[1506] | 1 | /* Interface Fits BINARY/ASCII Table cmv 21/05/2001 */
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[2902] | 2 | /* Ajout commandes generique lecture/ecriture FITS */
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| 3 | /* Reza , Jan 2006 */
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| 4 |
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| 5 |
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[2615] | 6 | #include "sopnamsp.h"
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[1506] | 7 | #include "machdefs.h"
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| 8 | #include <stdlib.h>
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| 9 | #include <stdio.h>
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| 10 | #include <typeinfo>
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[2322] | 11 | #include <iostream>
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[1506] | 12 | #include <string.h>
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| 13 | #include <string>
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| 14 |
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| 15 | #include "nobjmgr.h"
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| 16 | #include "servnobjm.h"
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| 17 | #include "nomgadapter.h"
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| 18 | #include "pistdimgapp.h"
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| 19 | #include "fbtntintf.h"
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| 20 |
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[3068] | 21 | #include "nomhistadapter.h"
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| 22 | #include "swfitsdtable.h"
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| 23 |
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[2902] | 24 | #include "fitsmanager.h"
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| 25 | #include "fitshandler.h"
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| 26 | #include "fiosinit.h"
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| 27 |
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[1506] | 28 | ////////////////////////////////////////////////////////////
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| 29 | class NOMAdapter_FitsBT : public NObjMgrAdapter {
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| 30 | public:
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| 31 | NOMAdapter_FitsBT(FitsBTNtuIntf* o = NULL);
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| 32 | virtual ~NOMAdapter_FitsBT();
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| 33 |
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| 34 | virtual NObjMgrAdapter* Clone(AnyDataObj* o);
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| 35 | virtual string GetDataObjType();
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| 36 | virtual AnyDataObj* CloneDataObj(bool share=false);
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| 37 | virtual void SavePPF(POutPersist& s, string const & nom);
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[2977] | 38 | virtual void Print(ostream& os, int lev=0);
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[1506] | 39 | virtual NTupleInterface* GetNTupleInterface(bool& adel);
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| 40 |
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| 41 | protected:
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| 42 | FitsBTNtuIntf* mFBT;
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| 43 | };
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| 44 |
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| 45 | ////////////////////////////////////////////////////////////
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| 46 | NOMAdapter_FitsBT::NOMAdapter_FitsBT(FitsBTNtuIntf* o)
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| 47 | : NObjMgrAdapter(o)
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| 48 | {
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| 49 | mFBT = o;
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| 50 | }
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| 51 |
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| 52 | NOMAdapter_FitsBT::~NOMAdapter_FitsBT()
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| 53 | {
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| 54 | }
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| 55 |
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| 56 | NObjMgrAdapter* NOMAdapter_FitsBT::Clone(AnyDataObj* o)
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| 57 | {
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| 58 | FitsBTNtuIntf* g = dynamic_cast<FitsBTNtuIntf *>(o);
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| 59 | if(g) return ( new NOMAdapter_FitsBT(g) );
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| 60 | return ( new NObjMgrAdapter(o) );
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| 61 | }
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| 62 |
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| 63 | string NOMAdapter_FitsBT::GetDataObjType()
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| 64 | {
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| 65 | return( "FitsBTNtuIntf " );
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| 66 | }
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| 67 |
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| 68 | AnyDataObj* NOMAdapter_FitsBT::CloneDataObj(bool /*share*/)
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| 69 | {
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| 70 | return( new FitsBTNtuIntf(*mFBT) );
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| 71 | }
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| 72 |
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| 73 | void NOMAdapter_FitsBT::SavePPF(POutPersist& pos, string const & nom)
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| 74 | {
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| 75 | cout<<"NOMAdapter_FitsBT::SavePPF: not implemented"<<endl;
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| 76 | }
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| 77 |
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[2977] | 78 | void NOMAdapter_FitsBT::Print(ostream& os, int lev)
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[1506] | 79 | {
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[2977] | 80 | mFBT->Print(os, lev);
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[1506] | 81 | }
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| 82 |
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| 83 | NTupleInterface* NOMAdapter_FitsBT::GetNTupleInterface(bool& adel)
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| 84 | {
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| 85 | adel = false;
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| 86 | return(mFBT);
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| 87 | }
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| 88 |
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| 89 | ////////////////////////////////////////////////////////////
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| 90 | ////////////////////////////////////////////////////////////
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| 91 | /////////////////////////////////////////////////////////////
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| 92 | ///////////////////////////////////////////////////////////
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| 93 | extern "C" {
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| 94 | void fitsbtadapter_init();
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| 95 | void fitsbtadapter_end();
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| 96 | }
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| 97 |
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| 98 | class fitsbtadapterExecutor : public CmdExecutor {
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| 99 | public:
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| 100 | fitsbtadapterExecutor();
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| 101 | virtual ~fitsbtadapterExecutor();
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| 102 | virtual int Execute(string& keyw, vector<string>& args, string& toks);
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| 103 | };
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| 104 |
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| 105 | ///////////////////////////////////////////////////////////
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| 106 | fitsbtadapterExecutor::fitsbtadapterExecutor()
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| 107 | {
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[2902] | 108 | FitsIOServerInit(); // On s'assure de l'initialisation du module FitsIOServer
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| 109 |
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[1506] | 110 | NamedObjMgr omg;
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| 111 | PIACmd * mpiac = omg.GetImgApp()->CmdInterpreter();
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| 112 |
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| 113 | // On enregistre l'adaptateur
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| 114 | Services2NObjMgr* serv = omg.GetServiceObj();
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| 115 | serv->RegisterClass(new FitsBTNtuIntf, new NOMAdapter_FitsBT);
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[3068] | 116 | // ainsi que pour l'adaptateur de SwFitsDataTable
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| 117 | serv->RegisterClass(new SwFitsDataTable, new NOMAdapter_DataTable );
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[1506] | 118 |
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| 119 | // On enregistre la commande
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| 120 | string hgrp = "FileIO";
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| 121 | string kw = "fitsadapt";
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| 122 | string usage = "fitsadapt: NTuple adaptor for Binary and ASCII Fits table\n" ;
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[2252] | 123 | usage += "Usage: fitsadapt fitsfile [nomobj hdu buflen[,bufsens,lp]]";
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[1506] | 124 | usage += "\n fitsfile : Fits file name";
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[2252] | 125 | usage += "\n nomobj : Object name (needed if file name misleading as C++ variable)";
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[1506] | 126 | usage += "\n hdu : Fits HDU (if <=0 take first binary/ascii table)";
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| 127 | usage += "\n buflen[,bufsens,lp] : buffer length (sens) for fits reading (default is 100,1,0)";
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[2902] | 128 | usage += "\n See also scanfits writefits readfits ";
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[1506] | 129 | mpiac->RegisterCommand(kw, usage, this, hgrp);
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[2902] | 130 |
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| 131 | kw = "scanfits";
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| 132 | usage = "scanfits: scan fits files and print information on each HDU\n" ;
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[3042] | 133 | usage += "Usage: scanfits FileName [slev=0...3]\n";
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| 134 | usage += "slev=1,3: header keywords , slev=2,3: try to read each HDU\n";
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| 135 | usage += "See also: readfits writefits fitsadapt ";
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[2902] | 136 | mpiac->RegisterCommand(kw, usage, this, hgrp);
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| 137 |
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| 138 | kw = "writefits";
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| 139 | usage = "writefits: Write objects to a fits file \n" ;
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| 140 | usage += "Usage: writefits nameobj/pattern FileName \n";
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[3042] | 141 | usage += "See also: scanfits readfits fitsadapt ";
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[2902] | 142 | mpiac->RegisterCommand(kw, usage, this, hgrp);
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| 143 |
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| 144 | kw = "readfits";
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[3042] | 145 | usage = "readfits: Read one or all HDU's of a fits file \n" ;
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| 146 | usage += "Usage: readfits FileName [num_hdu] \n";
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| 147 | usage += " num_hdu=1,..,NbHDU (uses FitsManager) \n";
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[3068] | 148 | usage += "See also scanfits writefits fitsadapt swfitstable ";
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[2902] | 149 | mpiac->RegisterCommand(kw, usage, this, hgrp);
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[3068] | 150 |
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| 151 | kw = "swfitstable";
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| 152 | usage = "swfitstable: Creates/read an SwFitsDataTable from a fits file\n" ;
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| 153 | usage += " SwFitsDataTable is a table which uses the BINARY-TBL\n";
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| 154 | usage += " of the fits file as swap space - useful for large tables\n";
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| 155 | usage += "Usage: swfitstable FileName [num_hdu=2] [segsize=512]\n";
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| 156 | usage += "See also: readfits scanfits";
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| 157 | mpiac->RegisterCommand(kw, usage, this, hgrp);
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[1506] | 158 | }
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| 159 |
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| 160 | fitsbtadapterExecutor::~fitsbtadapterExecutor()
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| 161 | {
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| 162 | }
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| 163 |
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| 164 | int fitsbtadapterExecutor::Execute(string& kw, vector<string>& tokens, string&)
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| 165 | {
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| 166 | NamedObjMgr omg;
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| 167 | if(kw == "fitsadapt") {
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| 168 | if(tokens.size()<1)
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[2252] | 169 | {cout<<"Usage: fitsadapt fitsfile [nomobj hdu buflen[,bufsens]]"<<endl;
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[1506] | 170 | return(0);}
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| 171 | int ihdu=0;
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| 172 | int_4 buflen=100, bufsens=1, lp=0;
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| 173 | string fname = tokens[0];
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[2252] | 174 | string nom_obj ="";
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| 175 | if(tokens.size()>1) nom_obj = tokens[1];
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| 176 | if(tokens.size()>2) sscanf(tokens[2].c_str(),"%d",&ihdu);
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| 177 | if(tokens.size()>3) sscanf(tokens[3].c_str(),"%d,%d,%d",&buflen,&bufsens,&lp);
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[1506] | 178 | FitsBTNtuIntf* fbt = new FitsBTNtuIntf(fname,ihdu,buflen,bufsens,lp);
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[2252] | 179 |
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| 180 | if(nom_obj=="" || nom_obj=="!") nom_obj = omg.GetServiceObj()->FileName2Name(fname);
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| 181 | omg.AddObj(fbt,nom_obj);
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[1506] | 182 | }
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[2902] | 183 | else if (kw == "scanfits") {
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| 184 | if(tokens.size() < 1) {
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| 185 | cout<<"Usage: scanfits FileName [slev] "<<endl;
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| 186 | return 1;
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| 187 | }
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| 188 | int slev = 0;
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| 189 | if(tokens.size() > 1) slev = atoi(tokens[1].c_str());
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| 190 | FitsManager::ScanFile(tokens[0], slev);
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| 191 | return 0;
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| 192 | }
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[3068] | 193 | else if (kw == "swfitstable") {
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| 194 | if(tokens.size() < 1) {
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| 195 | cout<<"Usage: swfitstable FileName [num_hdu=2] [segsize=512]"<<endl;
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| 196 | return 1;
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| 197 | }
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| 198 | int numhdu = 2;
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| 199 | if(tokens.size() > 1) numhdu = atoi(tokens[1].c_str());
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| 200 | int segsize = 512;
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| 201 | if(tokens.size() > 2) segsize = atoi(tokens[2].c_str());
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| 202 | SwFitsDataTable* swfd = new SwFitsDataTable(tokens[0], numhdu, segsize);
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| 203 | if (swfd != NULL) {
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| 204 | string nom = omg.GetServiceObj()->FileName2Name(tokens[0]);
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| 205 | omg.AddObj(swfd, nom, false);
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| 206 | cout << "swfitstable: SwFitsDataTable object" << nom << " from"
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| 207 | << tokens[0] << " HDU=" << numhdu << endl;
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| 208 | }
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| 209 | return 0;
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| 210 | }
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[2902] | 211 | else if (kw == "writefits") {
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| 212 | if(tokens.size() < 2) {
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| 213 | cout<<"Usage: writefits nameobj/pattern FileName "<<endl;
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| 214 | return 1;
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| 215 | }
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| 216 | vector<string> noms;
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| 217 | omg.GetObjList(tokens[0], noms);
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| 218 | if (noms.size() < 1) {
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| 219 | cout<<"writefits/Error: no object with this name "<<endl;
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| 220 | return 2;
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| 221 | }
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| 222 | cout << "writefits: Opening/Creating fits file " << tokens[1] << endl;
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| 223 | FitsInOutFile fos(tokens[1], FitsInOutFile::Fits_Create);
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| 224 | for(int kk=0; kk<noms.size(); kk++) {
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| 225 | AnyDataObj* co = omg.GetObj(noms[kk]);
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| 226 | if (co == NULL) continue;
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| 227 | fos.SetNextExtensionName(noms[kk]);
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| 228 | try {
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| 229 | FitsManager::Write(fos, *co);
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| 230 | cout << "writefits: Object " << noms[kk] << " written to HDU No " << fos.CurrentHDU() << endl;
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| 231 | }
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| 232 | catch (NotFoundExc & exc) {
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| 233 | cout << "writefits/Error writing object " << noms[kk] << " -> " << exc.Msg() << endl;
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| 234 | }
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| 235 | }
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| 236 | return 0;
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| 237 | }
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| 238 | else if (kw == "readfits") {
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| 239 | if(tokens.size() < 1) {
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[3042] | 240 | cout<<"Usage: readfits FileName [num_hdu]"<<endl;
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[2902] | 241 | return 1;
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| 242 | }
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[3042] | 243 | cout << "readfits: Opening fits file " << tokens[0];
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[2902] | 244 | FitsInOutFile fis(tokens[0], FitsInOutFile::Fits_RO);
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[3042] | 245 | int k1 = 1;
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| 246 | int k2 = fis.NbHDUs();
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| 247 | if (fis.CurrentHDU() > 1) k1 = k2 = fis.CurrentHDU();
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| 248 | bool fgshdu = false;
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| 249 | if (tokens.size() > 1) { // Numero de HDU specifie
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| 250 | k2 = k1 = atoi(tokens[1].c_str());
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| 251 | fgshdu = true;
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| 252 | cout << " - HDU Num " << k1 << endl;
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| 253 | }
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| 254 | else cout << " - HDU's " << k1 << "-" << k2 << endl;
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| 255 |
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[2902] | 256 | string bnom = omg.GetServiceObj()->FileName2Name(tokens[0]);
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| 257 | string nom = bnom;
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| 258 | char bun[16];
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| 259 | int kon = 0;
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[3042] | 260 | for(int k=k1; k<=k2; k++) {
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[2902] | 261 | try {
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[3042] | 262 | if (fgshdu) fis.MoveAbsToHDU(k);
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[2902] | 263 | FitsHandlerInterface* fhi = FitsManager::Read(fis);
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| 264 | AnyDataObj* obj = fhi->DataObj();
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| 265 | if (obj) {
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| 266 | kon++;
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| 267 | if (kon > 1) {
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| 268 | sprintf(bun, "%d", kon);
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| 269 | nom = bnom + bun;
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| 270 | }
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| 271 | omg.AddObj(obj, nom, false);
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| 272 | cout << "readfits: " << (string)typeid(*obj).name()
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[3042] | 273 | << " read From HDU " << k << " ->" << nom << endl;
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[2902] | 274 | }
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| 275 | else delete fhi;
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| 276 | //Reza, Jan 2006: Sinon, le fhi ne sera jamais supprime, tant pis
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| 277 | // Il ne prend pas beaucoup de place, une fois que son objet est delete
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| 278 | }
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| 279 | catch (NotFoundExc & exc) {
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| 280 | cout << "readfits/Error - HDU=" << k+1 << " : " << exc.Msg() << endl;
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| 281 | }
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[3042] | 282 | if (k<k2) fis.MoveToNextHDU();
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[2902] | 283 | }
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| 284 | return 0;
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| 285 | }
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[1506] | 286 | return(0);
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| 287 | }
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| 288 |
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| 289 | ///////////////////////////////////////////////////////////
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| 290 | static fitsbtadapterExecutor * piafbtex = NULL;
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| 291 |
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| 292 | void fitsbtadapter_init()
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| 293 | {
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| 294 | if(piafbtex) delete piafbtex;
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| 295 | piafbtex = new fitsbtadapterExecutor;
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| 296 | }
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| 297 |
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| 298 | void fitsbtadapter_end()
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| 299 | {
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| 300 | if(piafbtex) delete piafbtex;
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| 301 | piafbtex = NULL;
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| 302 | }
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