---|
| 1739 | r_4 calibRT[NUMBER_OF_CHANNELS] = {27.724, 22.543}; |
---|
| 1740 | for (sa_size_t icycle = ifirstCycle_; icycle <= ilastCycle_; icycle++) { |
---|
| 1741 | TMatrix<r_4> specmtx(spectreCollect[make_pair(mode,icycle)],true); //share the memory |
---|
| 1742 | for (sa_size_t iCh=0;iCh<NUMBER_OF_CHANNELS;++iCh){ |
---|
| 1743 | specmtx( Range(iCh), Range::all() ) *= calibRT[iCh]; |
---|
| 1744 | } |
---|
| 1745 | } |
---|
| 1746 | }//end loop on mode RT calib |
---|
| 1747 | |
---|
| 1748 | {//save mean spectra BAO & RT calibrated on file |
---|
| 1749 | if(debuglev_>0)cout << "save calibrated BAO & RT spectra" << endl; |
---|
| 1750 | string fileName; |
---|
[514] | 1751 | //TO BE FIXED fileName = "./" + sourceName_ + "/" + dateOfRun_ + "_" + StringToLower(sourceName_) + "_" + "dataBAORTCalib" + ".ppf"; |
---|
| 1752 | fileName = "./dataBAORTCalib_" + dateOfRun_ + "_" + StringToLower(sourceName_) + ".ppf"; |
---|
[507] | 1753 | POutPersist fos(fileName); |
---|
| 1754 | iSpectreEnd = spectreCollect.end(); |
---|
| 1755 | id = 0; |
---|
| 1756 | for (iSpectre = spectreCollect.begin();iSpectre != iSpectreEnd ; ++iSpectre, ++id) { |
---|
| 1757 | tag = "specBAORTCalib"; |
---|
[523] | 1758 | //JEC 20/9/11 modif tag to take into account Mode and Cycle number START |
---|
| 1759 | // stringstream sid; |
---|
| 1760 | // sid << id; |
---|
| 1761 | // tag += sid.str(); |
---|
| 1762 | tag += (iSpectre->first).first; |
---|
[507] | 1763 | stringstream sid; |
---|
[523] | 1764 | sid << (iSpectre->first).second; |
---|
[507] | 1765 | tag += sid.str(); |
---|
[523] | 1766 | if(debuglev_>9) { |
---|
| 1767 | cout << "save tag<" << tag << ">" << endl; |
---|
| 1768 | } |
---|
| 1769 | //JEC 20/9/11 modif tag to take into account Mode and Cycle number END |
---|
| 1770 | fos << PPFNameTag(tag) << iSpectre->second; |
---|
[507] | 1771 | } |
---|
| 1772 | }//end of save fits |
---|
| 1773 | |
---|
| 1774 | //------------------------------------------ |
---|
| 1775 | // Perform ON-OFF |
---|
| 1776 | //------------------------------------------ |
---|
| 1777 | |
---|
| 1778 | map< sa_size_t, TMatrix<r_4> > diffCollect; |
---|
| 1779 | map< sa_size_t, TMatrix<r_4> >::iterator iDiff, iDiffEnd; |
---|
| 1780 | |
---|
| 1781 | TMatrix<r_4> diffMeanOnOff(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //init zero |
---|
| 1782 | r_4 nCycles = 0; |
---|
| 1783 | for (sa_size_t icycle = ifirstCycle_; icycle <= ilastCycle_; icycle++) { |
---|
| 1784 | nCycles++; |
---|
| 1785 | TMatrix<r_4> specmtxOn(spectreCollect[make_pair(modeList[0],icycle)],false); //clone the memory |
---|
| 1786 | TMatrix<r_4> specmtxOff(spectreCollect[make_pair(modeList[1],icycle)],false); //clone the memory |
---|
| 1787 | TMatrix<r_4> diffOnOff = specmtxOn - specmtxOff; |
---|
| 1788 | diffCollect.insert(pair< sa_size_t,TMatrix<r_4> >(icycle,TMatrix<r_4>(diffOnOff,false) )); |
---|
| 1789 | diffMeanOnOff += diffOnOff; |
---|
| 1790 | }//end loop on cycle |
---|
| 1791 | if(nCycles>0) diffMeanOnOff/=nCycles; |
---|
| 1792 | |
---|
| 1793 | //exctract channels and do the mean |
---|
| 1794 | TVector<r_4> meanOfChan(NUMBER_OF_FREQ); //implicitly init to 0 |
---|
| 1795 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh) { |
---|
| 1796 | meanOfChan += diffMeanOnOff.Row(iCh).Transpose(); |
---|
| 1797 | } |
---|
| 1798 | meanOfChan /= (r_4)NUMBER_OF_CHANNELS; |
---|
| 1799 | |
---|
| 1800 | |
---|
| 1801 | |
---|
| 1802 | {//save diff ON-OFF BAO & RT calibrated |
---|
| 1803 | if(debuglev_>0)cout << "save ON-OFF spectra" << endl; |
---|
| 1804 | string fileName; |
---|
[514] | 1805 | //TO BE FIXED fileName = "./" + sourceName_ + "/" + dateOfRun_ + "_" + StringToLower(sourceName_) + "_" + "diffOnOff" + ".ppf"; |
---|
| 1806 | fileName = "./diffOnOff_" + dateOfRun_ + "_" + StringToLower(sourceName_) + ".ppf"; |
---|
[507] | 1807 | POutPersist fos(fileName); |
---|
| 1808 | iDiffEnd = diffCollect.end(); |
---|
| 1809 | id = 0; |
---|
| 1810 | for (iDiff = diffCollect.begin();iDiff != iDiffEnd ; ++iDiff, id++) { |
---|
| 1811 | tag = "specONOFF"; |
---|
| 1812 | stringstream sid; |
---|
[523] | 1813 | //JEC 20/9/11 sid << id; |
---|
| 1814 | sid << iDiff->first; |
---|
[507] | 1815 | tag += sid.str(); |
---|
[523] | 1816 | if(debuglev_>9) { |
---|
| 1817 | cout << "save tag<" << tag << ">" << endl; |
---|
| 1818 | } |
---|
| 1819 | fos << PPFNameTag(tag) << iDiff->second; |
---|
[507] | 1820 | } |
---|
| 1821 | //save the mean also |
---|
| 1822 | fos << PPFNameTag("specONOFFMean") << diffMeanOnOff; |
---|
| 1823 | fos << PPFNameTag("specONOFF2ChanMean") << meanOfChan; |
---|
| 1824 | }//end of save fits |
---|
| 1825 | |
---|
[527] | 1826 | cout << "OK dataOnOff finished"; |
---|
| 1827 | |
---|
[507] | 1828 | return rc; |
---|
| 1829 | } //ProcessONOFFData::processCmd |
---|
| 1830 | // |
---|
| 1831 | //---------------------------------------------- |
---|
| 1832 | // |
---|
| 1833 | int ProcessGain::processCmd() throw(string) { |
---|
| 1834 | int rc = 0; |
---|
| 1835 | string msg = ""; |
---|
| 1836 | |
---|
| 1837 | try { |
---|
| 1838 | rc = ProcessBase::processCmd(); |
---|
| 1839 | } |
---|
| 1840 | catch (string s) { |
---|
| 1841 | throw s; |
---|
| 1842 | } |
---|
| 1843 | if(debuglev_>0)cout << "Process Gain" << endl; |
---|
| 1844 | |
---|
| 1845 | string directoryName; |
---|
| 1846 | //TOBE FIXED directoryName = "./" + sourceName_ + "/"+ dateOfRun_ + StringToLower(sourceName_) + "/" +mode_ + "/"; |
---|
| 1847 | //JEC 6/09/2011 numcycle_ repalced by ifirstCycle_ according to definition of numcycle_ and the fact that for GAIN 1 cycle is involved |
---|
| 1848 | stringstream thegaincycle; |
---|
| 1849 | thegaincycle << ifirstCycle_; |
---|
| 1850 | directoryName = inputPath_ + "/" |
---|
| 1851 | + sourceName_ + "/" + dateOfRun_ + StringToLower(sourceName_) + "/" |
---|
| 1852 | + mode_ + "/" + spectraDirectory_ + thegaincycle.str() + "/"; |
---|
| 1853 | |
---|
| 1854 | list<string> listOfSpecFiles; |
---|
| 1855 | list<string>::const_iterator iFile, iFileEnd; |
---|
| 1856 | //read directory |
---|
| 1857 | |
---|
| 1858 | listOfSpecFiles = ListOfFileInDir(directoryName,typeOfFile_); |
---|
| 1859 | |
---|
| 1860 | //Mean power computed over the N channels to select the spectra for gain computation |
---|
| 1861 | //The threshold is computed "on-line" as 1% of the difference (max power -min power) over the |
---|
| 1862 | // the min power. |
---|
| 1863 | //A possible alternative is to set an absolute value... |
---|
| 1864 | if(debuglev_>0)cout << "compute mean poser spectra for files in " << directoryName << endl; |
---|
| 1865 | iFileEnd = listOfSpecFiles.end(); |
---|
| 1866 | map<string, r_4> meanpowerCollect; |
---|
[523] | 1867 | //JEC 21/9/11 add meanpower for each Channels START |
---|
| 1868 | map<string, r_4> meanPowerPerChanCollect; |
---|
| 1869 | //JEC 21/9/11 add meanpower for each Channels END |
---|
| 1870 | |
---|
[507] | 1871 | map<string, r_4>::const_iterator iMeanPow, iMeanPowEnd; |
---|
| 1872 | |
---|
| 1873 | for (iFile = listOfSpecFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
| 1874 | FitsInOutFile aSpectrum(*iFile,FitsInOutFile::Fits_RO); |
---|
| 1875 | TMatrix<r_4> spectre(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 1876 | aSpectrum >> spectre; |
---|
| 1877 | meanpowerCollect[*iFile] = spectre.Sum()/spectre.Size(); |
---|
[523] | 1878 | //JEC 21/9/11 add meanpower for each Channels START |
---|
| 1879 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; ++iCh) { |
---|
| 1880 | TVector<r_4> specChan(NUMBER_OF_FREQ); |
---|
| 1881 | specChan = spectre.Row(iCh).Transpose(); |
---|
| 1882 | stringstream tmp; |
---|
| 1883 | tmp << iCh; |
---|
| 1884 | string tag = *iFile + "_" + tmp.str(); |
---|
| 1885 | meanPowerPerChanCollect[tag] = specChan.Sum()/specChan.Size(); |
---|
| 1886 | } |
---|
| 1887 | //JEC 21/9/11 add meanpower for each Channels END |
---|
[507] | 1888 | }//end of for files |
---|
| 1889 | pair<string, r_4> minelement = *min_element(meanpowerCollect.begin(),meanpowerCollect.end(),compare); |
---|
| 1890 | pair<string, r_4> maxelement = *max_element(meanpowerCollect.begin(),meanpowerCollect.end(),compare); |
---|
| 1891 | if(debuglev_>1){ |
---|
| 1892 | cout << "meanpowerCollect has " << meanpowerCollect.size() << " spectra registered" << endl; |
---|
| 1893 | cout << "find min mean power "<<minelement.second << " for " << minelement.first << endl; |
---|
| 1894 | cout << "find max mean power "<<maxelement.second << " for " << maxelement.first << endl; |
---|
| 1895 | } |
---|
| 1896 | r_4 threshold = minelement.second + 0.01*(maxelement.second-minelement.second); |
---|
| 1897 | if(debuglev_>1){ |
---|
| 1898 | cout << "threshold found at " << threshold <<endl; |
---|
| 1899 | } |
---|
| 1900 | |
---|
| 1901 | TMatrix<r_4> spectreMean(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //implicit init to 0 |
---|
| 1902 | r_4 nSpectres = 0; |
---|
| 1903 | iMeanPowEnd = meanpowerCollect.end(); |
---|
| 1904 | for (iMeanPow = meanpowerCollect.begin(); iMeanPow != iMeanPowEnd; ++iMeanPow) { |
---|
| 1905 | if ( iMeanPow->second <= threshold ) { |
---|
| 1906 | //TODO avoid the reloading of the file may speed up |
---|
| 1907 | FitsInOutFile aSpectrum(iMeanPow->first,FitsInOutFile::Fits_RO); |
---|
| 1908 | TMatrix<r_4> spectre(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); |
---|
| 1909 | aSpectrum >> spectre; |
---|
| 1910 | spectreMean += spectre; |
---|
| 1911 | nSpectres++; |
---|
| 1912 | } |
---|
| 1913 | } |
---|
| 1914 | if(debuglev_>1){ |
---|
| 1915 | cout << "Number of files selected for gain " << nSpectres <<endl; |
---|
| 1916 | } |
---|
| 1917 | if(nSpectres>0) { |
---|
| 1918 | spectreMean /= nSpectres; |
---|
| 1919 | } else { |
---|
| 1920 | stringstream tmp; |
---|
| 1921 | tmp << threshold; |
---|
| 1922 | msg = "Gain: cannot find a spectra above threshold value =" + tmp.str() + " ... FATAL"; |
---|
| 1923 | throw msg; |
---|
| 1924 | } |
---|
| 1925 | |
---|
| 1926 | //Save gain spectra |
---|
| 1927 | { |
---|
| 1928 | //use ! to override the file: special features of cfitsio library |
---|
| 1929 | string fileName; |
---|
| 1930 | //TOBE FIXED fileName = "!./" + sourceName_ + "/gain_" + dateOfRun_ + "_" + StringToLower(sourceName_) + ".fits"; |
---|
| 1931 | fileName = "!"+ outputPath_ + "/gain_" + dateOfRun_ + "_" + StringToLower(sourceName_) + ".fits"; |
---|
| 1932 | if(debuglev_>1){ |
---|
| 1933 | cout << "save gains in " << fileName << endl; |
---|
| 1934 | } |
---|
| 1935 | FitsInOutFile fos(fileName, FitsInOutFile::Fits_Create); |
---|
| 1936 | fos << spectreMean; |
---|
| 1937 | } |
---|
| 1938 | //save mean power values |
---|
| 1939 | { |
---|
| 1940 | vector<r_4> tmp; |
---|
[523] | 1941 | //JEC 21/9/11 add meanpower for each Channels START |
---|
| 1942 | vector<r_4> tmpCh0; //for Chan 0 |
---|
| 1943 | vector<r_4> tmpCh1; //for Chan 1 |
---|
| 1944 | //JEC 21/9/11 add meanpower for each Channels END |
---|
[507] | 1945 | for (iFile = listOfSpecFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
[523] | 1946 | if (debuglev_>9) { |
---|
| 1947 | cout << "Gain: save mean power of file: " << *iFile << endl; |
---|
| 1948 | } |
---|
[507] | 1949 | tmp.push_back(meanpowerCollect[*iFile]); |
---|
[523] | 1950 | //JEC 21/9/11 add meanpower for each Channels START |
---|
| 1951 | stringstream tmp0; |
---|
| 1952 | tmp0 << (sa_size_t)0; |
---|
| 1953 | string tag0 = *iFile + "_" + tmp0.str(); |
---|
| 1954 | tmpCh0.push_back(meanPowerPerChanCollect[tag0]); |
---|
| 1955 | if (NUMBER_OF_CHANNELS>1){ |
---|
| 1956 | stringstream tmp1; |
---|
| 1957 | tmp1 << (sa_size_t)1; |
---|
| 1958 | string tag1 = *iFile + "_" + tmp1.str(); |
---|
| 1959 | tmpCh1.push_back(meanPowerPerChanCollect[tag1]); |
---|
| 1960 | } |
---|
| 1961 | //JEC 21/9/11 add meanpower for each Channels END |
---|
[507] | 1962 | } |
---|
| 1963 | string fileName; |
---|
| 1964 | //TOBE FIXED fileName = "./" + sourceName_ + "/gain_monitor_" + dateOfRun_ |
---|
| 1965 | fileName = outputPath_ + "/gain_monitor_" + dateOfRun_ + "_" + StringToLower(sourceName_) + ".ppf"; |
---|
| 1966 | POutPersist fos(fileName); |
---|
| 1967 | TVector<r_4> tvtmp(tmp); |
---|
[523] | 1968 | fos.PutObject(tvtmp,"gainmoni"); //Attention initialement le tag etait "monitor"... |
---|
| 1969 | //JEC 21/9/11 add meanpower for each Channels START |
---|
| 1970 | TVector<r_4> tvtmp0(tmpCh0); |
---|
| 1971 | fos.PutObject(tvtmp0,"gainmoni0"); |
---|
| 1972 | if (NUMBER_OF_CHANNELS>1){ |
---|
| 1973 | TVector<r_4> tvtmp1(tmpCh1); |
---|
| 1974 | fos.PutObject(tvtmp1,"gainmoni1"); |
---|
| 1975 | } |
---|
| 1976 | //JEC 21/9/11 add meanpower for each Channels END |
---|
[507] | 1977 | } |
---|
| 1978 | |
---|
| 1979 | cout << "OK gain finished" <<endl; |
---|
| 1980 | return rc; |
---|
| 1981 | }//ProcessGain::processCmd |
---|
| 1982 | // |
---|
| 1983 | //---------------------------------------------- |
---|
| 1984 | // |
---|
| 1985 | int ProcessCalibration::processCmd() throw(string) { |
---|
| 1986 | int rc = 0; |
---|
| 1987 | string msg = ""; |
---|
| 1988 | |
---|
| 1989 | try { |
---|
| 1990 | rc = ProcessBase::processCmd(); |
---|
| 1991 | } |
---|
| 1992 | catch (string s) { |
---|
| 1993 | throw s; |
---|
| 1994 | } |
---|
| 1995 | if(debuglev_>0)cout << "Process Calibration with option "<< option_ << endl; |
---|
| 1996 | |
---|
| 1997 | vector<string> modeList; |
---|
| 1998 | modeList.push_back("On"); |
---|
| 1999 | modeList.push_back("Off"); |
---|
| 2000 | |
---|
| 2001 | r_8 t0absolute = -1; //TIMEWIN of the first spectra used |
---|
| 2002 | r_8 timeTag0 = -1; //MEANTT, mean TIME TAG of the first paquet window |
---|
| 2003 | bool first = true; // for initialisation |
---|
| 2004 | |
---|
| 2005 | // Power Tuple |
---|
| 2006 | // mode, cycle, time, {Ch0, ... ,ChN} mean poser in the range [f0-Bw/2, f0+Bw/2] |
---|
| 2007 | vector<string> varPowerTupleName; //ntuple variable naming |
---|
| 2008 | varPowerTupleName.push_back("mode"); |
---|
| 2009 | varPowerTupleName.push_back("cycle"); |
---|
| 2010 | varPowerTupleName.push_back("time"); |
---|
| 2011 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS;++iCh){ |
---|
| 2012 | stringstream tmp; |
---|
| 2013 | tmp << iCh; |
---|
| 2014 | varPowerTupleName.push_back("Ch"+tmp.str()); |
---|
| 2015 | } |
---|
| 2016 | r_4 valPowerTuple[varPowerTupleName.size()]; |
---|
| 2017 | NTuple powerEvolution(varPowerTupleName); |
---|
| 2018 | |
---|
| 2019 | |
---|
| 2020 | //----------------- |
---|
| 2021 | //Start real process |
---|
| 2022 | //------------------ |
---|
| 2023 | for (size_t iMode = 0; iMode < modeList.size(); ++iMode) { |
---|
| 2024 | string mode = modeList[iMode]; |
---|
| 2025 | if(debuglev_>0)cout << "Process Calibration for Mode " << mode << endl; |
---|
| 2026 | |
---|
| 2027 | //initialize the start of each calibration procedure given by the RT SCA file |
---|
| 2028 | //see ProcessBase::processCmd for the structure of the sca file |
---|
| 2029 | string scaStartCalibName = "stcal"+mode; |
---|
| 2030 | sa_size_t idStartCalib = scaTuple_->ColumnIndex(scaStartCalibName); |
---|
| 2031 | |
---|
| 2032 | string directoryName; |
---|
| 2033 | list<string> listOfSpecFiles; |
---|
| 2034 | list<string>::const_iterator iFile, iFileEnd; |
---|
| 2035 | // |
---|
| 2036 | //loop on cycles |
---|
| 2037 | // |
---|
| 2038 | for (sa_size_t icycle = ifirstCycle_; icycle <= ilastCycle_; icycle++) { |
---|
| 2039 | |
---|
| 2040 | directoryName = inputPath_ + "/" |
---|
| 2041 | + sourceName_ + "/"+ dateOfRun_ + StringToLower(sourceName_) + "/" +mode + "/"; |
---|
| 2042 | stringstream sicycle; |
---|
| 2043 | sicycle << icycle; |
---|
| 2044 | directoryName += spectraDirectory_ + sicycle.str() + "/"; |
---|
| 2045 | |
---|
| 2046 | //read directory |
---|
| 2047 | listOfSpecFiles = ListOfFileInDir(directoryName,typeOfFile_); |
---|
| 2048 | |
---|
| 2049 | iFileEnd = listOfSpecFiles.end(); |
---|
| 2050 | DVList header; |
---|
| 2051 | TMatrix<r_4> spectre(NUMBER_OF_CHANNELS,NUMBER_OF_FREQ); //implicit init to 0 |
---|
| 2052 | |
---|
| 2053 | for (iFile = listOfSpecFiles.begin(); iFile != iFileEnd; ++iFile) { |
---|
| 2054 | FitsInOutFile aSpectrum(*iFile,FitsInOutFile::Fits_RO); |
---|
| 2055 | aSpectrum.GetHeaderRecords(header); |
---|
| 2056 | aSpectrum >> spectre; |
---|
| 2057 | |
---|
| 2058 | if(first){//initialise the timer |
---|
| 2059 | first = false; |
---|
| 2060 | t0absolute = header.GetD("TIMEWIN")/1000.; |
---|
| 2061 | timeTag0 = header.GetD("MEANTT"); |
---|
| 2062 | if (debuglev_>1){ |
---|
| 2063 | cout << "debug Header of " << *iFile << endl; |
---|
| 2064 | cout << "TIMEWIN = " << setprecision(12) << t0absolute << " " |
---|
| 2065 | << "MEANTT = " << setprecision(12) << timeTag0 << endl; |
---|
| 2066 | } |
---|
| 2067 | }//end init timer |
---|
| 2068 | |
---|
| 2069 | //Set time of current file |
---|
| 2070 | //Add to the non-precise absolute origin an precise increment |
---|
| 2071 | r_4 timeTag = t0absolute + (header.GetD("MEANTT") - timeTag0); |
---|
| 2072 | int index=0; |
---|
| 2073 | valPowerTuple[index++] = iMode; |
---|
| 2074 | valPowerTuple[index++] = icycle; |
---|
| 2075 | valPowerTuple[index++] = timeTag-scaTuple_->GetCell(idCycleInTuple_[icycle],idStartCalib); //take the RT time start as refernce |
---|
| 2076 | |
---|
| 2077 | //Compute the mean power of the two channel (separatly) in the range [f-bw/2, f+bw/2] |
---|
| 2078 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS;++iCh){ |
---|
| 2079 | TMatrix<r_4> tmp(spectre(Range(iCh),Range(lowerFreqBin_,upperFreqBin_)),false); |
---|
| 2080 | r_4 mean = tmp.Sum()/(r_4)tmp.Size(); |
---|
| 2081 | valPowerTuple[index++] = mean; |
---|
| 2082 | }//end of channel loop |
---|
| 2083 | |
---|
| 2084 | //Fill Tuple |
---|
| 2085 | powerEvolution.Fill(valPowerTuple); |
---|
| 2086 | }//end of files loop |
---|
| 2087 | }//end of cycles loop |
---|
| 2088 | }//end of mode loop |
---|
| 2089 | |
---|
| 2090 | //store power evolution Tuple |
---|
| 2091 | if(debuglev_>0){ |
---|
| 2092 | cout << "ProcessCalibration::processCmd: dump powerEvolution tuple" << endl; |
---|
| 2093 | powerEvolution.Show(cout); |
---|
| 2094 | } |
---|
| 2095 | // |
---|
| 2096 | //Compute Calibration Coefficients as function of mode/cycle/channels |
---|
| 2097 | // |
---|
| 2098 | |
---|
| 2099 | //Tsys,Incremant Intensity... Tuple |
---|
| 2100 | //mode mode cycle [(tsys0,dint0),...,(tsysN,dintN)] |
---|
| 2101 | vector<string> varCalibTupleName; |
---|
| 2102 | varCalibTupleName.push_back("mode"); |
---|
| 2103 | varCalibTupleName.push_back("cycle"); |
---|
| 2104 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS;++iCh){ |
---|
| 2105 | stringstream tmp; |
---|
| 2106 | tmp << iCh; |
---|
| 2107 | varCalibTupleName.push_back("tsys"+tmp.str()); |
---|
| 2108 | varCalibTupleName.push_back("dint"+tmp.str()); |
---|
| 2109 | } |
---|
| 2110 | r_4 valCalibTuple[varCalibTupleName.size()]; |
---|
| 2111 | NTuple calibEvolution(varCalibTupleName); |
---|
| 2112 | |
---|
| 2113 | // select time E [twin0,twin1] U [twin2,twin3] for Tsys |
---|
| 2114 | // time unit = second |
---|
| 2115 | const r_4 twin0 = -3.; |
---|
| 2116 | const r_4 twin1 = -1.; |
---|
| 2117 | const r_4 twin2 = 6.; |
---|
| 2118 | const r_4 twin3 = 8; |
---|
[584] | 2119 | const r_4 thresholdFactor = 0.20; //80% of the diff. Max-Min intensity |
---|
[507] | 2120 | |
---|
| 2121 | sa_size_t inModeIdx = powerEvolution.ColumnIndex("mode"); |
---|
| 2122 | sa_size_t inCycleIdx= powerEvolution.ColumnIndex("cycle"); |
---|
| 2123 | sa_size_t inTimeIdx = powerEvolution.ColumnIndex("time"); |
---|
| 2124 | sa_size_t inOffsetCh0 = powerEvolution.ColumnIndex("Ch0"); //nb Ch0 position in the powerEvolution tuple |
---|
| 2125 | if(debuglev_>1) cout << "DEBUG: in Idx: (" |
---|
| 2126 | << inModeIdx << ", " |
---|
| 2127 | << inCycleIdx << ", " |
---|
| 2128 | << inTimeIdx << ", " |
---|
| 2129 | << inOffsetCh0 << ")" |
---|
| 2130 | << endl; |
---|
| 2131 | |
---|
| 2132 | |
---|
| 2133 | size_t outModeIdx = calibEvolution.ColumnIndex("mode"); |
---|
| 2134 | size_t outCycleIdx= calibEvolution.ColumnIndex("cycle"); |
---|
| 2135 | size_t outOffsetCh0 = calibEvolution.ColumnIndex("tsys0"); //nb Ch0 position in the monitor tuple |
---|
| 2136 | size_t outNDataPerCh= 2; |
---|
| 2137 | if(debuglev_>1) cout << "DEBUG: out Idx: (" |
---|
| 2138 | << outModeIdx << ", " |
---|
| 2139 | << outCycleIdx << ", " |
---|
| 2140 | << outOffsetCh0 << ")" |
---|
| 2141 | << endl; |
---|
| 2142 | |
---|
| 2143 | sa_size_t nPowerEvolEntry = powerEvolution.NEntry(); |
---|
| 2144 | double minMode; |
---|
| 2145 | double maxMode; |
---|
| 2146 | powerEvolution.GetMinMax("mode",minMode,maxMode); |
---|
| 2147 | double minCycleNum; |
---|
| 2148 | double maxCycleNum; |
---|
| 2149 | powerEvolution.GetMinMax("cycle",minCycleNum,maxCycleNum); |
---|
| 2150 | if(debuglev_>1) cout << "DEBUG mode ("<<minMode<<","<<maxMode<<")\n" |
---|
| 2151 | << "cycle ("<<minCycleNum<<","<<maxCycleNum<<")" |
---|
| 2152 | << endl; |
---|
| 2153 | |
---|
| 2154 | r_4* aPowerEvolEntry; // a ligne of the powerEvolution tuple |
---|
| 2155 | // r_4* aPowerEvolEntry = new r_4[powerEvolution.NbColumns()]; // a ligne of the powerEvolution tuple |
---|
| 2156 | |
---|
| 2157 | r_4 minMean; |
---|
| 2158 | r_4 maxMean; |
---|
| 2159 | |
---|
| 2160 | for (size_t iMode = (size_t)minMode; iMode <= (size_t)maxMode; iMode++){ |
---|
| 2161 | for (size_t iCycle = (size_t)minCycleNum; iCycle <= (size_t)maxCycleNum; iCycle++ ){ |
---|
| 2162 | if(debuglev_>1) cout<<"DEBUG >>>>>>> mode/cycle: " << iMode << "/" << iCycle << endl; |
---|
| 2163 | |
---|
| 2164 | valCalibTuple[outModeIdx]=iMode; |
---|
| 2165 | valCalibTuple[outCycleIdx]=iCycle; |
---|
| 2166 | // |
---|
| 2167 | //Compute the Min && Max value of each Ch<i> data |
---|
| 2168 | if(debuglev_>1) cout<<"DEBUG compute Min and Max for each channels" << endl; |
---|
| 2169 | // |
---|
| 2170 | TVector<r_4> chMean[NUMBER_OF_CHANNELS]; |
---|
| 2171 | for (sa_size_t iCh=0;iCh<NUMBER_OF_CHANNELS;iCh++){ |
---|
| 2172 | chMean[iCh].SetSize(nPowerEvolEntry); |
---|
| 2173 | } |
---|
| 2174 | for (sa_size_t ie=0; ie<nPowerEvolEntry; ie++){ |
---|
| 2175 | aPowerEvolEntry = powerEvolution.GetVec(ie); |
---|
| 2176 | if ( (size_t)aPowerEvolEntry[inModeIdx] == iMode && (size_t)aPowerEvolEntry[inCycleIdx] == iCycle ){ |
---|
| 2177 | for (sa_size_t iCh=0;iCh<NUMBER_OF_CHANNELS;iCh++){ |
---|
| 2178 | chMean[iCh](ie) = aPowerEvolEntry[iCh+inOffsetCh0]; |
---|
| 2179 | }//end cut |
---|
| 2180 | } |
---|
| 2181 | }//eo loop on tuple entries |
---|
| 2182 | for (sa_size_t iCh=0;iCh<NUMBER_OF_CHANNELS;iCh++){ |
---|
| 2183 | // |
---|
| 2184 | //select values to compute background Tsys |
---|
| 2185 | if(debuglev_>1) { |
---|
| 2186 | cout<< "DEBUG >>>> Ch[" << iCh << "]" << endl; |
---|
| 2187 | cout<< "DEBUG select values to compute background Tsys " << endl; |
---|
| 2188 | } |
---|
| 2189 | // |
---|
| 2190 | |
---|
| 2191 | std::vector<r_4> lowerInt; |
---|
| 2192 | for (sa_size_t ie=0; ie<nPowerEvolEntry; ie++){ |
---|
| 2193 | aPowerEvolEntry = powerEvolution.GetVec(ie); |
---|
| 2194 | if ( (size_t)aPowerEvolEntry[inModeIdx] == iMode && (size_t)aPowerEvolEntry[inCycleIdx] == iCycle ){ |
---|
| 2195 | r_4 time = aPowerEvolEntry[inTimeIdx]; |
---|
| 2196 | if ( (time >= twin0 && time <= twin1) || |
---|
| 2197 | (time >= twin2 && time <= twin3) |
---|
| 2198 | ) lowerInt.push_back(aPowerEvolEntry[iCh+inOffsetCh0]); |
---|
| 2199 | }//end cut |
---|
| 2200 | } //end loop entries |
---|
| 2201 | // |
---|
| 2202 | //compute the Tsys |
---|
| 2203 | if(debuglev_>1) cout <<"DEBUG compute Tsys" << endl; |
---|
| 2204 | // |
---|
| 2205 | std::nth_element(lowerInt.begin(), |
---|
| 2206 | lowerInt.begin()+lowerInt.size()/2, |
---|
| 2207 | lowerInt.end()); |
---|
| 2208 | r_4 tsys = *(lowerInt.begin()+lowerInt.size()/2); |
---|
| 2209 | if(debuglev_>1) cout << "DEBUG tsys["<<iCh<<"] : " << tsys <<endl; |
---|
| 2210 | // |
---|
| 2211 | //set the threshold for DAB detection |
---|
| 2212 | // |
---|
| 2213 | chMean[iCh].MinMax(minMean,maxMean); |
---|
| 2214 | minMean = (tsys > minMean) ? tsys : minMean; //pb of empty vector |
---|
| 2215 | if(debuglev_>1) cout << "DEBUG min["<<iCh<<"] : " << minMean |
---|
| 2216 | << " max["<<iCh<<"] : " << maxMean |
---|
| 2217 | <<endl; |
---|
| 2218 | r_4 deltathres = thresholdFactor * (maxMean-minMean); |
---|
| 2219 | r_4 thres = tsys + deltathres; |
---|
| 2220 | if(debuglev_>1) cout << "DEBUG thres["<<iCh<<"] : " << thres <<endl; |
---|
| 2221 | // |
---|
| 2222 | //collect upper part of the DAB |
---|
| 2223 | if(debuglev_>1) cout <<"DEBUG collect upper part of the DAB" << endl; |
---|
| 2224 | // |
---|
| 2225 | std::vector<r_4> upperInt; |
---|
| 2226 | for (sa_size_t ie=0; ie<nPowerEvolEntry; ie++){ |
---|
| 2227 | aPowerEvolEntry = powerEvolution.GetVec(ie); |
---|
| 2228 | if ( (size_t)aPowerEvolEntry[inModeIdx] == iMode && (size_t)aPowerEvolEntry[inCycleIdx] == iCycle ){ |
---|
| 2229 | r_4 mean = aPowerEvolEntry[iCh+inOffsetCh0]; |
---|
| 2230 | if (mean >= thres) upperInt.push_back(mean); |
---|
| 2231 | }//end cut |
---|
| 2232 | }//eo loop on channels |
---|
| 2233 | // |
---|
| 2234 | //compute adjacent differences to detect the 2 DAB levels |
---|
| 2235 | // |
---|
| 2236 | if(debuglev_>1) cout << "(DEBUG )size upper [" << iCh << "]: " << upperInt.size() <<endl; |
---|
| 2237 | std::vector<r_4> upperIntAdjDiff(upperInt.size()); |
---|
| 2238 | std::adjacent_difference(upperInt.begin(), |
---|
| 2239 | upperInt.end(), |
---|
| 2240 | upperIntAdjDiff.begin()); |
---|
| 2241 | // |
---|
| 2242 | //Search the 2 DAB states |
---|
| 2243 | if(debuglev_>1) cout<<"DEBUG Search the 2 DAB states" << endl; |
---|
| 2244 | // |
---|
| 2245 | std::vector<r_4> upIntState[2]; |
---|
| 2246 | int state=-1; |
---|
| 2247 | for (size_t i=1;i<upperInt.size();i++) {//skip first value |
---|
| 2248 | if (fabs(upperIntAdjDiff[i])<upperInt[i]*0.010) { |
---|
| 2249 | if(state == -1) state=0; |
---|
| 2250 | if(state == -2) state=1; |
---|
| 2251 | upIntState[state].push_back(upperInt[i]); |
---|
| 2252 | } else { |
---|
| 2253 | if (state == 0) state=-2; |
---|
| 2254 | } |
---|
| 2255 | } |
---|
| 2256 | // |
---|
| 2257 | //Take the mean of the median values of each levels |
---|
| 2258 | if(debuglev_>1)cout << "DEBUG mean of the median values of each levels" << endl; |
---|
| 2259 | // |
---|
| 2260 | r_4 meanUpper = 0; |
---|
| 2261 | r_4 nval = 0; |
---|
| 2262 | for (int i=0;i<2;i++) { |
---|
| 2263 | if (!upIntState[i].empty()) { |
---|
[595] | 2264 | // std::nth_element(upIntState[i].begin(), |
---|
| 2265 | // upIntState[i].begin()+upIntState[i].size()/2, |
---|
| 2266 | // upIntState[i].end()); |
---|
| 2267 | // meanUpper += *(upIntState[i].begin()+upIntState[i].size()/2); |
---|
| 2268 | meanUpper += median(upIntState[i].begin(),upIntState[i].end()); |
---|
[507] | 2269 | nval++; |
---|
| 2270 | } |
---|
| 2271 | } |
---|
| 2272 | meanUpper /= nval; |
---|
| 2273 | // |
---|
| 2274 | //Finaly the increase of power due to the DAB is: |
---|
| 2275 | // |
---|
| 2276 | r_4 deltaInt = meanUpper - tsys; |
---|
| 2277 | if(debuglev_>1) cout << "DEBUG deltaInt["<<iCh<<"] : " << deltaInt <<endl; |
---|
| 2278 | // |
---|
| 2279 | //Save for monitoring and final calibration operations |
---|
| 2280 | // |
---|
| 2281 | valCalibTuple[outOffsetCh0+outNDataPerCh*iCh] = tsys; |
---|
| 2282 | valCalibTuple[outOffsetCh0+outNDataPerCh*iCh+1] = deltaInt; |
---|
| 2283 | }//end loop on channels |
---|
| 2284 | if(debuglev_>1) cout<<"DEBUG Fill the calibEvolution tuple" << endl; |
---|
| 2285 | calibEvolution.Fill(valCalibTuple); |
---|
| 2286 | }//eo loop on Cycles |
---|
| 2287 | }//eo loop on Modes |
---|
| 2288 | // |
---|
| 2289 | //store calibration evolution Tuple |
---|
| 2290 | // |
---|
| 2291 | if(debuglev_>0){ |
---|
| 2292 | cout << "ProcessCalibration::processCmd: dump calibEvolution tuple" << endl; |
---|
| 2293 | calibEvolution.Show(cout); |
---|
| 2294 | } |
---|
| 2295 | // |
---|
| 2296 | //Compute the means per channel of the calibration coefficients (deltaInt) |
---|
| 2297 | //and save cycle based Calibration Ctes in file named as |
---|
| 2298 | // <source>-<date>-<mode>-<fcalib>MHz-Ch<channel>Cycles.txt |
---|
| 2299 | // format <cycle> <coef> |
---|
| 2300 | //the means are stored in files |
---|
| 2301 | // <source>-<date>-<mode>-<fcalib>MHz-All.txt |
---|
| 2302 | // format <channel> <coef> |
---|
| 2303 | // |
---|
| 2304 | sa_size_t nModes = (sa_size_t)(maxMode - minMode) + 1; |
---|
| 2305 | string calibCoefFileName; |
---|
| 2306 | ofstream calibMeanCoefFile[nModes]; //Mean over cycles |
---|
| 2307 | ofstream calibCoefFile[nModes][NUMBER_OF_CHANNELS]; //cycle per cycle |
---|
| 2308 | for (sa_size_t iMode=0; iMode<nModes; iMode++){ |
---|
| 2309 | //The file for the Means Coeff. |
---|
| 2310 | calibCoefFileName = outputPath_ + "/calib_" |
---|
| 2311 | + dateOfRun_ + "_" + StringToLower(sourceName_) + "_" |
---|
| 2312 | + modeList[iMode] + "_" |
---|
| 2313 | + freqBAOCalibration_ + "MHz-All.txt"; |
---|
| 2314 | calibMeanCoefFile[iMode].open(calibCoefFileName.c_str()); |
---|
| 2315 | //The file for the cycle per cycle Coeff. |
---|
| 2316 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; iCh++){ |
---|
| 2317 | stringstream chString; |
---|
| 2318 | chString << iCh; |
---|
| 2319 | calibCoefFileName = outputPath_ + "/calib_" |
---|
| 2320 | + dateOfRun_ + "_" + StringToLower(sourceName_) + "_" |
---|
| 2321 | + modeList[iMode] + "_" |
---|
| 2322 | + freqBAOCalibration_ + "MHz-Ch" + chString.str() + "Cycles.txt"; |
---|
| 2323 | calibCoefFile[iMode][iCh].open(calibCoefFileName.c_str()); |
---|
| 2324 | } |
---|
| 2325 | } |
---|
| 2326 | |
---|
| 2327 | r_4* aCalibEvolEntry; |
---|
| 2328 | sa_size_t nCalibEvolEntry = calibEvolution.NEntry(); |
---|
| 2329 | |
---|
| 2330 | TMatrix<r_4> meanCalibCoef(nModes,NUMBER_OF_CHANNELS); //by default init to 0 |
---|
| 2331 | TMatrix<r_4> nData4Mean(nModes,NUMBER_OF_CHANNELS); |
---|
| 2332 | |
---|
| 2333 | //READ the calibration tuple, fill the array for mean and write to ascii file |
---|
| 2334 | for (sa_size_t ie=0; ie<nCalibEvolEntry; ie++){ |
---|
| 2335 | aCalibEvolEntry = calibEvolution.GetVec(ie); |
---|
| 2336 | if(debuglev_>1){ |
---|
| 2337 | cout << "DEBUG mode/cycle/Coef " |
---|
| 2338 | << aCalibEvolEntry[outModeIdx] << " " |
---|
| 2339 | << aCalibEvolEntry[outCycleIdx] << " "; |
---|
| 2340 | } |
---|
| 2341 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; iCh++){ |
---|
| 2342 | if(debuglev_>1) cout << aCalibEvolEntry[outOffsetCh0+outNDataPerCh*iCh+1] << " "; // for debug |
---|
| 2343 | sa_size_t currentMode = (sa_size_t)(aCalibEvolEntry[outModeIdx] - minMode); //ok even if minMode <> 0 |
---|
| 2344 | nData4Mean(currentMode,iCh)++; |
---|
| 2345 | meanCalibCoef(currentMode,iCh) += aCalibEvolEntry[outOffsetCh0+outNDataPerCh*iCh+1]; |
---|
| 2346 | |
---|
| 2347 | calibCoefFile[currentMode][iCh] << aCalibEvolEntry[outCycleIdx] << " " |
---|
| 2348 | << setprecision(12) |
---|
| 2349 | << aCalibEvolEntry[outOffsetCh0+outNDataPerCh*iCh+1] |
---|
| 2350 | << endl; |
---|
| 2351 | } |
---|
| 2352 | if(debuglev_>1) cout << endl; //for debug |
---|
| 2353 | } |
---|
| 2354 | |
---|
| 2355 | //Perform means: true means that div per 0 is treated (slower but safer) |
---|
| 2356 | meanCalibCoef.Div(nData4Mean,true); |
---|
| 2357 | |
---|
| 2358 | if(debuglev_>0){ |
---|
| 2359 | cout << "DEBUG nData4Mean" << endl; |
---|
| 2360 | nData4Mean.Print(cout); |
---|
| 2361 | cout << "DEBUG meanCalibCoef (averaged)" << endl; |
---|
| 2362 | meanCalibCoef.Print(cout); |
---|
| 2363 | } |
---|
| 2364 | |
---|
| 2365 | //Save means Coef |
---|
| 2366 | for (sa_size_t iMode=0; iMode<nModes; iMode++){ |
---|
| 2367 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; iCh++){ |
---|
| 2368 | calibMeanCoefFile[iMode] << setprecision(12) |
---|
| 2369 | << meanCalibCoef(iMode,iCh) |
---|
| 2370 | << endl; |
---|
| 2371 | } |
---|
| 2372 | } |
---|
| 2373 | |
---|
| 2374 | //Save Monitor File |
---|
| 2375 | { |
---|
| 2376 | string fileName = outputPath_ + "/calib_monitor_" + dateOfRun_ + "_" + StringToLower(sourceName_) + ".ppf"; |
---|
| 2377 | POutPersist calibMonitorFile(fileName); |
---|
| 2378 | calibMonitorFile << PPFNameTag("powermoni") << powerEvolution; |
---|
| 2379 | calibMonitorFile << PPFNameTag("calibmoni") << calibEvolution; |
---|
| 2380 | } |
---|
| 2381 | |
---|
| 2382 | //Clean & Return |
---|
| 2383 | for (sa_size_t iMode=0; iMode<nModes; iMode++){ |
---|
| 2384 | calibMeanCoefFile[iMode].close(); |
---|
| 2385 | for (sa_size_t iCh=0; iCh<NUMBER_OF_CHANNELS; iCh++){ |
---|
| 2386 | calibCoefFile[iMode][iCh].close(); |
---|
| 2387 | } |
---|
| 2388 | } |
---|
| 2389 | |
---|
| 2390 | cout << "Ok calibration finished" << endl; |
---|
| 2391 | return rc; |
---|
| 2392 | }//ProcessCalibration::processCmd |
---|
| 2393 | |
---|