| 1 | #!/bin/sh
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| 2 | #Perform the ON-OFF analysis
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| 3 | DATE=/bin/date
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| 4 | GREP=/bin/grep
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| 5 | AWK=/bin/awk
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| 6 | ECHO=/bin/echo
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| 7 | WC=/usr/bin/wc
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| 8 | CAT=/bin/cat
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| 9 | PRINTF=/usr/bin/printf
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| 10 | FIND=/usr/bin/find
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| 11 | MKDIR=/bin/mkdir
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| 12 | XARGS=/usr/bin/xargs
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| 13 | SORT=/bin/sort
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| 14 | RM=/bin/rm
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| 15 | TR=/usr/bin/tr
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| 16 | CP=/bin/cp
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| 17 | LS=/bin/ls
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| 18 | CHMOD=/bin/chmod
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| 19 |
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| 20 | DefaultIFS=$' \t\n'
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| 21 | IFS=$DefaultIFS
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| 22 |
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| 23 | #set Irods environment
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| 24 | . /usr/local/shared/bin/irods_env.sh -noverbose
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| 25 |
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| 26 | scriptName="`basename $0`"
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| 27 | $ECHO "Processing script ${scriptName} at `date`"
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| 28 | #which source to analyse
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| 29 |
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| 30 | #Process cmd line args: the -src option is mandatory (source name as Abell85)
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| 31 | sourceRadio=
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| 32 | dateSelected=
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| 33 | #use -sim option to simulate processing (debug the script as if...)
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| 34 | simulationMode=Off
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| 35 | while [ $# -gt 0 ]
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| 36 | do
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| 37 | case "$1" in
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| 38 | -src) sourceRadio=$2; shift;;
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| 39 | -date) dateSelected=$2; shift;;
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| 40 | -sim) simulationMode=On;;
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| 41 | -h)
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| 42 | echo >&2 \
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| 43 | "usage: $0 -src souce -date YYYYMMDD [-freq freq in MHz (default ${freqBAOCalib})] [-sim to trig simulation mode]"
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| 44 | exit 1;;
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| 45 | *) break;; # terminate while loop
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| 46 | esac
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| 47 | shift
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| 48 | done
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| 49 |
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| 50 | if [ ${simulationMode} = "On" ]; then
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| 51 | $ECHO "INFO ${scriptName} running in SIMUL mode"
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| 52 | fi
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| 53 |
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| 54 | if [ "<${sourceRadio}>" = "<>" ]; then
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| 55 | $ECHO "FATAL: You have forgotten to select the source option (-src)"
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| 56 | exit 1
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| 57 | fi
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| 58 |
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| 59 | case ${sourceRadio} in
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| 60 | Abell85) $ECHO "INFO (${scriptName}): process ${sourceRadio}";;
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| 61 | Abell2440) $ECHO "INFO (${scriptName}): process ${sourceRadio}";;
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| 62 | Abell1205) $ECHO "INFO (${scriptName}): process ${sourceRadio}";;
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| 63 | NGC4383) $ECHO "INFO (${scriptName}): process ${sourceRadio}";;
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| 64 | *) ECHO "FATAL (${scriptName}): process ${sourceRadio} not yet foreseen"
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| 65 | exit 1;;
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| 66 | esac
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| 67 |
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| 68 | srclower=`${ECHO} ${sourceRadio} | ${TR} "[:upper:]" "[:lower:]" `
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| 69 |
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| 70 | #Path to public backupable path
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| 71 | publicpath="/afs/in2p3.fr/home/c/campagne/public"
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| 72 |
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| 73 |
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| 74 | #temporary files to synchronize scripts
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| 75 | tmppublicpath=${TMPPUBLICPATH}
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| 76 | #wakeup the NFS disk
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| 77 | $LS -l ${tmppublicpath} > /dev/null
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| 78 | #clean previous spurious files
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| 79 | $RM -f ${tmppublicpath}/*.finished
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| 80 |
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| 81 | #Path where the job will do temporary IO
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| 82 | . ${SCRIPTPATH}/isInteractive.sh
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| 83 | isInteractive=$(isInteractive)
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| 84 | if [ ${isInteractive} == "1" ]; then
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| 85 | $ECHO "Usage in INTERACTIVE may be destructive... To be used with great care !!!!"
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| 86 | exit 0;
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| 87 | fi
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| 88 |
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| 89 | . ${SCRIPTPATH}/set_iojobpath.sh
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| 90 | iojobpath=$(set_iojobpath)
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| 91 | cd ${iojobpath}
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| 92 |
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| 93 | localpath="${sourceRadio}"
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| 94 | $MKDIR -p ./${localpath}
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| 95 | cd ./${localpath}
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| 96 |
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| 97 | #save the top directory
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| 98 | topDir=`pwd`
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| 99 |
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| 100 | #Path of the utility scripts
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| 101 | scriptpath=${SCRIPTPATH}
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| 102 |
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| 103 | #get the daq current irod status
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| 104 | #tag=`${DATE} +%F`
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| 105 | #OUT1=${publicpath}/baodaqstatus-${tag}.txt
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| 106 | ####JEC 1/10/11 tag=`${DATE} +%F`
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| 107 | #Use generic baodaqstatus name
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| 108 | OUT1=${publicpath}/baodaqstatus-current.txt
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| 109 |
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| 110 | if [ ! -e ${OUT1} -o ! -r ${OUT1} ]; then
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| 111 | $ECHO "FATAL (${scriptName}): ${OUT1} has a problem"
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| 112 | exit 1
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| 113 | #JEC 29/9/11 avoid finished stuff
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| 114 | # $RM -f ${tmppublicpath}/statusdaq.finished
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| 115 | # ${scriptpath}/statusdaq.sh > ${OUT1}
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| 116 | # while [ ! -f "${tmppublicpath}/statusdaq.finished" ]; do
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| 117 | # sleep 30
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| 118 | # done
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| 119 | # $RM ${tmppublicpath}/statusdaq.finished
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| 120 | #protect against remove/rewriting
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| 121 | # $CHMOD -v 444 ${OUT1}
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| 122 | fi
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| 123 |
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| 124 |
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| 125 |
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| 126 |
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| 127 | #Nb: if we want to implement a loop on sources we have to take care of srclower...
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| 128 |
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| 129 | $ECHO "You have selected sourceRadio = ${sourceRadio} [date = ${dateSelected}]"
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| 130 | tableau=( `$GREP -i "${dateSelected}${srclower}" ${OUT1} | $AWK '( NF==4 ) { print $2 }' ` )
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| 131 | IFS='
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| 132 | '
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| 133 | tableau=( $( $PRINTF "%s\n" "${tableau[@]}" | $AWK 'x[$0]++ == 0' ) )
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| 134 | IFS=$DefaultIFS
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| 135 |
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| 136 |
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| 137 | for i in ${tableau[@]}
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| 138 | do
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| 139 | #
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| 140 | # start a "fresh" session
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| 141 | cd ${topDir}
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| 142 | $LS | $XARGS -i $RM -rf {}
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| 143 |
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| 144 | $ECHO "DEBUG: (${scriptName}) irods root dir $i"
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| 145 | dateDAQ=`$ECHO ${i} | $AWK '{split($0,a,"/"); print a[6];}' | $AWK "{sub(/${srclower}/,\"\"); print}"`
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| 146 |
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| 147 | $ECHO "DEBUG: (${scriptName}): we are in directory `pwd` the topDir=${topDir}"
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| 148 | $LS -lrt
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| 149 |
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| 150 | #JEC 1/10/11 Use generic baodaqstatus name
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| 151 | #Look if the date has changed since beginning of the job!
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| 152 | # curtag=`${DATE} +%F`
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| 153 | # if [ "<${curtag}>" != "<${tag}>" ]; then
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| 154 | # tag=${curtag}
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| 155 | #it is necessary to update the daq status as the day has changed during the processing... (batch can take a long time...)
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| 156 | # OUT1=${publicpath}/baodaqstatus-${curtag}.txt
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| 157 | # $ECHO "We should bring the DAQ status more up to date, this take 1 or 2sec..."
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| 158 | # $RM -f ${tmppublicpath}/statusdaq.finished
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| 159 | # ${scriptpath}/statusdaq.sh > ${OUT1}
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| 160 | # while [ ! -f "${tmppublicpath}/statusdaq.finished" ]; do
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| 161 | # sleep 30
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| 162 | # done
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| 163 | # $RM ${tmppublicpath}/statusdaq.finished
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| 164 | #protect against remove/rewriting
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| 165 | # $CHMOD -v 444 ${OUT1}
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| 166 | # fi
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| 167 | #
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| 168 | # look if the gain & calibration files exist
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| 169 | #
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| 170 | gainDone=`ils ${i} 2>&1 | $GREP -i "gain_.*\.fits" | $WC -l`
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| 171 | if [ ! ${gainDone} -gt 0 ]; then
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| 172 | $ECHO "FATAL (${scriptName}): gain file DOES NOT exist skip `basename $i` "
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| 173 | continue
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| 174 | fi
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| 175 |
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| 176 | #
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| 177 | somethingTodo=1
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| 178 | input4dataOff=`ils ${i}/Off 2>&1 | $GREP -i "datacycle" | $AWK 'BEGIN{FS="C- "}{print $2}' | $XARGS -i basename {} | $SORT -k1.10n`
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| 179 | input4dataOn=`ils ${i}/On 2>&1 | $GREP -i "datacycle" | $AWK 'BEGIN{FS="C- "}{print $2}' | $XARGS -i basename {} | $SORT -k1.10n`
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| 180 | #
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| 181 | if [ "<${input4dataOff}>" != "<>" -a "<${input4dataOn}>" != "<>" ]; then
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| 182 | #look at the content of the datacycle directory as may be the previous batch job has crashed
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| 183 | tableauOff=( `$ECHO ${input4dataOff}` )
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| 184 | IFS='
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| 185 | '
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| 186 | tableauOff=( $( $PRINTF "%s\n" "${tableauOff[@]}" | $AWK 'x[$0]++ == 0' ) )
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| 187 | IFS=$DefaultIFS
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| 188 | #
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| 189 | nTotFilesOff=0
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| 190 | for j in ${tableauOff[@]}
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| 191 | do
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| 192 | nFiles=`ils ${i}/Off/${j} | $GREP -i "medfiltmtx" | $WC -l`
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| 193 | nTotFilesOff=`expr ${nTotFilesOff} + ${nFiles}`
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| 194 | done
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| 195 | #
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| 196 | tableauOn=( `$ECHO ${input4dataOn}` )
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| 197 | IFS='
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| 198 | '
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| 199 | tableauOn=( $( $PRINTF "%s\n" "${tableauOn[@]}" | $AWK 'x[$0]++ == 0' ) )
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| 200 | IFS=$DefaultIFS
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| 201 | #
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| 202 | nTotFilesOn=0
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| 203 | for j in ${tableauOn[@]}
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| 204 | do
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| 205 | nFiles=`ils ${i}/On/${j} | $GREP -i "medfiltmtx" | $WC -l`
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| 206 | nTotFilesOn=`expr ${nTotFilesOn} + ${nFiles}`
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| 207 | done
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| 208 | diffOnOff=`expr ${nTotFilesOff} - ${nTotFilesOn}`
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| 209 | if [ ${diffOnOff} -lt 0 ]; then
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| 210 | zero=0
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| 211 | diffOnOff=`expr ${zero} - ${diffOnOff}`
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| 212 | fi
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| 213 | #allow files differences but non zero
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| 214 | if [ ${nTotFilesOff} -gt 0 -a ${nTotFilesOn} -gt 0 ]; then
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| 215 | somethingTodo=0
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| 216 | $ECHO "DEBUG (${scriptName}): $sourceRadio $dateDAQ has <${nTotFilesOff}> Off-files and <${nTotFilesOn}> On-files but OK"
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| 217 | else
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| 218 | $ECHO "INFO (${scriptName}): $sourceRadio $dateDAQ has <${nTotFilesOff}> Off-files and <${nTotFilesOn}> On-files => one should rebuild has something is wrong"
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| 219 | fi
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| 220 | #
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| 221 | #look at consecutive cycles
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| 222 |
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| 223 | rmDirectory=0
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| 224 |
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| 225 | cycleIdOff=`$ECHO $input4dataOff | sed 's/datacycle//g'`
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| 226 | tableauOff=( `$ECHO ${cycleIdOff}` )
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| 227 | IFS='
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| 228 | '
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| 229 | tableauOff=( $( $PRINTF "%s\n" "${tableauOff[@]}" | $AWK 'x[$0]++ == 0' ) )
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| 230 | IFS=$DefaultIFS
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| 231 |
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| 232 | lastIdOff=`expr ${#tableauOff[*]} - 1`
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| 233 | ncycleOff=`expr ${tableauOff[${lastIdOff}]} - ${tableauOff[0]} + 1`
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| 234 | ncycleOffVerif=${#tableauOff[*]}
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| 235 | if [ "<${ncycleOff}>" != "<${ncycleOffVerif}>" ]; then
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| 236 | $ECHO "$sourceRadio $dateDAQ: There is a lack of OFF cycles in the sequence: ${tableauOff[@]}"
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| 237 | rmDirectory=1
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| 238 | somethingTodo=1
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| 239 | else
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| 240 | $ECHO "$sourceRadio $dateDAQ: Ok at least consecutive OFF cycles: ${tableauOff[@]}"
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| 241 | fi
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| 242 |
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| 243 | cycleIdOn=`$ECHO $input4dataOn | sed 's/datacycle//g'`
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| 244 | tableauOn=( `$ECHO ${cycleIdOn}` )
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| 245 | IFS='
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| 246 | '
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| 247 | tableauOn=( $( $PRINTF "%s\n" "${tableauOn[@]}" | $AWK 'x[$0]++ == 0' ) )
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| 248 | IFS=$DefaultIFS
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| 249 |
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| 250 | lastIdOn=`expr ${#tableauOn[*]} - 1`
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| 251 | ncycleOn=`expr ${tableauOn[${lastIdOn}]} - ${tableauOn[0]} + 1`
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| 252 | ncycleOnVerif=${#tableauOn[*]}
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| 253 | if [ "<${ncycleOn}>" != "<${ncycleOnVerif}>" ]; then
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| 254 | $ECHO "$sourceRadio $dateDAQ: There is a lack of ON cycles in the sequence: ${tableauOn[@]}"
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| 255 | rmDirectory=1
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| 256 | somethingTodo=1
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| 257 | else
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| 258 | $ECHO "$sourceRadio $dateDAQ: Ok at least consecutive ON cycles: ${tableauOn[@]}"
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| 259 | fi
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| 260 |
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| 261 | if [ "<${cycleIdOff}>" != "<${cycleIdOn}>" ]; then
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| 262 | $ECHO "$sourceRadio $dateDAQ: cycles seq. missmatch ON and OFF"
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| 263 | rmDirectory=1
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| 264 | somethingTodo=1
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| 265 | fi
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| 266 | #
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| 267 | fi
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| 268 | ########
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| 269 | if [ ${somethingTodo} -eq 1 ]; then
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| 270 | #
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| 271 | $ECHO ">>>>>>>>>>>>>>>> Do $sourceRadio $dateDAQ ANALOFF"
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| 272 |
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| 273 | if [ ${rmDirectory} -eq 1 ]; then
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| 274 | #delete datacycle Off
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| 275 | dirToRmOff=`ils ${i}/Off 2>&1 | $GREP -i "datacycle" | $AWK 'BEGIN{FS="C- "}{print $2}'`
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| 276 | tableauOff=( `$ECHO ${dirToRmOff}` )
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| 277 | IFS='
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| 278 | '
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| 279 | tableauOff=( $( $PRINTF "%s\n" "${tableauOff[@]}" | $AWK 'x[$0]++ == 0' ) )
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| 280 | IFS=$DefaultIFS
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| 281 | for j in ${tableauOff[@]}
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| 282 | do
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| 283 | irm -f -r -v ${j}
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| 284 | done
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| 285 | #delete datacycle On
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| 286 | dirToRmOn=`ils ${i}/On 2>&1 | $GREP -i "datacycle" | $AWK 'BEGIN{FS="C- "}{print $2}'`
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| 287 | tableauOn=( `$ECHO ${dirToRmOn}` )
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| 288 | IFS='
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| 289 | '
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| 290 | tableauOn=( $( $PRINTF "%s\n" "${tableauOn[@]}" | $AWK 'x[$0]++ == 0' ) )
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| 291 | IFS=$DefaultIFS
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| 292 | for j in ${tableauOn[@]}
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| 293 | do
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| 294 | irm -f -r -v ${j}
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| 295 | done
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| 296 | fi
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| 297 |
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| 298 | $RM -f ${tmppublicpath}/proc_script.finished
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| 299 | if [ ${simulationMode} = "On" ]; then
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| 300 | $ECHO "SIMUL: ${scriptpath}/proc_script.sh $sourceRadio $dateDAQ OFF"
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| 301 | else
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| 302 | ${scriptpath}/proc_script.sh $sourceRadio $dateDAQ OFF
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| 303 | while [ ! -e "${tmppublicpath}/proc_script.finished" ]; do
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| 304 | $ECHO "INFO (${scriptName}): waiting for ${tmppublicpath}/proc_script.finished"
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| 305 | date +%T
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| 306 | sleep 60
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| 307 | done
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| 308 | fi
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| 309 | $ECHO "INFO (${scriptName}): proc_script has finished"
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| 310 | $ECHO ">>>>>>>>>>>> Done $sourceRadio $dateDAQ OFF"
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| 311 | $ECHO ">>>>>>>>>>>>>>>> Do $sourceRadio $dateDAQ ON"
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| 312 | $RM ${tmppublicpath}/proc_script.finished
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| 313 |
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| 314 | if [ ${simulationMode} = "On" ]; then
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| 315 | $ECHO "SIMUL: ${scriptpath}/proc_script.sh $sourceRadio $dateDAQ ON"
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| 316 | else
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| 317 | ${scriptpath}/proc_script.sh $sourceRadio $dateDAQ ON
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| 318 | while [ ! -e "${tmppublicpath}/proc_script.finished" ]; do
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| 319 | $ECHO "INFO (${scriptName}): waiting for ${tmppublicpath}/proc_script.finished"
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| 320 | date +%T
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| 321 | sleep 60
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| 322 | done
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| 323 | fi
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| 324 | $ECHO "INFO (${scriptName}): proc_script has finished"
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| 325 | $RM ${tmppublicpath}/proc_script.finished
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| 326 | #Todo see if there is errors in the log file before copy
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| 327 | $ECHO ">>>>>>>>>>>> Done $sourceRadio $dateDAQ ON"
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| 328 | fi
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| 329 | done
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| 330 |
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| 331 | exit 0
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